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No commits in common. "2441d8ffd517349a496c548512d3b1420b868c77" and "c617679b73a97643c42e4c4d7ae93de6f4921637" have entirely different histories.

111 changed files with 792 additions and 1360 deletions

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@ -338,7 +338,7 @@ $ curl -X POST 'https://cgspace.cgiar.org/explorer/api/search?scroll=1d' \
} }
} }
}' }'
$ curl -X POST 'https://cgspace.cgiar.org/explorer/api/search/scroll/DXF1ZXJ5QW5kRmV0Y2gBAAAAAAAASekWMTRwZ3lEMkVRYUtKZjgyMno4dV9CUQ==' $ curl -X POST 'https://cgspace.cgiar.org/explorer/api/search/scroll/DXF1ZXJ5QW5kRmV0Y2gBAAAAAAAASekWMTRwZ3lEMkVRYUtKZjgyMno4dV9CUQ==
``` ```
- This uses the Elasticsearch scroll ID to page through results - This uses the Elasticsearch scroll ID to page through results
@ -432,4 +432,4 @@ $ ./ilri/add-orcid-identifiers-csv.py -i 2021-08-25-add-orcids.csv -db dspace -u
- Today I merged the changes to the master branch and re-deployed AReS on linode20 - Today I merged the changes to the master branch and re-deployed AReS on linode20
- Because the `docker-compose.yml` moved to the root the Docker volume prefix changed from `docker_` to `openrxv_` so I had to stop the containers and rsync the data from the old volume to the new one in /var/lib/docker - Because the `docker-compose.yml` moved to the root the Docker volume prefix changed from `docker_` to `openrxv_` so I had to stop the containers and rsync the data from the old volume to the new one in /var/lib/docker
<!-- vim: set sw=2 ts=2: --> <!-- v[im: set sw=2 ts=2: -->

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@ -1,19 +0,0 @@
---
title: "September, 2021"
date: 2021-09-01T09:14:07+03:00
author: "Alan Orth"
categories: ["Notes"]
---
## 2021-09-02
- Troubleshooting the missing Altmetric scores on AReS
- Turns out that I didn't actually fix them last month because the check for `content.altmetric` still exists, and I can't access the DOIs using `_h.source.DOI` for some reason
- I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!
- I will change `DOI` to `tomato` in the repository setup and start a re-harvest... I need to see if this is some kind of reserved word or something...
- I'm having problems using the OpenRXV API
- The syntax Moayad showed me last month doesn't seem to honor the search query properly...
<!--more-->
<!-- vim: set sw=2 ts=2: -->

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@ -242,8 +242,6 @@ db.statementpool = true
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -252,6 +250,8 @@ db.statementpool = true
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -264,8 +264,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -274,6 +272,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -200,8 +200,6 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -210,6 +208,8 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} ; | sor
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -378,8 +378,6 @@ Bitstream: tést señora alimentación.pdf
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -388,6 +386,8 @@ Bitstream: tést señora alimentación.pdf
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -316,8 +316,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -326,6 +324,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -495,8 +495,6 @@ dspace.log.2016-04-27:7271
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -505,6 +503,8 @@ dspace.log.2016-04-27:7271
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -371,8 +371,6 @@ sys 0m20.540s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -381,6 +379,8 @@ sys 0m20.540s
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -409,8 +409,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -419,6 +417,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -325,8 +325,6 @@ discovery.index.authority.ignore-variants=true
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -335,6 +333,8 @@ discovery.index.authority.ignore-variants=true
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -389,8 +389,6 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -399,6 +397,8 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -606,8 +606,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -616,6 +614,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -372,8 +372,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -382,6 +380,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -548,8 +548,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -558,6 +556,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -784,8 +784,6 @@ $ exit
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -794,6 +792,8 @@ $ exit
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -369,8 +369,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -379,6 +377,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -424,8 +424,6 @@ COPY 1968
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -434,6 +432,8 @@ COPY 1968
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -355,8 +355,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -365,6 +363,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -585,8 +585,6 @@ $ gem install compass -v 1.0.3
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -595,6 +593,8 @@ $ gem install compass -v 1.0.3
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -391,8 +391,6 @@ UPDATE 187
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -401,6 +399,8 @@ UPDATE 187
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -270,8 +270,6 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -280,6 +278,8 @@ $ JAVA_OPTS=&quot;-Xmx1024m -Dfile.encoding=UTF-8&quot; [dspace]/bin/dspace impo
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -275,8 +275,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -285,6 +283,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -517,8 +517,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -527,6 +525,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -659,8 +659,6 @@ Cert Status: good
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -669,6 +667,8 @@ Cert Status: good
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -443,8 +443,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -453,6 +451,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -944,8 +944,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -954,6 +952,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -783,8 +783,6 @@ DELETE 20
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -793,6 +791,8 @@ DELETE 20
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1452,8 +1452,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -1462,6 +1460,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1039,8 +1039,6 @@ UPDATE 3
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -1049,6 +1047,8 @@ UPDATE 3
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -585,8 +585,6 @@ Fixed 5 occurences of: GENEBANKS
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -595,6 +593,8 @@ Fixed 5 occurences of: GENEBANKS
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -594,8 +594,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -604,6 +602,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -523,8 +523,6 @@ $ psql -h localhost -U postgres dspacetest
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -533,6 +531,8 @@ $ psql -h localhost -U postgres dspacetest
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -517,8 +517,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -527,6 +525,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -569,8 +569,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -579,6 +577,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -442,8 +442,6 @@ $ dspace database migrate ignored
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -452,6 +450,8 @@ $ dspace database migrate ignored
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -748,8 +748,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -758,6 +756,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -656,8 +656,6 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -666,6 +664,8 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -553,8 +553,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -563,6 +561,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -594,8 +594,6 @@ UPDATE 1
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -604,6 +602,8 @@ UPDATE 1
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1264,8 +1264,6 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -1274,6 +1272,8 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1344,8 +1344,6 @@ Please see the DSpace documentation for assistance.
