Add notes for 2022-01-09

content/posts/2021-12.md

@@ -221,7 +221,7 @@ Found 2 error(s).
   - For now I just ran all the system updates and rebooted the machine (linode20)
   - Then I started a fresh harvest
 - Now I cleared all images on my local machine and I get the same error when building the backend
-  - It seems to be related to `@elastic/elasticsearch-js`](https://github.com/elastic/elasticsearch-js), which our `package.json` pins with version `^7.13.0"
+  - It seems to be related to `@elastic/elasticsearch-js`](https://github.com/elastic/elasticsearch-js), which our `package.json` pins with version `^7.13.0`
   - I see that AReS is currently using 7.15.0 in its `package-lock.json`, and 7.16.0 was released four days ago so perhaps it's that...
   - Pinning `~7.15.0` allows nest to build fine...
   - I made a pull request 

content/posts/2022-01.md

@@ -24,4 +24,43 @@ dc.contributor.author,cg.creator.identifier
 $ ./ilri/add-orcid-identifiers-csv.py -i 2022-01-06-add-orcids.csv -db dspace63 -u dspacetest -p 'dom@in34sniper' 
 ```
 
+## 2022-01-09
+
+- Validate and register CGSpace on [OpenArchives](https://www.openarchives.org/Register/ValidateSite?log=Z2V7WCT7)
+  - Last month IWMI colleagues were asking me to look into this, and after checking the OpenArchives mailing list it seems there was a problem on the server side
+  - Now it has worked and the message is "Successfully updated OAI registration database to status COMPLIANT."
+  - I received an email (as the Admin contact on our OAI) that says:
+
+> Your repository has been registered in the OAI database of conforming repositories.
+
+- Now I'm taking a screenshot of the validation page for posterity, because the logs seem to go away after some time
+
+![OpenArchives.org registration](/cgspace-notes/2022/01/openarchives-registration.png)
+
+- I tried to re-build the Docker image for OpenRXV and got an error in the backend:
+
+```console
+...
+> openrxv-backend@0.0.1 build
+> nest build
+
+node_modules/@elastic/elasticsearch/api/types.d.ts:2454:13 - error TS2456: Type alias 'AggregationsAggregate' circularly references itself.
+
+2454 export type AggregationsAggregate = AggregationsSingleBucketAggregate | AggregationsAutoDateHistogramAggregate | AggregationsFiltersAggregate | AggregationsSignificantTermsAggregate<any> | AggregationsTermsAggregate<any> | AggregationsBucketAggregate | AggregationsCompositeBucketAggregate | AggregationsMultiBucketAggregate<AggregationsBucket> | AggregationsMatrixStatsAggregate | AggregationsKeyedValueAggregate | AggregationsMetricAggregate
+                 ~~~~~~~~~~~~~~~~~~~~~
+node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type alias 'AggregationsSingleBucketAggregate' circularly references itself.
+
+3209 export type AggregationsSingleBucketAggregate = AggregationsSingleBucketAggregateKeys
+                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+Found 2 error(s).
+```
+
+- Ah, it seems the code on the server was slightly out of date
+  - I checked out the latest master branch and it built
+
+## 2022-01-12
+
+- Fix some citation formatting issues in Gaia's [eighteen CAS Green Cover publications on DSpace Test](https://dspacetest.cgiar.org/handle/10568/115230)
+
 <!-- vim: set sw=2 ts=2: -->

docs/2021-12/index.html

@@ -22,7 +22,7 @@ Total number of bot hits purged: 3679
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-12/" />
 <meta property="article:published_time" content="2021-12-01T16:07:07+02:00" />
-<meta property="article:modified_time" content="2021-12-29T16:29:37+02:00" />
+<meta property="article:modified_time" content="2022-01-09T10:39:51+02:00" />
 
 
 
@@ -52,7 +52,7 @@ Total number of bot hits purged: 3679
   "url": "https://alanorth.github.io/cgspace-notes/2021-12/",
   "wordCount": "2686",
   "datePublished": "2021-12-01T16:07:07+02:00",
-  "dateModified": "2021-12-29T16:29:37+02:00",
+  "dateModified": "2022-01-09T10:39:51+02:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -381,7 +381,7 @@ node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type
 </li>
 <li>Now I cleared all images on my local machine and I get the same error when building the backend
 <ul>
-<li>It seems to be related to <code>@elastic/elasticsearch-js</code>](<a href="https://github.com/elastic/elasticsearch-js)">https://github.com/elastic/elasticsearch-js)</a>, which our <code>package.json</code> pins with version `^7.13.0&quot;</li>
+<li>It seems to be related to <code>@elastic/elasticsearch-js</code>](<a href="https://github.com/elastic/elasticsearch-js)">https://github.com/elastic/elasticsearch-js)</a>, which our <code>package.json</code> pins with version <code>^7.13.0</code></li>
 <li>I see that AReS is currently using 7.15.0 in its <code>package-lock.json</code>, and 7.16.0 was released four days ago so perhaps it&rsquo;s that&hellip;</li>
 <li>Pinning <code>~7.15.0</code> allows nest to build fine&hellip;</li>
 <li>I made a pull request</li>

docs/2022-01/index.html

@@ -14,7 +14,7 @@ Start a full harvest on AReS
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-01/" />
 <meta property="article:published_time" content="2022-01-01T15:20:54+02:00" />
-<meta property="article:modified_time" content="2022-01-01T15:21:32+02:00" />
+<meta property="article:modified_time" content="2022-01-06T15:48:27+02:00" />
 
