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74
content/posts/2021-10.md
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@ -531,78 +531,4 @@ $ wc -l /tmp/ips-to-purge.txt
- Help ICARDA colleagues with GLDC reports on AReS
- There was an issue due to differences in CRP metadata between repositories
## 2021-10-28
- Meeting with Medha and a bunch of others about the FAIRscribe tool they have been developing
- Seems it is a submission tool like MEL
## 2021-10-29
- Linode alerted me that CGSpace (linode18) has high outbound traffic for the last two hours
- This has happened a few other times this week so I decided to go look at the Solr stats for today
- I see 93.158.91.62 is making thousands of requests to Discover with a normal user agent:
```
Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/94.0.4606.81 Safari/537.36
```
- Even more annoying, they are not re-using their session ID:
```console
$ grep 93.158.91.62 log/dspace.log.2021-10-29 | grep -oE 'session_id=[A-Z0-9]{32}:ip_addr=' | sort | uniq | wc -l
4888
```
- This IP has made 36,000 requests to CGSpace...
- The IP is owned by [Internet Vikings](internetvikings.com) in Sweden
- I purged their statistics and set up a temporary HTTP 403 telling them to use a real user agent
- I see another one in Sweden a few days ago (192.36.109.131), also using the same exact user agent as above, but belonging to [Resilans AB](http://webb.resilans.se/)
- I purged another 74,619 hits from this bot
- I added these two IPs to the nginx IP bot identifier
- Jesus I found a few Russian IPs attempting SQL injection and path traversal, ie:
```
45.9.20.71 - - [20/Oct/2021:02:31:15 +0200] "GET /bitstream/handle/10568/1820/Rhodesgrass.pdf?sequence=4&OoxD=6591%20AND%201%3D1%20UNION%20ALL%20SELECT%201%2CNULL%2C%27%3Cscript%3Ealert%28%22XSS%22%29%3C%2Fscript%3E%27%2Ctable_name%20FROM%20information_schema.tables%20WHERE%202%3E1--%2F%2A%2A%2F%3B%20EXEC%20xp_cmdshell%28%27cat%20..%2F..%2F..%2Fetc%2Fpasswd%27%29%23 HTTP/1.1" 200 143070 "https://cgspace.cgiar.org:443/bitstream/handle/10568/1820/Rhodesgrass.pdf" "Mozilla/5.0 (X11; U; Linux i686; es-AR; rv:1.8.1.11) Gecko/20071204 Ubuntu/7.10 (gutsy) Firefox/2.0.0.11"
```
- I reported them to AbuseIPDB.com and purged their hits:
```console
$ ./ilri/check-spider-ip-hits.sh -f /tmp/ip.txt -p
Purging 6364 hits from 45.9.20.71 in statistics
Purging 8039 hits from 45.146.166.157 in statistics
Purging 3383 hits from 45.155.204.82 in statistics
Total number of bot hits purged: 17786
```
## 2021-10-31
- Update Docker containers for AReS on linode20 and run a fresh harvest
- Found some strange IP (94.71.3.44) making 51,000 requests today with the user agent "Microsoft Internet Explorer"
- It is in Greece, and it seems to be requesting each item's XMLUI full metadata view, so I suspect it's Gardian actually
- I found it making another 25,000 requests yesterday...
- I purged them from Solr
- Found 20,000 hits from Qualys (according to AbuseIPDB.com) using normal user agents... ugh, must be some ILRI ICT scan
- Found more request from a Swedish IP (93.158.90.34) using that weird Firefox user agent that I noticed a few weeks ago:
```
Mozilla/5.0 (Macintosh; Intel Mac OS X 11.1; rv:84.0) Gecko/20100101 Firefox/84.0
```
- That's from ASN 12552 (IPO-EU, SE), which is operated by Internet Vikings, though AbuseIPDB.com says it's [Availo Networks AB](availo.se)
- There's another IP (3.225.28.105) that made a few thousand requests to the REST API from Amazon, though it's using a normal user agent
```console
# zgrep 3.225.28.105 /var/log/nginx/rest.log.* | wc -l
3991
~# zgrep 3.225.28.105 /var/log/nginx/rest.log.* | grep -oE 'GET /rest/(collections|handle|items)' | sort | uniq -c
3154 GET /rest/collections
427 GET /rest/handle
410 GET /rest/items
```
- It requested the [CIAT Story Maps](https://cgspace.cgiar.org/handle/10568/75560) collection over 3,000 times last month...
- I will purge those hits
<!-- vim: set sw=2 ts=2: -->