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -1354,6 +1352,8 @@ Please see the DSpace documentation for assistance.
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1208,8 +1208,6 @@ sys 0m2.551s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -1218,6 +1216,8 @@ sys 0m2.551s
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1299,8 +1299,6 @@ UPDATE 14
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -1309,6 +1307,8 @@ UPDATE 14
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -631,8 +631,6 @@ COPY 64871
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -641,6 +639,8 @@ COPY 64871
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -317,8 +317,6 @@ UPDATE 2
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -327,6 +325,8 @@ UPDATE 2
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -554,8 +554,6 @@ issn.validate('1020-3362')
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -564,6 +562,8 @@ issn.validate('1020-3362')
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -573,8 +573,6 @@ sys 2m27.496s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -583,6 +581,8 @@ sys 2m27.496s
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -581,8 +581,6 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -591,6 +589,8 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -385,8 +385,6 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -395,6 +393,8 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -692,8 +692,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -702,6 +700,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -404,8 +404,6 @@ UPDATE 1
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -414,6 +412,8 @@ UPDATE 1
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -604,8 +604,6 @@ COPY 2900
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -614,6 +612,8 @@ COPY 2900
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1275,8 +1275,6 @@ Moving: 21993 into core statistics-2019
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -1285,6 +1283,8 @@ Moving: 21993 into core statistics-2019
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -484,8 +484,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -494,6 +492,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -658,8 +658,6 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -668,6 +666,8 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -477,8 +477,6 @@ Caused by: java.lang.NullPointerException
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -487,6 +485,8 @@ Caused by: java.lang.NullPointerException
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -811,8 +811,6 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -821,6 +819,8 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1142,8 +1142,6 @@ Fixed 4 occurences of: Muloi, D.M.
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -1152,6 +1150,8 @@ Fixed 4 occurences of: Muloi, D.M.
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -798,8 +798,6 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -808,6 +806,8 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -717,8 +717,6 @@ solr_query_params = {
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -727,6 +725,8 @@ solr_query_params = {
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1241,8 +1241,6 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -1251,6 +1249,8 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -731,8 +731,6 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -741,6 +739,8 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -869,8 +869,6 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-2020-12-29?pretty'
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -879,6 +877,8 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-2020-12-29?pretty'
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -688,8 +688,6 @@ java.lang.IllegalArgumentException: Invalid character found in the request targe
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -698,6 +696,8 @@ java.lang.IllegalArgumentException: Invalid character found in the request targe
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -898,8 +898,6 @@ dspace.log.2021-02-28:0
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -908,6 +906,8 @@ dspace.log.2021-02-28:0
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -875,8 +875,6 @@ COPY 3081
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -885,6 +883,8 @@ COPY 3081
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1042,8 +1042,6 @@ $ ./ilri/doi-to-handle.py -i /tmp/dois.txt -o /tmp/handles.csv -db dspace63 -u d
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -1052,6 +1050,8 @@ $ ./ilri/doi-to-handle.py -i /tmp/dois.txt -o /tmp/handles.csv -db dspace63 -u d
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -685,8 +685,6 @@ Please see the DSpace documentation for assistance.
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -695,6 +693,8 @@ Please see the DSpace documentation for assistance.
