Add notes for 2021-09-20

content/posts/2020-01.md

@@ -10,7 +10,7 @@ categories: ["Notes"]
 - Open [a ticket](https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=706) with Atmire to request a quote for the upgrade to DSpace 6
 - Last week Altmetric responded about the [item](https://hdl.handle.net/10568/97087) that had a lower score than than its DOI
   - The score is now linked to the DOI
-  - Another [item](https://handle.hdl.net/10568/91278) that had the same problem in 2019 has now also linked to the score for its DOI
+  - Another [item](https://hdl.handle.net/10568/91278) that had the same problem in 2019 has now also linked to the score for its DOI
   - Another [item](https://hdl.handle.net/10568/81236) that had the same problem in 2019 has also been fixed
 
 ## 2020-01-07

content/posts/2021-09.md

@@ -176,4 +176,39 @@ $ docker images | grep -v ^REPO | sed 's/ \+/:/g' | cut -d: -f1,2 | xargs -L1 do
 $ docker-compose build
 ```
 
+## 2021-09-20
+
+- I synchronized the production CGSpace PostreSQL, Solr, and Assetstore data with DSpace Test
+- Over the weekend a few users reported that they could not log into CGSpace
+  - I checked LDAP and it seems there is something wrong:
+
+```console
+$ ldapsearch -x -H ldaps://AZCGNEROOT2.CGIARAD.ORG:636/ -b "dc=cgiarad,dc=org" -D "cgspace-ldap-account@cgiarad.org" -W "(sAMAccountName=someaccountnametocheck)"
+Enter LDAP Password: 
+ldap_sasl_bind(SIMPLE): Can't contact LDAP server (-1)
+```
+
+- I sent a message to CGNET to ask about the server settings and see if our IP is still whitelisted
+  - It turns out that CGNET created a new Active Directory server (AZCGNEROOT3.cgiarad.org) and decomissioned the old one last week
+  - I updated the configuration on CGSpace and confirmed that it is working
+- Create another test account for Rafael from Bioversity-CIAT to submit some items to DSpace Test:
+
+```console
+$ dspace user -a -m tip-submit@cgiar.org -g CIAT -s Submit -p 'fuuuuuuuu'
+```
+
+- I added the account to the Alliance Admins account, which is should allow him to submit to any Alliance collection
+  - According to my notes from [2020-10]({{< relref "2020-10.md" >}}) the account must be in the admin group in order to submit via the REST API
+- Run `dspace cleanup -v` process on CGSpace to clean up old bitstreams
+- Export lists of authors, donors, and affiliations for Peter Ballantyne to clean up:
+
+```console
+localhost/dspace63= > \COPY (SELECT DISTINCT text_value as "dc.contributor.author", count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 3 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-09-20-authors.csv WITH CSV HEADER;
+COPY 80901
+localhost/dspace63= > \COPY (SELECT DISTINCT text_value as "cg.contributor.donor", count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 248 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-09-20-donors.csv WITH CSV HEADER;
+COPY 1274
+localhost/dspace63= > \COPY (SELECT DISTINCT text_value as "cg.contributor.affiliation", count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-09-20-affiliations.csv WITH CSV HEADER;
+COPY 8091
+```
+
 <!-- vim: set sw=2 ts=2: -->

docs/2020-01/index.html

@@ -30,7 +30,7 @@ I tweeted the CGSpace repository link
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-01/" />
 <meta property="article:published_time" content="2020-01-06T10:48:30+02:00" />
-<meta property="article:modified_time" content="2020-03-12T12:58:21+02:00" />
+<meta property="article:modified_time" content="2021-09-20T15:47:34+03:00" />
 
 
 
@@ -68,7 +68,7 @@ I tweeted the CGSpace repository link
   "url": "https://alanorth.github.io/cgspace-notes/2020-01/",
   "wordCount": "3523",
   "datePublished": "2020-01-06T10:48:30+02:00",
-  "dateModified": "2020-03-12T12:58:21+02:00",
+  "dateModified": "2021-09-20T15:47:34+03:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -148,7 +148,7 @@ I tweeted the CGSpace repository link
 <li>Last week Altmetric responded about the <a href="https://hdl.handle.net/10568/97087">item</a> that had a lower score than than its DOI
 <ul>
 <li>The score is now linked to the DOI</li>
-<li>Another <a href="https://handle.hdl.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
+<li>Another <a href="https://hdl.handle.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
 <li>Another <a href="https://hdl.handle.net/10568/81236">item</a> that had the same problem in 2019 has also been fixed</li>
 </ul>
 </li>

docs/2021-09/index.html