12
content/posts/2021-11.md
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@ -1,12 +0,0 @@
---
title: "November, 2021"
date: 2021-11-01T11:14:07+03:00
author: "Alan Orth"
categories: ["Notes"]
---
## 2021-11-01
<!--more-->
<!-- vim: set sw=2 ts=2: -->

4
docs/2015-11/index.html
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@ -242,8 +242,6 @@ db.statementpool = true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -252,6 +250,8 @@ db.statementpool = true
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2015-12/index.html
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@ -264,8 +264,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -274,6 +272,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-01/index.html
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@ -200,8 +200,6 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -210,6 +208,8 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-02/index.html
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@ -378,8 +378,6 @@ Bitstream: tést señora alimentación.pdf
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -388,6 +386,8 @@ Bitstream: tést señora alimentación.pdf
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-03/index.html
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@ -316,8 +316,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -326,6 +324,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-04/index.html
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@ -495,8 +495,6 @@ dspace.log.2016-04-27:7271
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -505,6 +503,8 @@ dspace.log.2016-04-27:7271
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-05/index.html
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@ -371,8 +371,6 @@ sys 0m20.540s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -381,6 +379,8 @@ sys 0m20.540s
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-06/index.html
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@ -409,8 +409,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -419,6 +417,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-07/index.html
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@ -325,8 +325,6 @@ discovery.index.authority.ignore-variants=true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -335,6 +333,8 @@ discovery.index.authority.ignore-variants=true
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-08/index.html
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@ -389,8 +389,6 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -399,6 +397,8 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-09/index.html
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@ -606,8 +606,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -616,6 +614,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-10/index.html
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@ -372,8 +372,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -382,6 +380,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-11/index.html
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@ -548,8 +548,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -558,6 +556,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2016-12/index.html
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@ -784,8 +784,6 @@ $ exit
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -794,6 +792,8 @@ $ exit
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-01/index.html
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@ -369,8 +369,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -379,6 +377,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-02/index.html
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@ -424,8 +424,6 @@ COPY 1968
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -434,6 +432,8 @@ COPY 1968
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-03/index.html
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@ -355,8 +355,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -365,6 +363,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-04/index.html
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@ -585,8 +585,6 @@ $ gem install compass -v 1.0.3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -595,6 +593,8 @@ $ gem install compass -v 1.0.3
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-05/index.html
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@ -391,8 +391,6 @@ UPDATE 187
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -401,6 +399,8 @@ UPDATE 187
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-06/index.html
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@ -270,8 +270,6 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -280,6 +278,8 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-07/index.html
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@ -275,8 +275,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -285,6 +283,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-08/index.html
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@ -517,8 +517,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -527,6 +525,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-09/index.html
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@ -659,8 +659,6 @@ Cert Status: good
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -669,6 +667,8 @@ Cert Status: good
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-10/index.html
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@ -443,8 +443,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -453,6 +451,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-11/index.html
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@ -944,8 +944,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -954,6 +952,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2017-12/index.html
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@ -783,8 +783,6 @@ DELETE 20
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -793,6 +791,8 @@ DELETE 20
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-01/index.html
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@ -1452,8 +1452,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -1462,6 +1460,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-02/index.html
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@ -1039,8 +1039,6 @@ UPDATE 3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -1049,6 +1047,8 @@ UPDATE 3
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-03/index.html
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@ -585,8 +585,6 @@ Fixed 5 occurences of: GENEBANKS
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -595,6 +593,8 @@ Fixed 5 occurences of: GENEBANKS
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-04/index.html
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@ -594,8 +594,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -604,6 +602,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-05/index.html
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@ -523,8 +523,6 @@ $ psql -h localhost -U postgres dspacetest
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -533,6 +531,8 @@ $ psql -h localhost -U postgres dspacetest
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-06/index.html
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@ -517,8 +517,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -527,6 +525,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-07/index.html
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@ -569,8 +569,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -579,6 +577,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-08/index.html
View File

@ -442,8 +442,6 @@ $ dspace database migrate ignored
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -452,6 +450,8 @@ $ dspace database migrate ignored
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-09/index.html
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@ -748,8 +748,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -758,6 +756,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-10/index.html
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@ -656,8 +656,6 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -666,6 +664,8 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-11/index.html
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@ -553,8 +553,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -563,6 +561,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2018-12/index.html
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@ -594,8 +594,6 @@ UPDATE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -604,6 +602,8 @@ UPDATE 1
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-01/index.html
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@ -1264,8 +1264,6 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -1274,6 +1272,8 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-02/index.html
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@ -1344,8 +1344,6 @@ Please see the DSpace documentation for assistance.
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -1354,6 +1352,8 @@ Please see the DSpace documentation for assistance.
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-03/index.html
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@ -1208,8 +1208,6 @@ sys 0m2.551s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -1218,6 +1216,8 @@ sys 0m2.551s
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-04/index.html
View File