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -693,8 +693,6 @@ COPY 1710
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -703,6 +701,8 @@ COPY 1710
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -715,8 +715,6 @@ $ cat AS* /tmp/ddos-networks-to-block.txt | sed -e '/^$/d' -e '/^#/d' -e '/^{/d'
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -725,6 +723,8 @@ $ cat AS* /tmp/ddos-networks-to-block.txt | sed -e '/^$/d' -e '/^#/d' -e '/^{/d'
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -18,7 +18,7 @@ I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-08/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-08/" />
<meta property="article:published_time" content="2021-08-01T09:01:07+03:00" /> <meta property="article:published_time" content="2021-08-01T09:01:07+03:00" />
<meta property="article:modified_time" content="2021-09-02T17:06:28+03:00" /> <meta property="article:modified_time" content="2021-08-29T21:07:25+03:00" />
@ -44,7 +44,7 @@ I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
"url": "https://alanorth.github.io/cgspace-notes/2021-08/", "url": "https://alanorth.github.io/cgspace-notes/2021-08/",
"wordCount": "3195", "wordCount": "3195",
"datePublished": "2021-08-01T09:01:07+03:00", "datePublished": "2021-08-01T09:01:07+03:00",
"dateModified": "2021-09-02T17:06:28+03:00", "dateModified": "2021-08-29T21:07:25+03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -478,7 +478,7 @@ sys 3m17.469s
} }
} }
}' }'
$ curl -X POST 'https://cgspace.cgiar.org/explorer/api/search/scroll/DXF1ZXJ5QW5kRmV0Y2gBAAAAAAAASekWMTRwZ3lEMkVRYUtKZjgyMno4dV9CUQ==' $ curl -X POST 'https://cgspace.cgiar.org/explorer/api/search/scroll/DXF1ZXJ5QW5kRmV0Y2gBAAAAAAAASekWMTRwZ3lEMkVRYUtKZjgyMno4dV9CUQ==
</code></pre><ul> </code></pre><ul>
<li>This uses the Elasticsearch scroll ID to page through results <li>This uses the Elasticsearch scroll ID to page through results
<ul> <ul>
@ -606,8 +606,6 @@ $ ./ilri/add-orcid-identifiers-csv.py -i 2021-08-25-add-orcids.csv -db dspace -u
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -616,6 +614,8 @@ $ ./ilri/add-orcid-identifiers-csv.py -i 2021-08-25-add-orcids.csv -db dspace -u
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1,222 +0,0 @@
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<head>
<meta charset="utf-8">
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<meta property="og:title" content="September, 2021" />
<meta property="og:description" content="2021-09-02
Troubleshooting the missing Altmetric scores on AReS
Turns out that I didn&rsquo;t actually fix them last month because the check for content.altmetric still exists, and I can&rsquo;t access the DOIs using _h.source.DOI for some reason
I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!
I will change DOI to tomato in the repository setup and start a re-harvest&hellip; I need to see if this is some kind of reserved word or something&hellip;
I&rsquo;m having problems using the OpenRXV API
The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search query properly&hellip;
" />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-09/" />
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<meta name="twitter:title" content="September, 2021"/>
<meta name="twitter:description" content="2021-09-02
Troubleshooting the missing Altmetric scores on AReS
Turns out that I didn&rsquo;t actually fix them last month because the check for content.altmetric still exists, and I can&rsquo;t access the DOIs using _h.source.DOI for some reason
I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!
I will change DOI to tomato in the repository setup and start a re-harvest&hellip; I need to see if this is some kind of reserved word or something&hellip;
I&rsquo;m having problems using the OpenRXV API
The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search query properly&hellip;
"/>
<meta name="generator" content="Hugo 0.87.0" />
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<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-09/">September, 2021</a></h2>
<p class="blog-post-meta">
<time datetime="2021-09-01T09:14:07+03:00">Wed Sep 01, 2021</time>
in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
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<h2 id="2021-09-02">2021-09-02</h2>
<ul>
<li>Troubleshooting the missing Altmetric scores on AReS
<ul>
<li>Turns out that I didn&rsquo;t actually fix them last month because the check for <code>content.altmetric</code> still exists, and I can&rsquo;t access the DOIs using <code>_h.source.DOI</code> for some reason</li>
<li>I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!</li>
<li>I will change <code>DOI</code> to <code>tomato</code> in the repository setup and start a re-harvest&hellip; I need to see if this is some kind of reserved word or something&hellip;</li>
</ul>
</li>
<li>I&rsquo;m having problems using the OpenRXV API
<ul>
<li>The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search query properly&hellip;</li>
</ul>
</li>
</ul>
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<h4>Recent Posts</h4>
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<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
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<h4>Links</h4>
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
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@ -95,8 +95,6 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -105,6 +103,8 @@
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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@ -84,7 +84,7 @@
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/categories/notes/">Notes</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/categories/notes/">Notes</a></h2>
<p class="blog-post-meta"><time datetime="2021-09-01T09:14:07+03:00">Wed Sep 01, 2021</time> by Alan Orth</p> <p class="blog-post-meta"><time datetime="2021-08-01T09:01:07+03:00">Sun Aug 01, 2021</time> by Alan Orth</p>
</header> </header>
<a href='https://alanorth.github.io/cgspace-notes/categories/notes/'>Read more →</a> <a href='https://alanorth.github.io/cgspace-notes/categories/notes/'>Read more →</a>
@ -108,8 +108,6 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -118,6 +116,8 @@
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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@ -6,11 +6,11 @@
<description>Recent content in Categories on CGSpace Notes</description> <description>Recent content in Categories on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Wed, 01 Sep 2021 09:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" /> <lastBuildDate>Sun, 01 Aug 2021 09:01:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/index.xml" rel="self" type="application/rss+xml" />