@@ -26,7 +26,7 @@ The syntax Moayad showed me last month doesn’t seem to honor the search qu
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-09/" />
 <meta property="article:published_time" content="2021-09-01T09:14:07+03:00" />
-<meta property="article:modified_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="article:modified_time" content="2021-09-19T15:42:23+03:00" />
 
 
 
@@ -58,9 +58,9 @@ The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search qu
   "@type": "BlogPosting",
   "headline": "September, 2021",
   "url": "https://alanorth.github.io/cgspace-notes/2021-09/",
-  "wordCount": "1221",
+  "wordCount": "1532",
   "datePublished": "2021-09-01T09:14:07+03:00",
-  "dateModified": "2021-09-17T15:03:28+03:00",
+  "dateModified": "2021-09-19T15:42:23+03:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -340,6 +340,43 @@ dspace.log.2021-09-17:15235
 </ul>
 <pre tabindex="0"><code class="language-console" data-lang="console">$ docker images | grep -v ^REPO | sed 's/ \+/:/g' | cut -d: -f1,2 | xargs -L1 docker pull
 $ docker-compose build
+</code></pre><h2 id="2021-09-20">2021-09-20</h2>
+<ul>
+<li>I synchronized the production CGSpace PostreSQL, Solr, and Assetstore data with DSpace Test</li>
+<li>Over the weekend a few users reported that they could not log into CGSpace
+<ul>
+<li>I checked LDAP and it seems there is something wrong:</li>
+</ul>
+</li>
+</ul>
+<pre tabindex="0"><code class="language-console" data-lang="console">$ ldapsearch -x -H ldaps://AZCGNEROOT2.CGIARAD.ORG:636/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;cgspace-ldap-account@cgiarad.org&quot; -W &quot;(sAMAccountName=someaccountnametocheck)&quot;
+Enter LDAP Password: 
+ldap_sasl_bind(SIMPLE): Can't contact LDAP server (-1)
+</code></pre><ul>
+<li>I sent a message to CGNET to ask about the server settings and see if our IP is still whitelisted
+<ul>
+<li>It turns out that CGNET created a new Active Directory server (AZCGNEROOT3.cgiarad.org) and decomissioned the old one last week</li>
+<li>I updated the configuration on CGSpace and confirmed that it is working</li>
+</ul>
+</li>
+<li>Create another test account for Rafael from Bioversity-CIAT to submit some items to DSpace Test:</li>
+</ul>
+<pre tabindex="0"><code class="language-console" data-lang="console">$ dspace user -a -m tip-submit@cgiar.org -g CIAT -s Submit -p 'fuuuuuuuu'
+</code></pre><ul>
+<li>I added the account to the Alliance Admins account, which is should allow him to submit to any Alliance collection
+<ul>
+<li>According to my notes from <a href="/cgspace-notes/2020-10/">2020-10</a> the account must be in the admin group in order to submit via the REST API</li>
+</ul>
+</li>
+<li>Run <code>dspace cleanup -v</code> process on CGSpace to clean up old bitstreams</li>
+<li>Export lists of authors, donors, and affiliations for Peter Ballantyne to clean up:</li>
+</ul>
+<pre tabindex="0"><code class="language-console" data-lang="console">localhost/dspace63= &gt; \COPY (SELECT DISTINCT text_value as &quot;dc.contributor.author&quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 3 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-09-20-authors.csv WITH CSV HEADER;
+COPY 80901
+localhost/dspace63= &gt; \COPY (SELECT DISTINCT text_value as &quot;cg.contributor.donor&quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 248 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-09-20-donors.csv WITH CSV HEADER;
+COPY 1274
+localhost/dspace63= &gt; \COPY (SELECT DISTINCT text_value as &quot;cg.contributor.affiliation&quot;, count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-09-20-affiliations.csv WITH CSV HEADER;
+COPY 8091
 </code></pre><!-- raw HTML omitted -->
 
   

docs/categories/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/categories/notes/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/categories/notes/index.xml

@@ -439,7 +439,7 @@ COPY 20994
 <li>Last week Altmetric responded about the <a href="https://hdl.handle.net/10568/97087">item</a> that had a lower score than than its DOI
 <ul>
 <li>The score is now linked to the DOI</li>
-<li>Another <a href="https://handle.hdl.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
+<li>Another <a href="https://hdl.handle.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
 <li>Another <a href="https://hdl.handle.net/10568/81236">item</a> that had the same problem in 2019 has also been fixed</li>
 </ul>
 </li>