@ -1299,8 +1299,6 @@ UPDATE 14
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -1309,6 +1307,8 @@ UPDATE 14
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-05/index.html
View File

@ -631,8 +631,6 @@ COPY 64871
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -641,6 +639,8 @@ COPY 64871
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-06/index.html
View File

@ -317,8 +317,6 @@ UPDATE 2
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -327,6 +325,8 @@ UPDATE 2
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-07/index.html
View File

@ -554,8 +554,6 @@ issn.validate('1020-3362')
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -564,6 +562,8 @@ issn.validate('1020-3362')
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-08/index.html
View File

@ -573,8 +573,6 @@ sys 2m27.496s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -583,6 +581,8 @@ sys 2m27.496s
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-09/index.html
View File

@ -581,8 +581,6 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -591,6 +589,8 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-10/index.html
View File

@ -385,8 +385,6 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -395,6 +393,8 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-11/index.html
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@ -692,8 +692,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -702,6 +700,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2019-12/index.html
View File

@ -404,8 +404,6 @@ UPDATE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -414,6 +412,8 @@ UPDATE 1
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-01/index.html
View File

@ -604,8 +604,6 @@ COPY 2900
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -614,6 +612,8 @@ COPY 2900
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-02/index.html
View File

@ -1275,8 +1275,6 @@ Moving: 21993 into core statistics-2019
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -1285,6 +1283,8 @@ Moving: 21993 into core statistics-2019
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-03/index.html
View File

@ -484,8 +484,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -494,6 +492,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-04/index.html
View File

@ -658,8 +658,6 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -668,6 +666,8 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-05/index.html
View File

@ -477,8 +477,6 @@ Caused by: java.lang.NullPointerException
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -487,6 +485,8 @@ Caused by: java.lang.NullPointerException
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-06/index.html
View File

@ -811,8 +811,6 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -821,6 +819,8 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-07/index.html
View File

@ -1142,8 +1142,6 @@ Fixed 4 occurences of: Muloi, D.M.
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -1152,6 +1150,8 @@ Fixed 4 occurences of: Muloi, D.M.
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-08/index.html
View File

@ -798,8 +798,6 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -808,6 +806,8 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-09/index.html
View File

@ -717,8 +717,6 @@ solr_query_params = {
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -727,6 +725,8 @@ solr_query_params = {
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-10/index.html
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@ -1241,8 +1241,6 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -1251,6 +1249,8 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-11/index.html
View File

@ -731,8 +731,6 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -741,6 +739,8 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2020-12/index.html
View File

@ -869,8 +869,6 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-2020-12-29?pretty'
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -879,6 +877,8 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-2020-12-29?pretty'
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2021-01/index.html
View File

@ -688,8 +688,6 @@ java.lang.IllegalArgumentException: Invalid character found in the request targe
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -698,6 +696,8 @@ java.lang.IllegalArgumentException: Invalid character found in the request targe
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2021-02/index.html
View File

@ -898,8 +898,6 @@ dspace.log.2021-02-28:0
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -908,6 +906,8 @@ dspace.log.2021-02-28:0
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2021-03/index.html
View File

@ -875,8 +875,6 @@ COPY 3081
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -885,6 +883,8 @@ COPY 3081
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2021-04/index.html
View File

@ -1042,8 +1042,6 @@ $ ./ilri/doi-to-handle.py -i /tmp/dois.txt -o /tmp/handles.csv -db dspace63 -u d
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -1052,6 +1050,8 @@ $ ./ilri/doi-to-handle.py -i /tmp/dois.txt -o /tmp/handles.csv -db dspace63 -u d
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2021-05/index.html
View File

@ -685,8 +685,6 @@ Please see the DSpace documentation for assistance.
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -695,6 +693,8 @@ Please see the DSpace documentation for assistance.
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2021-06/index.html
View File

@ -693,8 +693,6 @@ COPY 1710
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -703,6 +701,8 @@ COPY 1710
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2021-07/index.html
View File

@ -715,8 +715,6 @@ $ cat AS* /tmp/ddos-networks-to-block.txt | sed -e '/^$/d' -e '/^#/d' -e '/^{/d'
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -725,6 +723,8 @@ $ cat AS* /tmp/ddos-networks-to-block.txt | sed -e '/^$/d' -e '/^#/d' -e '/^{/d'
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2021-08/index.html
View File