<item> <item>
<title>Notes</title> <title>Notes</title>
<link>https://alanorth.github.io/cgspace-notes/categories/notes/</link> <link>https://alanorth.github.io/cgspace-notes/categories/notes/</link>
<pubDate>Wed, 01 Sep 2021 09:14:07 +0300</pubDate> <pubDate>Sun, 01 Aug 2021 09:01:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/categories/notes/</guid> <guid>https://alanorth.github.io/cgspace-notes/categories/notes/</guid>
<description></description> <description></description>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -81,38 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-09/">September, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-09-01T09:14:07+03:00">Wed Sep 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-09-02">2021-09-02</h2>
<ul>
<li>Troubleshooting the missing Altmetric scores on AReS
<ul>
<li>Turns out that I didn&rsquo;t actually fix them last month because the check for <code>content.altmetric</code> still exists, and I can&rsquo;t access the DOIs using <code>_h.source.DOI</code> for some reason</li>
<li>I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!</li>
<li>I will change <code>DOI</code> to <code>tomato</code> in the repository setup and start a re-harvest&hellip; I need to see if this is some kind of reserved word or something&hellip;</li>
</ul>
</li>
<li>I&rsquo;m having problems using the OpenRXV API
<ul>
<li>The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search query properly&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-09/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-08/">August, 2021</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-08/">August, 2021</a></h2>
@ -366,6 +334,33 @@ COPY 20994
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-12-01T11:32:54+02:00">Tue Dec 01, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-12-01">2020-12-01</h2>
<ul>
<li>Atmire responded about the issue with duplicate data in our Solr statistics
<ul>
<li>They noticed that some records in the statistics-2015 core haven&rsquo;t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven&rsquo;t migrated any of the records yet</li>
<li>That&rsquo;s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the <code>cua_version</code> field</li>
<li>I started processing those (about 411,000 records):</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-12/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -390,8 +385,6 @@ COPY 20994
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -400,6 +393,8 @@ COPY 20994
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -6,30 +6,7 @@
<description>Recent content in Notes on CGSpace Notes</description> <description>Recent content in Notes on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Wed, 01 Sep 2021 09:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" /> <lastBuildDate>Sun, 01 Aug 2021 09:01:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>September, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-09/</link>
<pubDate>Wed, 01 Sep 2021 09:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-09/</guid>
<description>&lt;h2 id=&#34;2021-09-02&#34;&gt;2021-09-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Troubleshooting the missing Altmetric scores on AReS
&lt;ul&gt;
&lt;li&gt;Turns out that I didn&amp;rsquo;t actually fix them last month because the check for &lt;code&gt;content.altmetric&lt;/code&gt; still exists, and I can&amp;rsquo;t access the DOIs using &lt;code&gt;_h.source.DOI&lt;/code&gt; for some reason&lt;/li&gt;
&lt;li&gt;I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!&lt;/li&gt;
&lt;li&gt;I will change &lt;code&gt;DOI&lt;/code&gt; to &lt;code&gt;tomato&lt;/code&gt; in the repository setup and start a re-harvest&amp;hellip; I need to see if this is some kind of reserved word or something&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;I&amp;rsquo;m having problems using the OpenRXV API
&lt;ul&gt;
&lt;li&gt;The syntax Moayad showed me last month doesn&amp;rsquo;t seem to honor the search query properly&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item> <item>
<title>August, 2021</title> <title>August, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-08/</link> <link>https://alanorth.github.io/cgspace-notes/2021-08/</link>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -81,33 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-12-01T11:32:54+02:00">Tue Dec 01, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-12-01">2020-12-01</h2>
<ul>
<li>Atmire responded about the issue with duplicate data in our Solr statistics
<ul>
<li>They noticed that some records in the statistics-2015 core haven&rsquo;t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven&rsquo;t migrated any of the records yet</li>
<li>That&rsquo;s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the <code>cua_version</code> field</li>
<li>I started processing those (about 411,000 records):</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-12/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-dspace6-upgrade/">CGSpace DSpace 6 Upgrade</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-dspace6-upgrade/">CGSpace DSpace 6 Upgrade</a></h2>
@ -357,6 +330,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-03-02T12:31:30+02:00">Mon Mar 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-03-02">2020-03-02</h2>
<ul>
<li>Update <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> for DSpace 6+ UUIDs
<ul>
<li>Tag version 1.2.0 on GitHub</li>
</ul>
</li>
<li>Test migrating legacy Solr statistics to UUIDs with the as-of-yet unreleased <a href="https://github.com/DSpace/DSpace/commit/184f2b2153479045fba6239342c63e7f8564b8b6#diff-0350ce2e13b28d5d61252b7a8f50a059">SolrUpgradePre6xStatistics.java</a>
<ul>
<li>You need to download this into the DSpace 6.x source and compile it</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-03/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a>
@ -381,8 +384,6 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -391,6 +392,8 @@
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -81,36 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-03-02T12:31:30+02:00">Mon Mar 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-03-02">2020-03-02</h2>
<ul>
<li>Update <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> for DSpace 6+ UUIDs
<ul>
<li>Tag version 1.2.0 on GitHub</li>
</ul>
</li>