 
 
@@ -34,9 +34,9 @@ Start a full harvest on AReS
   "@type": "BlogPosting",
   "headline": "January, 2022",
   "url": "https://alanorth.github.io/cgspace-notes/2022-01/",
-  "wordCount": "47",
+  "wordCount": "263",
   "datePublished": "2022-01-01T15:20:54+02:00",
-  "dateModified": "2022-01-01T15:21:32+02:00",
+  "dateModified": "2022-01-06T15:48:27+02:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -127,7 +127,52 @@ dc.contributor.author,cg.creator.identifier
 &#34;Jones, Chris&#34;,&#34;Chris Jones: 0000-0001-9096-9728&#34;
 &#34;Jones, Christopher S.&#34;,&#34;Chris Jones: 0000-0001-9096-9728&#34;
 $ ./ilri/add-orcid-identifiers-csv.py -i 2022-01-06-add-orcids.csv -db dspace63 -u dspacetest -p <span style="color:#e6db74">&#39;dom@in34sniper&#39;</span> 
-</code></pre></div><!-- raw HTML omitted -->
+</code></pre></div><h2 id="2022-01-09">2022-01-09</h2>
+<ul>
+<li>Validate and register CGSpace on <a href="https://www.openarchives.org/Register/ValidateSite?log=Z2V7WCT7">OpenArchives</a>
+<ul>
+<li>Last month IWMI colleagues were asking me to look into this, and after checking the OpenArchives mailing list it seems there was a problem on the server side</li>
+<li>Now it has worked and the message is &ldquo;Successfully updated OAI registration database to status COMPLIANT.&rdquo;</li>
+<li>I received an email (as the Admin contact on our OAI) that says:</li>
+</ul>
+</li>
+</ul>
+<blockquote>
+<p>Your repository has been registered in the OAI database of conforming repositories.</p>
+</blockquote>
+<ul>
+<li>Now I&rsquo;m taking a screenshot of the validation page for posterity, because the logs seem to go away after some time</li>
+</ul>
+<p><img src="/cgspace-notes/2022/01/openarchives-registration.png" alt="OpenArchives.org registration"></p>
+<ul>
+<li>I tried to re-build the Docker image for OpenRXV and got an error in the backend:</li>
+</ul>
+<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">...
+&gt; openrxv-backend@0.0.1 build
+&gt; nest build
+<span style="color:#960050;background-color:#1e0010">
+</span><span style="color:#960050;background-color:#1e0010"></span>node_modules/@elastic/elasticsearch/api/types.d.ts:2454:13 - error TS2456: Type alias &#39;AggregationsAggregate&#39; circularly references itself.
+<span style="color:#960050;background-color:#1e0010">
+</span><span style="color:#960050;background-color:#1e0010"></span>2454 export type AggregationsAggregate = AggregationsSingleBucketAggregate | AggregationsAutoDateHistogramAggregate | AggregationsFiltersAggregate | AggregationsSignificantTermsAggregate&lt;any&gt; | AggregationsTermsAggregate&lt;any&gt; | AggregationsBucketAggregate | AggregationsCompositeBucketAggregate | AggregationsMultiBucketAggregate&lt;AggregationsBucket&gt; | AggregationsMatrixStatsAggregate | AggregationsKeyedValueAggregate | AggregationsMetricAggregate
+                 ~~~~~~~~~~~~~~~~~~~~~
+node_modules/@elastic/elasticsearch/api/types.d.ts:3209:13 - error TS2456: Type alias &#39;AggregationsSingleBucketAggregate&#39; circularly references itself.
+<span style="color:#960050;background-color:#1e0010">
+</span><span style="color:#960050;background-color:#1e0010"></span>3209 export type AggregationsSingleBucketAggregate = AggregationsSingleBucketAggregateKeys
+                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+<span style="color:#960050;background-color:#1e0010">
+</span><span style="color:#960050;background-color:#1e0010"></span>Found 2 error(s).
+</code></pre></div><ul>
+<li>Ah, it seems the code on the server was slightly out of date
+<ul>
+<li>I checked out the latest master branch and it built</li>
+</ul>
+</li>
+</ul>
+<h2 id="2022-01-12">2022-01-12</h2>
+<ul>
+<li>Fix some citation formatting issues in Gaia&rsquo;s <a href="https://dspacetest.cgiar.org/handle/10568/115230">eighteen CAS Green Cover publications on DSpace Test</a></li>
+</ul>
+<!-- raw HTML omitted -->
 
   
 

docs/categories/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
-<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
+<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />
 
 
 

docs/categories/notes/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
-<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
+<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />
 
 
 

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@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
-<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
+<meta property="og:updated_time" content="2022-01-09T10:39:51+02:00" />
 
 
 

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@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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-<meta property="og:updated_time" content="2022-01-01T15:21:32+02:00" />
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docs/index.html

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