@ -606,8 +606,6 @@ $ ./ilri/add-orcid-identifiers-csv.py -i 2021-08-25-add-orcids.csv -db dspace -u
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -616,6 +614,8 @@ $ ./ilri/add-orcid-identifiers-csv.py -i 2021-08-25-add-orcids.csv -db dspace -u
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/2021-09/index.html
View File

@ -588,8 +588,6 @@ $ csvcut -c subject,'match type' /tmp/2021-09-29-ilri-subjects.csv | sed -e 's/m
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -598,6 +596,8 @@ $ csvcut -c subject,'match type' /tmp/2021-09-29-ilri-subjects.csv | sed -e 's/m
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

86
docs/2021-10/index.html
View File

@ -25,7 +25,7 @@ So we have 1879/7100 (26.46%) matching already
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-10/" />
<meta property="article:published_time" content="2021-10-01T11:14:07+03:00" />
<meta property="article:modified_time" content="2021-11-01T10:48:13+02:00" />
<meta property="article:modified_time" content="2021-10-24T21:21:01+03:00" />
@ -56,9 +56,9 @@ So we have 1879/7100 (26.46%) matching already
"@type": "BlogPosting",
"headline": "October, 2021",
"url": "https://alanorth.github.io/cgspace-notes/2021-10/",
"wordCount": "4224",
"wordCount": "3747",
"datePublished": "2021-10-01T11:14:07+03:00",
"dateModified": "2021-11-01T10:48:13+02:00",
"dateModified": "2021-10-24T21:21:01+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -694,82 +694,6 @@ $ wc -l /tmp/ips-to-purge.txt
</ul>
</li>
</ul>
<h2 id="2021-10-28">2021-10-28</h2>
<ul>
<li>Meeting with Medha and a bunch of others about the FAIRscribe tool they have been developing
<ul>
<li>Seems it is a submission tool like MEL</li>
</ul>
</li>
</ul>
<h2 id="2021-10-29">2021-10-29</h2>
<ul>
<li>Linode alerted me that CGSpace (linode18) has high outbound traffic for the last two hours
<ul>
<li>This has happened a few other times this week so I decided to go look at the Solr stats for today</li>
<li>I see 93.158.91.62 is making thousands of requests to Discover with a normal user agent:</li>
</ul>
</li>
</ul>
<pre tabindex="0"><code>Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/94.0.4606.81 Safari/537.36
</code></pre><ul>
<li>Even more annoying, they are not re-using their session ID:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ grep 93.158.91.62 log/dspace.log.2021-10-29 | grep -oE 'session_id=[A-Z0-9]{32}:ip_addr=' | sort | uniq | wc -l
4888
</code></pre><ul>
<li>This IP has made 36,000 requests to CGSpace&hellip;</li>
<li>The IP is owned by <a href="internetvikings.com">Internet Vikings</a> in Sweden</li>
<li>I purged their statistics and set up a temporary HTTP 403 telling them to use a real user agent</li>
<li>I see another one in Sweden a few days ago (192.36.109.131), also using the same exact user agent as above, but belonging to <a href="http://webb.resilans.se/">Resilans AB</a>
<ul>
<li>I purged another 74,619 hits from this bot</li>
</ul>
</li>
<li>I added these two IPs to the nginx IP bot identifier</li>
<li>Jesus I found a few Russian IPs attempting SQL injection and path traversal, ie:</li>
</ul>
<pre tabindex="0"><code>45.9.20.71 - - [20/Oct/2021:02:31:15 +0200] &quot;GET /bitstream/handle/10568/1820/Rhodesgrass.pdf?sequence=4&amp;OoxD=6591%20AND%201%3D1%20UNION%20ALL%20SELECT%201%2CNULL%2C%27%3Cscript%3Ealert%28%22XSS%22%29%3C%2Fscript%3E%27%2Ctable_name%20FROM%20information_schema.tables%20WHERE%202%3E1--%2F%2A%2A%2F%3B%20EXEC%20xp_cmdshell%28%27cat%20..%2F..%2F..%2Fetc%2Fpasswd%27%29%23 HTTP/1.1&quot; 200 143070 &quot;https://cgspace.cgiar.org:443/bitstream/handle/10568/1820/Rhodesgrass.pdf&quot; &quot;Mozilla/5.0 (X11; U; Linux i686; es-AR; rv:1.8.1.11) Gecko/20071204 Ubuntu/7.10 (gutsy) Firefox/2.0.0.11&quot;
</code></pre><ul>
<li>I reported them to AbuseIPDB.com and purged their hits:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ ./ilri/check-spider-ip-hits.sh -f /tmp/ip.txt -p
Purging 6364 hits from 45.9.20.71 in statistics
Purging 8039 hits from 45.146.166.157 in statistics
Purging 3383 hits from 45.155.204.82 in statistics
Total number of bot hits purged: 17786
</code></pre><h2 id="2021-10-31">2021-10-31</h2>
<ul>
<li>Update Docker containers for AReS on linode20 and run a fresh harvest</li>
<li>Found some strange IP (94.71.3.44) making 51,000 requests today with the user agent &ldquo;Microsoft Internet Explorer&rdquo;
<ul>
<li>It is in Greece, and it seems to be requesting each item&rsquo;s XMLUI full metadata view, so I suspect it&rsquo;s Gardian actually</li>
<li>I found it making another 25,000 requests yesterday&hellip;</li>
<li>I purged them from Solr</li>
</ul>
</li>
<li>Found 20,000 hits from Qualys (according to AbuseIPDB.com) using normal user agents&hellip; ugh, must be some ILRI ICT scan</li>
<li>Found more request from a Swedish IP (93.158.90.34) using that weird Firefox user agent that I noticed a few weeks ago:</li>
</ul>
<pre tabindex="0"><code>Mozilla/5.0 (Macintosh; Intel Mac OS X 11.1; rv:84.0) Gecko/20100101 Firefox/84.0
</code></pre><ul>
<li>That&rsquo;s from ASN 12552 (IPO-EU, SE), which is operated by Internet Vikings, though AbuseIPDB.com says it&rsquo;s <a href="availo.se">Availo Networks AB</a></li>
<li>There&rsquo;s another IP (3.225.28.105) that made a few thousand requests to the REST API from Amazon, though it&rsquo;s using a normal user agent</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console"># zgrep 3.225.28.105 /var/log/nginx/rest.log.* | wc -l
3991
~# zgrep 3.225.28.105 /var/log/nginx/rest.log.* | grep -oE 'GET /rest/(collections|handle|items)' | sort | uniq -c
3154 GET /rest/collections
427 GET /rest/handle
410 GET /rest/items
</code></pre><ul>
<li>It requested the <a href="https://cgspace.cgiar.org/handle/10568/75560">CIAT Story Maps</a> collection over 3,000 times last month&hellip;
<ul>
<li>I will purge those hits</li>
</ul>
</li>
</ul>
<!-- raw HTML omitted -->
@ -791,8 +715,6 @@ Total number of bot hits purged: 17786
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -801,6 +723,8 @@ Total number of bot hits purged: 17786
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