<li>Test migrating legacy Solr statistics to UUIDs with the as-of-yet unreleased <a href="https://github.com/DSpace/DSpace/commit/184f2b2153479045fba6239342c63e7f8564b8b6#diff-0350ce2e13b28d5d61252b7a8f50a059">SolrUpgradePre6xStatistics.java</a>
<ul>
<li>You need to download this into the DSpace 6.x source and compile it</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-03/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-02/">February, 2020</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-02/">February, 2020</a></h2>
@ -394,6 +364,39 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-05-01T07:37:43+03:00">Wed May 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-05-01">2019-05-01</h2>
<ul>
<li>Help CCAFS with regenerating some item thumbnails after they uploaded new PDFs to some items on CGSpace</li>
<li>A user on the dspace-tech mailing list offered some suggestions for troubleshooting the problem with the inability to delete certain items
<ul>
<li>Apparently if the item is in the <code>workflowitem</code> table it is submitted to a workflow</li>
<li>And if it is in the <code>workspaceitem</code> table it is in the pre-submitted state</li>
</ul>
</li>
<li>The item seems to be in a pre-submitted state, so I tried to delete it from there:</li>
</ul>
<pre><code>dspace=# DELETE FROM workspaceitem WHERE item_id=74648;
DELETE 1
</code></pre><ul>
<li>But after this I tried to delete the item from the XMLUI and it is <em>still</em> present&hellip;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/2/" rel="prev" role="button">Previous page</a>
@ -418,8 +421,6 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -428,6 +429,8 @@
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -81,39 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-05-01T07:37:43+03:00">Wed May 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-05-01">2019-05-01</h2>
<ul>
<li>Help CCAFS with regenerating some item thumbnails after they uploaded new PDFs to some items on CGSpace</li>
<li>A user on the dspace-tech mailing list offered some suggestions for troubleshooting the problem with the inability to delete certain items
<ul>
<li>Apparently if the item is in the <code>workflowitem</code> table it is submitted to a workflow</li>
<li>And if it is in the <code>workspaceitem</code> table it is in the pre-submitted state</li>
</ul>
</li>
<li>The item seems to be in a pre-submitted state, so I tried to delete it from there:</li>
</ul>
<pre><code>dspace=# DELETE FROM workspaceitem WHERE item_id=74648;
DELETE 1
</code></pre><ul>
<li>But after this I tried to delete the item from the XMLUI and it is <em>still</em> present&hellip;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-04/">April, 2019</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-04/">April, 2019</a></h2>
@ -397,6 +364,33 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-07-01">2018-07-01</h2>
<ul>
<li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
</ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre><ul>
<li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/3/" rel="prev" role="button">Previous page</a>
@ -421,8 +415,6 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -431,6 +423,8 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -81,33 +81,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-07-01">2018-07-01</h2>
<ul>
<li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
</ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre><ul>
<li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
@ -407,11 +380,31 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/4/" rel="prev" role="button">Previous page</a>
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<a class="btn btn-outline-primary disabled" href="#" role="button" aria-disabled="true">Next page</a>
</nav> </nav>
@ -431,8 +424,6 @@ COPY 54701
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -441,6 +432,8 @@ COPY 54701
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -1,178 +0,0 @@
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<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<div class="col-sm-8 blog-main">
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
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<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
<li><a href="/cgspace-notes/2021-06/">June, 2021</a></li>
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
</ol>
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<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
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View File

@ -282,8 +282,6 @@ dspace=# select setval('handle_seq',86873);
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -292,6 +290,8 @@ dspace=# select setval('handle_seq',86873);
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -462,8 +462,6 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -472,6 +470,8 @@
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -471,8 +471,6 @@ $ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2018
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -481,6 +479,8 @@ $ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2018
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,38 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-09/">September, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-09-01T09:14:07+03:00">Wed Sep 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-09-02">2021-09-02</h2>
<ul>
<li>Troubleshooting the missing Altmetric scores on AReS
<ul>
<li>Turns out that I didn&rsquo;t actually fix them last month because the check for <code>content.altmetric</code> still exists, and I can&rsquo;t access the DOIs using <code>_h.source.DOI</code> for some reason</li>
<li>I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!</li>
<li>I will change <code>DOI</code> to <code>tomato</code> in the repository setup and start a re-harvest&hellip; I need to see if this is some kind of reserved word or something&hellip;</li>
</ul>
</li>
<li>I&rsquo;m having problems using the OpenRXV API
<ul>
<li>The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search query properly&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-09/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-08/">August, 2021</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-08/">August, 2021</a></h2>
@ -381,6 +349,33 @@ COPY 20994
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-12-01T11:32:54+02:00">Tue Dec 01, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-12-01">2020-12-01</h2>
<ul>
<li>Atmire responded about the issue with duplicate data in our Solr statistics