docs/categories/notes/page/2/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/categories/notes/page/3/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 
@@ -154,7 +154,7 @@
 <li>Last week Altmetric responded about the <a href="https://hdl.handle.net/10568/97087">item</a> that had a lower score than than its DOI
 <ul>
 <li>The score is now linked to the DOI</li>
-<li>Another <a href="https://handle.hdl.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
+<li>Another <a href="https://hdl.handle.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
 <li>Another <a href="https://hdl.handle.net/10568/81236">item</a> that had the same problem in 2019 has also been fixed</li>
 </ul>
 </li>

docs/categories/notes/page/4/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/categories/notes/page/5/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/categories/notes/page/6/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/index.xml

@@ -439,7 +439,7 @@ COPY 20994
 <li>Last week Altmetric responded about the <a href="https://hdl.handle.net/10568/97087">item</a> that had a lower score than than its DOI
 <ul>
 <li>The score is now linked to the DOI</li>
-<li>Another <a href="https://handle.hdl.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
+<li>Another <a href="https://hdl.handle.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
 <li>Another <a href="https://hdl.handle.net/10568/81236">item</a> that had the same problem in 2019 has also been fixed</li>
 </ul>
 </li>

docs/page/2/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/page/3/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 
@@ -169,7 +169,7 @@
 <li>Last week Altmetric responded about the <a href="https://hdl.handle.net/10568/97087">item</a> that had a lower score than than its DOI
 <ul>
 <li>The score is now linked to the DOI</li>
-<li>Another <a href="https://handle.hdl.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
+<li>Another <a href="https://hdl.handle.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
 <li>Another <a href="https://hdl.handle.net/10568/81236">item</a> that had the same problem in 2019 has also been fixed</li>
 </ul>
 </li>

docs/page/4/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/page/5/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/page/6/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/page/7/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/page/8/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/posts/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/posts/index.xml

@@ -439,7 +439,7 @@ COPY 20994
 <li>Last week Altmetric responded about the <a href="https://hdl.handle.net/10568/97087">item</a> that had a lower score than than its DOI
 <ul>
 <li>The score is now linked to the DOI</li>
-<li>Another <a href="https://handle.hdl.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
+<li>Another <a href="https://hdl.handle.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
 <li>Another <a href="https://hdl.handle.net/10568/81236">item</a> that had the same problem in 2019 has also been fixed</li>
 </ul>
 </li>

docs/posts/page/2/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/posts/page/3/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 
@@ -169,7 +169,7 @@
 <li>Last week Altmetric responded about the <a href="https://hdl.handle.net/10568/97087">item</a> that had a lower score than than its DOI
 <ul>
 <li>The score is now linked to the DOI</li>
-<li>Another <a href="https://handle.hdl.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
+<li>Another <a href="https://hdl.handle.net/10568/91278">item</a> that had the same problem in 2019 has now also linked to the score for its DOI</li>
 <li>Another <a href="https://hdl.handle.net/10568/81236">item</a> that had the same problem in 2019 has also been fixed</li>
 </ul>
 </li>

docs/posts/page/4/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/posts/page/5/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
-<meta property="og:updated_time" content="2021-09-17T15:03:28+03:00" />
+<meta property="og:updated_time" content="2021-09-20T15:47:34+03:00" />
 
 
 

docs/posts/page/6/index.html

@@ -10,7 +10,7 @@
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docs/posts/page/7/index.html

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docs/posts/page/8/index.html

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docs/sitemap.xml

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