180
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@ -1,180 +0,0 @@
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<html lang="en" >
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
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<meta property="article:published_time" content="2021-11-01T11:14:07+03:00" />
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<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="November, 2021"/>
<meta name="twitter:description" content="2021-11-01"/>
<meta name="generator" content="Hugo 0.88.1" />
<script type="application/ld+json">
{
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"headline": "November, 2021",
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"wordCount": "1",
"datePublished": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-11-01T11:14:07+03:00",
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},
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<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-11/">November, 2021</a></h2>
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<time datetime="2021-11-01T11:14:07+03:00">Mon Nov 01, 2021</time>
in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
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<h2 id="2021-11-01">2021-11-01</h2>
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<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
</ol>
</section>
<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
</ol>
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4
docs/404.html
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@ -95,8 +95,6 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -105,6 +103,8 @@
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

8
docs/categories/index.html
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -84,7 +84,7 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/categories/notes/">Notes</a></h2>
<p class="blog-post-meta"><time datetime="2021-11-01T11:14:07+03:00">Mon Nov 01, 2021</time> by Alan Orth</p>
<p class="blog-post-meta"><time datetime="2021-10-01T11:14:07+03:00">Fri Oct 01, 2021</time> by Alan Orth</p>
</header>
<a href='https://alanorth.github.io/cgspace-notes/categories/notes/'>Read more →</a>
@ -108,8 +108,6 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -118,6 +116,8 @@
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/categories/index.xml
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@ -6,11 +6,11 @@
<description>Recent content in Categories on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Mon, 01 Nov 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" />
<lastBuildDate>Fri, 01 Oct 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>Notes</title>
<link>https://alanorth.github.io/cgspace-notes/categories/notes/</link>
<pubDate>Mon, 01 Nov 2021 11:14:07 +0300</pubDate>
<pubDate>Fri, 01 Oct 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/categories/notes/</guid>
<description></description>