<ul>
<li>They noticed that some records in the statistics-2015 core haven&rsquo;t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven&rsquo;t migrated any of the records yet</li>
<li>That&rsquo;s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the <code>cua_version</code> field</li>
<li>I started processing those (about 411,000 records):</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-12/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -405,8 +400,6 @@ COPY 20994
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -415,6 +408,8 @@ COPY 20994
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -6,30 +6,7 @@
<description>Recent content on CGSpace Notes</description> <description>Recent content on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Wed, 01 Sep 2021 09:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" /> <lastBuildDate>Sun, 01 Aug 2021 09:01:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>September, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-09/</link>
<pubDate>Wed, 01 Sep 2021 09:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-09/</guid>
<description>&lt;h2 id=&#34;2021-09-02&#34;&gt;2021-09-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Troubleshooting the missing Altmetric scores on AReS
&lt;ul&gt;
&lt;li&gt;Turns out that I didn&amp;rsquo;t actually fix them last month because the check for &lt;code&gt;content.altmetric&lt;/code&gt; still exists, and I can&amp;rsquo;t access the DOIs using &lt;code&gt;_h.source.DOI&lt;/code&gt; for some reason&lt;/li&gt;
&lt;li&gt;I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!&lt;/li&gt;
&lt;li&gt;I will change &lt;code&gt;DOI&lt;/code&gt; to &lt;code&gt;tomato&lt;/code&gt; in the repository setup and start a re-harvest&amp;hellip; I need to see if this is some kind of reserved word or something&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;I&amp;rsquo;m having problems using the OpenRXV API
&lt;ul&gt;
&lt;li&gt;The syntax Moayad showed me last month doesn&amp;rsquo;t seem to honor the search query properly&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item> <item>
<title>August, 2021</title> <title>August, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-08/</link> <link>https://alanorth.github.io/cgspace-notes/2021-08/</link>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,33 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-12-01T11:32:54+02:00">Tue Dec 01, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-12-01">2020-12-01</h2>
<ul>
<li>Atmire responded about the issue with duplicate data in our Solr statistics
<ul>
<li>They noticed that some records in the statistics-2015 core haven&rsquo;t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven&rsquo;t migrated any of the records yet</li>
<li>That&rsquo;s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the <code>cua_version</code> field</li>
<li>I started processing those (about 411,000 records):</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-12/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-dspace6-upgrade/">CGSpace DSpace 6 Upgrade</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-dspace6-upgrade/">CGSpace DSpace 6 Upgrade</a></h2>
@ -372,6 +345,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-03-02T12:31:30+02:00">Mon Mar 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-03-02">2020-03-02</h2>
<ul>
<li>Update <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> for DSpace 6+ UUIDs
<ul>
<li>Tag version 1.2.0 on GitHub</li>
</ul>
</li>
<li>Test migrating legacy Solr statistics to UUIDs with the as-of-yet unreleased <a href="https://github.com/DSpace/DSpace/commit/184f2b2153479045fba6239342c63e7f8564b8b6#diff-0350ce2e13b28d5d61252b7a8f50a059">SolrUpgradePre6xStatistics.java</a>
<ul>
<li>You need to download this into the DSpace 6.x source and compile it</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-03/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
@ -396,8 +399,6 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -406,6 +407,8 @@
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,36 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-03-02T12:31:30+02:00">Mon Mar 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-03-02">2020-03-02</h2>
<ul>
<li>Update <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> for DSpace 6+ UUIDs
<ul>
<li>Tag version 1.2.0 on GitHub</li>
</ul>
</li>
<li>Test migrating legacy Solr statistics to UUIDs with the as-of-yet unreleased <a href="https://github.com/DSpace/DSpace/commit/184f2b2153479045fba6239342c63e7f8564b8b6#diff-0350ce2e13b28d5d61252b7a8f50a059">SolrUpgradePre6xStatistics.java</a>
<ul>
<li>You need to download this into the DSpace 6.x source and compile it</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-03/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-02/">February, 2020</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-02/">February, 2020</a></h2>
@ -409,6 +379,39 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-05-01T07:37:43+03:00">Wed May 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-05-01">2019-05-01</h2>
<ul>
<li>Help CCAFS with regenerating some item thumbnails after they uploaded new PDFs to some items on CGSpace</li>
<li>A user on the dspace-tech mailing list offered some suggestions for troubleshooting the problem with the inability to delete certain items
<ul>
<li>Apparently if the item is in the <code>workflowitem</code> table it is submitted to a workflow</li>
<li>And if it is in the <code>workspaceitem</code> table it is in the pre-submitted state</li>
</ul>
</li>
<li>The item seems to be in a pre-submitted state, so I tried to delete it from there:</li>
</ul>
<pre><code>dspace=# DELETE FROM workspaceitem WHERE item_id=74648;
DELETE 1
</code></pre><ul>
<li>But after this I tried to delete the item from the XMLUI and it is <em>still</em> present&hellip;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
@ -433,8 +436,6 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -443,6 +444,8 @@
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,39 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-05-01T07:37:43+03:00">Wed May 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-05-01">2019-05-01</h2>
<ul>
<li>Help CCAFS with regenerating some item thumbnails after they uploaded new PDFs to some items on CGSpace</li>
<li>A user on the dspace-tech mailing list offered some suggestions for troubleshooting the problem with the inability to delete certain items
<ul>
<li>Apparently if the item is in the <code>workflowitem</code> table it is submitted to a workflow</li>