63
docs/categories/notes/index.html
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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -81,24 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-11/">November, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-11-01T11:14:07+03:00">Mon Nov 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-11-01">2021-11-01</h2>
<a href='https://alanorth.github.io/cgspace-notes/2021-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-10/">October, 2021</a></h2>
@ -344,6 +326,45 @@ COPY 20994
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -368,8 +389,6 @@ COPY 20994
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -378,6 +397,8 @@ COPY 20994
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

11
docs/categories/notes/index.xml
View File

@ -6,16 +6,7 @@
<description>Recent content in Notes on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Mon, 01 Nov 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>November, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-11/</link>
<pubDate>Mon, 01 Nov 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-11/</guid>
<description>&lt;h2 id=&#34;2021-11-01&#34;&gt;2021-11-01&lt;/h2&gt;</description>
</item>
<lastBuildDate>Fri, 01 Oct 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>October, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-10/</link>

71
docs/categories/notes/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -81,45 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
@ -371,6 +332,32 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a>
@ -395,8 +382,6 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -405,6 +390,8 @@
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

60
docs/categories/notes/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -81,32 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
@ -399,6 +373,34 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-07-01">2019-07-01</h2>
<ul>
<li>Create an &ldquo;AfricaRice books and book chapters&rdquo; collection on CGSpace for AfricaRice</li>
<li>Last month Sisay asked why the following &ldquo;most popular&rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
<ul>
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
</ul>
</li>
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/2/" rel="prev" role="button">Previous page</a>
@ -423,8 +425,6 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -433,6 +433,8 @@
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

58
docs/categories/notes/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -81,34 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-07-01">2019-07-01</h2>
<ul>
<li>Create an &ldquo;AfricaRice books and book chapters&rdquo; collection on CGSpace for AfricaRice</li>
<li>Last month Sisay asked why the following &ldquo;most popular&rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
<ul>
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
</ul>
</li>
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
@ -395,6 +367,30 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-09-02">2018-09-02</h2>
<ul>
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
<li>I&rsquo;ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
<li>Also, I&rsquo;ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
<li>I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/3/" rel="prev" role="button">Previous page</a>
@ -419,8 +415,6 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -429,6 +423,8 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

63
docs/categories/notes/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -81,30 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-09-02">2018-09-02</h2>
<ul>
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
<li>I&rsquo;ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
<li>Also, I&rsquo;ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
<li>I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
@ -404,6 +380,39 @@ dspace.log.2018-01-02:34
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-11-01">2017-11-01</h2>
<ul>
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
</ul>
<h2 id="2017-11-02">2017-11-02</h2>
<ul>
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
</ul>
<pre tabindex="0"><code># grep -c &quot;CORE&quot; /var/log/nginx/access.log
0
</code></pre><ul>
<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
</ul>
<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/4/" rel="prev" role="button">Previous page</a>
@ -428,8 +437,6 @@ dspace.log.2018-01-02:34
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -438,6 +445,8 @@ dspace.log.2018-01-02:34
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

39
docs/categories/notes/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -81,39 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-11-01">2017-11-01</h2>
<ul>
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
</ul>
<h2 id="2017-11-02">2017-11-02</h2>
<ul>
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
</ul>
<pre tabindex="0"><code># grep -c &quot;CORE&quot; /var/log/nginx/access.log
0
</code></pre><ul>
<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
</ul>
<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
@ -183,8 +150,6 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -193,6 +158,8 @@ COPY 54701
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/cgiar-library-migration/index.html
View File

@ -282,8 +282,6 @@ dspace=# select setval('handle_seq',86873);
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -292,6 +290,8 @@ dspace=# select setval('handle_seq',86873);
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/cgspace-cgcorev2-migration/index.html
View File

@ -467,8 +467,6 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -477,6 +475,8 @@
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

4
docs/cgspace-dspace6-upgrade/index.html
View File

@ -471,8 +471,6 @@ $ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2018
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -481,6 +479,8 @@ $ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2018
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

65
docs/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-10-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,24 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-11/">November, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-11-01T11:14:07+03:00">Mon Nov 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-11-01">2021-11-01</h2>
<a href='https://alanorth.github.io/cgspace-notes/2021-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-10/">October, 2021</a></h2>
@ -359,6 +341,45 @@ COPY 20994
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -383,8 +404,6 @@ COPY 20994
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -393,6 +412,8 @@ COPY 20994
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

11
docs/index.xml
View File

@ -6,16 +6,7 @@
<description>Recent content on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Mon, 01 Nov 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>November, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-11/</link>
<pubDate>Mon, 01 Nov 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-11/</guid>
<description>&lt;h2 id=&#34;2021-11-01&#34;&gt;2021-11-01&lt;/h2&gt;</description>
</item>
<lastBuildDate>Fri, 01 Oct 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>October, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-10/</link>

73
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View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-10-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,45 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
@ -386,6 +347,32 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
@ -410,8 +397,6 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -420,6 +405,8 @@
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

62
docs/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-10-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,32 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
@ -414,6 +388,34 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-07-01">2019-07-01</h2>
<ul>
<li>Create an &ldquo;AfricaRice books and book chapters&rdquo; collection on CGSpace for AfricaRice</li>
<li>Last month Sisay asked why the following &ldquo;most popular&rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
<ul>
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
</ul>
</li>
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
@ -438,8 +440,6 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -448,6 +448,8 @@
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

60
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View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-10-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,34 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-07-01T12:13:51+03:00">Mon Jul 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-07-01">2019-07-01</h2>
<ul>
<li>Create an &ldquo;AfricaRice books and book chapters&rdquo; collection on CGSpace for AfricaRice</li>
<li>Last month Sisay asked why the following &ldquo;most popular&rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
<ul>
<li><a href="https://dspacetest.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">DSpace Test</a></li>
<li><a href="https://cgspace.cgiar.org/handle/10568/35697/most-popular/item#simplefilter=custom&amp;time_filter_end_date=01%2F12%2F2018">CGSpace</a></li>
</ul>
</li>
<li>Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
@ -410,6 +382,30 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-09-02">2018-09-02</h2>
<ul>
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
<li>I&rsquo;ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
<li>Also, I&rsquo;ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
<li>I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
@ -434,8 +430,6 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -444,6 +438,8 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

65
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View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-10-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,30 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-09-02T09:55:54+03:00">Sun Sep 02, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-09-02">2018-09-02</h2>
<ul>
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
<li>I&rsquo;ll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
<li>Also, I&rsquo;ll re-run the <code>postgresql</code> tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month</li>
<li>I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-09/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
@ -419,6 +395,39 @@ dspace.log.2018-01-02:34
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-11-01">2017-11-01</h2>
<ul>
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
</ul>
<h2 id="2017-11-02">2017-11-02</h2>
<ul>
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
</ul>
<pre tabindex="0"><code># grep -c &quot;CORE&quot; /var/log/nginx/access.log
0
</code></pre><ul>
<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
</ul>
<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/4/" rel="prev" role="button">Previous page</a>
@ -443,8 +452,6 @@ dspace.log.2018-01-02:34
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -453,6 +460,8 @@ dspace.log.2018-01-02:34
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

75
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View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-10-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,39 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-11-02T09:37:54+02:00">Thu Nov 02, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2017-11-01">2017-11-01</h2>
<ul>
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
</ul>
<h2 id="2017-11-02">2017-11-02</h2>
<ul>
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
</ul>
<pre tabindex="0"><code># grep -c &quot;CORE&quot; /var/log/nginx/access.log
0
</code></pre><ul>
<li>Generate list of authors on CGSpace for Peter to go through and correct:</li>
</ul>
<pre tabindex="0"><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2017-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
@ -366,6 +333,40 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-02-07T07:04:52-08:00">Tue Feb 07, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-02-07">2017-02-07</h2>
<ul>
<li>An item was mapped twice erroneously again, so I had to remove one of the mappings manually:</li>
</ul>
<pre tabindex="0"><code>dspace=# select * from collection2item where item_id = '80278';
id | collection_id | item_id
-------+---------------+---------
92551 | 313 | 80278
92550 | 313 | 80278
90774 | 1051 | 80278
(3 rows)
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
DELETE 1
</code></pre><ul>
<li>Create issue on GitHub to track the addition of CCAFS Phase II project tags (<a href="https://github.com/ilri/DSpace/issues/301">#301</a>)</li>
<li>Looks like we&rsquo;ll be using <code>cg.identifier.ccafsprojectpii</code> as the field name</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/5/" rel="prev" role="button">Previous page</a>
@ -390,8 +391,6 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -400,6 +399,8 @@ COPY 54701
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