<li>And if it is in the <code>workspaceitem</code> table it is in the pre-submitted state</li>
</ul>
</li>
<li>The item seems to be in a pre-submitted state, so I tried to delete it from there:</li>
</ul>
<pre><code>dspace=# DELETE FROM workspaceitem WHERE item_id=74648;
DELETE 1
</code></pre><ul>
<li>But after this I tried to delete the item from the XMLUI and it is <em>still</em> present&hellip;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-04/">April, 2019</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-04/">April, 2019</a></h2>
@ -412,6 +379,33 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-07-01">2018-07-01</h2>
<ul>
<li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
</ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre><ul>
<li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
@ -436,8 +430,6 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -446,6 +438,8 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,33 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-07-01">2018-07-01</h2>
<ul>
<li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
</ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre><ul>
<li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
@ -422,6 +395,26 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/4/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/4/" rel="prev" role="button">Previous page</a>
@ -446,8 +439,6 @@ COPY 54701
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -456,6 +447,8 @@ COPY 54701
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,26 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
@ -364,6 +344,38 @@ DELETE 1
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-12-02">2016-12-02</h2>
<ul>
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
</ul>
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&quot;dc.title&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&quot;THUMBNAIL&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&quot;-1&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
</code></pre><ul>
<li>I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade</li>
<li>I&rsquo;ve raised a ticket with Atmire to ask</li>
<li>Another worrying error from dspace.log is:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/5/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/5/" rel="prev" role="button">Previous page</a>
@ -388,8 +400,6 @@ DELETE 1
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -398,6 +408,8 @@ DELETE 1
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,38 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-12-02">2016-12-02</h2>
<ul>
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
</ul>
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&quot;dc.title&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&quot;THUMBNAIL&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&quot;-1&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
</code></pre><ul>
<li>I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade</li>
<li>I&rsquo;ve raised a ticket with Atmire to ask</li>
<li>Another worrying error from dspace.log is:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
@ -366,6 +334,34 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-02-05">2016-02-05</h2>
<ul>
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
</ul>
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list"></p>
<ul>
<li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li>
<li>Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/6/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/page/6/" rel="prev" role="button">Previous page</a>
@ -390,8 +386,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -400,6 +394,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,34 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-02-05">2016-02-05</h2>
<ul>
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
</ul>
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list"></p>
<ul>
<li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li>
<li>Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
@ -223,8 +195,6 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -233,6 +203,8 @@
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,38 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-09/">September, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-09-01T09:14:07+03:00">Wed Sep 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-09-02">2021-09-02</h2>
<ul>
<li>Troubleshooting the missing Altmetric scores on AReS
<ul>
<li>Turns out that I didn&rsquo;t actually fix them last month because the check for <code>content.altmetric</code> still exists, and I can&rsquo;t access the DOIs using <code>_h.source.DOI</code> for some reason</li>
<li>I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!</li>
<li>I will change <code>DOI</code> to <code>tomato</code> in the repository setup and start a re-harvest&hellip; I need to see if this is some kind of reserved word or something&hellip;</li>
</ul>
</li>
<li>I&rsquo;m having problems using the OpenRXV API
<ul>
<li>The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search query properly&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-09/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-08/">August, 2021</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-08/">August, 2021</a></h2>
@ -381,6 +349,33 @@ COPY 20994
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-12-01T11:32:54+02:00">Tue Dec 01, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-12-01">2020-12-01</h2>
<ul>
<li>Atmire responded about the issue with duplicate data in our Solr statistics
<ul>
<li>They noticed that some records in the statistics-2015 core haven&rsquo;t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven&rsquo;t migrated any of the records yet</li>
<li>That&rsquo;s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the <code>cua_version</code> field</li>
<li>I started processing those (about 411,000 records):</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-12/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
@ -405,8 +400,6 @@ COPY 20994
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -415,6 +408,8 @@ COPY 20994
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -6,30 +6,7 @@
<description>Recent content in Posts on CGSpace Notes</description> <description>Recent content in Posts on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator> <generator>Hugo -- gohugo.io</generator>
<language>en-us</language> <language>en-us</language>