67
docs/page/7/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-10-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,40 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-02-07T07:04:52-08:00">Tue Feb 07, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-02-07">2017-02-07</h2>
<ul>
<li>An item was mapped twice erroneously again, so I had to remove one of the mappings manually:</li>
</ul>
<pre tabindex="0"><code>dspace=# select * from collection2item where item_id = '80278';
id | collection_id | item_id
-------+---------------+---------
92551 | 313 | 80278
92550 | 313 | 80278
90774 | 1051 | 80278
(3 rows)
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
DELETE 1
</code></pre><ul>
<li>Create issue on GitHub to track the addition of CCAFS Phase II project tags (<a href="https://github.com/ilri/DSpace/issues/301">#301</a>)</li>
<li>Looks like we&rsquo;ll be using <code>cg.identifier.ccafsprojectpii</code> as the field name</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
@ -375,6 +341,31 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-04-04T11:06:00+03:00">Mon Apr 04, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-04-04">2016-04-04</h2>
<ul>
<li>Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit</li>
<li>We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc</li>
<li>After running DSpace for over five years I&rsquo;ve never needed to look in any other log file than dspace.log, leave alone one from last year!</li>
<li>This will save us a few gigs of backup space we&rsquo;re paying for on S3</li>
<li>Also, I noticed the <code>checker</code> log has some errors we should pay attention to:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-04/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/6/" rel="prev" role="button">Previous page</a>
@ -399,8 +390,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -409,6 +398,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

33
docs/page/8/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-10-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,31 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-04-04T11:06:00+03:00">Mon Apr 04, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-04-04">2016-04-04</h2>
<ul>
<li>Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit</li>
<li>We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc</li>
<li>After running DSpace for over five years I&rsquo;ve never needed to look in any other log file than dspace.log, leave alone one from last year!</li>
<li>This will save us a few gigs of backup space we&rsquo;re paying for on S3</li>
<li>Also, I noticed the <code>checker</code> log has some errors we should pay attention to:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
@ -271,8 +246,6 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -281,6 +254,8 @@
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

65
docs/posts/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-10-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,24 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-11/">November, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-11-01T11:14:07+03:00">Mon Nov 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-11-01">2021-11-01</h2>
<a href='https://alanorth.github.io/cgspace-notes/2021-11/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-10/">October, 2021</a></h2>
@ -359,6 +341,45 @@ COPY 20994
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -383,8 +404,6 @@ COPY 20994
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -393,6 +412,8 @@ COPY 20994
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

11
docs/posts/index.xml
View File

@ -6,16 +6,7 @@
<description>Recent content in Posts on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Mon, 01 Nov 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>November, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-11/</link>
<pubDate>Mon, 01 Nov 2021 11:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-11/</guid>
<description>&lt;h2 id=&#34;2021-11-01&#34;&gt;2021-11-01&lt;/h2&gt;</description>
</item>
<lastBuildDate>Fri, 01 Oct 2021 11:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>October, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-10/</link>

73
docs/posts/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-11-01T10:48:13+02:00" />
<meta property="og:updated_time" content="2021-10-24T21:21:01+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2021-11-01T11:14:07+03:00",
"dateModified": "2021-10-01T11:14:07+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,45 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-02/">February, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-02-01T10:13:54+02:00">Mon Feb 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-02-01">2021-02-01</h2>
<ul>
<li>Abenet said that CIP found more duplicate records in their export from AReS
<ul>
<li>I re-opened <a href="https://github.com/ilri/OpenRXV/issues/67">the issue</a> on OpenRXV where we had previously noticed this</li>
<li>The shared link where the duplicates are is here: <a href="https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6">https://cgspace.cgiar.org/explorer/shared/heEOz3YBnXdK69bR2ra6</a></li>
</ul>
</li>
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
<li>Check the results of the AReS harvesting from last night:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
{
&quot;count&quot; : 100875,
&quot;_shards&quot; : {
&quot;total&quot; : 1,
&quot;successful&quot; : 1,
&quot;skipped&quot; : 0,
&quot;failed&quot; : 0
}
}
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2021-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
@ -386,6 +347,32 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-05/">May, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-05-02T09:52:04+03:00">Sat May 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-05-02">2020-05-02</h2>
<ul>
<li>Peter said that CTA is having problems submitting an item to CGSpace
<ul>
<li>Looking at the PostgreSQL stats it seems to be the same issue that Tezira was having last week, as I see the number of connections in &lsquo;idle in transaction&rsquo; and &lsquo;waiting for lock&rsquo; state are increasing again</li>
<li>I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2.11, and there were some bugs related to transactions fixed in 42.2.12 (which I had updated in the Ansible playbooks, but not deployed yet)</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -410,8 +397,6 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-11/">November, 2021</a></li>
<li><a href="/cgspace-notes/2021-10/">October, 2021</a></li>
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
@ -420,6 +405,8 @@
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
</ol>
</section>

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