<lastBuildDate>Wed, 01 Sep 2021 09:14:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" /> <lastBuildDate>Sun, 01 Aug 2021 09:01:07 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>September, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-09/</link>
<pubDate>Wed, 01 Sep 2021 09:14:07 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2021-09/</guid>
<description>&lt;h2 id=&#34;2021-09-02&#34;&gt;2021-09-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Troubleshooting the missing Altmetric scores on AReS
&lt;ul&gt;
&lt;li&gt;Turns out that I didn&amp;rsquo;t actually fix them last month because the check for &lt;code&gt;content.altmetric&lt;/code&gt; still exists, and I can&amp;rsquo;t access the DOIs using &lt;code&gt;_h.source.DOI&lt;/code&gt; for some reason&lt;/li&gt;
&lt;li&gt;I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!&lt;/li&gt;
&lt;li&gt;I will change &lt;code&gt;DOI&lt;/code&gt; to &lt;code&gt;tomato&lt;/code&gt; in the repository setup and start a re-harvest&amp;hellip; I need to see if this is some kind of reserved word or something&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;I&amp;rsquo;m having problems using the OpenRXV API
&lt;ul&gt;
&lt;li&gt;The syntax Moayad showed me last month doesn&amp;rsquo;t seem to honor the search query properly&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item> <item>
<title>August, 2021</title> <title>August, 2021</title>
<link>https://alanorth.github.io/cgspace-notes/2021-08/</link> <link>https://alanorth.github.io/cgspace-notes/2021-08/</link>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,33 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-12-01T11:32:54+02:00">Tue Dec 01, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-12-01">2020-12-01</h2>
<ul>
<li>Atmire responded about the issue with duplicate data in our Solr statistics
<ul>
<li>They noticed that some records in the statistics-2015 core haven&rsquo;t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven&rsquo;t migrated any of the records yet</li>
<li>That&rsquo;s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the <code>cua_version</code> field</li>
<li>I started processing those (about 411,000 records):</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-12/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-dspace6-upgrade/">CGSpace DSpace 6 Upgrade</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-dspace6-upgrade/">CGSpace DSpace 6 Upgrade</a></h2>
@ -372,6 +345,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-03-02T12:31:30+02:00">Mon Mar 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-03-02">2020-03-02</h2>
<ul>
<li>Update <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> for DSpace 6+ UUIDs
<ul>
<li>Tag version 1.2.0 on GitHub</li>
</ul>
</li>
<li>Test migrating legacy Solr statistics to UUIDs with the as-of-yet unreleased <a href="https://github.com/DSpace/DSpace/commit/184f2b2153479045fba6239342c63e7f8564b8b6#diff-0350ce2e13b28d5d61252b7a8f50a059">SolrUpgradePre6xStatistics.java</a>
<ul>
<li>You need to download this into the DSpace 6.x source and compile it</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-03/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -396,8 +399,6 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -406,6 +407,8 @@
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,36 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-03-02T12:31:30+02:00">Mon Mar 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-03-02">2020-03-02</h2>
<ul>
<li>Update <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> for DSpace 6+ UUIDs
<ul>
<li>Tag version 1.2.0 on GitHub</li>
</ul>
</li>
<li>Test migrating legacy Solr statistics to UUIDs with the as-of-yet unreleased <a href="https://github.com/DSpace/DSpace/commit/184f2b2153479045fba6239342c63e7f8564b8b6#diff-0350ce2e13b28d5d61252b7a8f50a059">SolrUpgradePre6xStatistics.java</a>
<ul>
<li>You need to download this into the DSpace 6.x source and compile it</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-03/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-02/">February, 2020</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-02/">February, 2020</a></h2>
@ -409,6 +379,39 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-05-01T07:37:43+03:00">Wed May 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-05-01">2019-05-01</h2>
<ul>
<li>Help CCAFS with regenerating some item thumbnails after they uploaded new PDFs to some items on CGSpace</li>
<li>A user on the dspace-tech mailing list offered some suggestions for troubleshooting the problem with the inability to delete certain items
<ul>
<li>Apparently if the item is in the <code>workflowitem</code> table it is submitted to a workflow</li>
<li>And if it is in the <code>workspaceitem</code> table it is in the pre-submitted state</li>
</ul>
</li>
<li>The item seems to be in a pre-submitted state, so I tried to delete it from there:</li>
</ul>
<pre><code>dspace=# DELETE FROM workspaceitem WHERE item_id=74648;
DELETE 1
</code></pre><ul>
<li>But after this I tried to delete the item from the XMLUI and it is <em>still</em> present&hellip;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -433,8 +436,6 @@
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -443,6 +444,8 @@
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2021-09-02T17:06:28+03:00" /> <meta property="og:updated_time" content="2021-08-29T21:07:25+03:00" />
@ -31,7 +31,7 @@
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
}, },
"dateModified": "2021-09-01T09:14:07+03:00", "dateModified": "2021-08-01T09:01:07+03:00",
"keywords": "notes, migration, notes", "keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." "description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
} }
@ -96,39 +96,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-05-01T07:37:43+03:00">Wed May 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-05-01">2019-05-01</h2>
<ul>
<li>Help CCAFS with regenerating some item thumbnails after they uploaded new PDFs to some items on CGSpace</li>
<li>A user on the dspace-tech mailing list offered some suggestions for troubleshooting the problem with the inability to delete certain items
<ul>
<li>Apparently if the item is in the <code>workflowitem</code> table it is submitted to a workflow</li>
<li>And if it is in the <code>workspaceitem</code> table it is in the pre-submitted state</li>
</ul>
</li>
<li>The item seems to be in a pre-submitted state, so I tried to delete it from there:</li>
</ul>
<pre><code>dspace=# DELETE FROM workspaceitem WHERE item_id=74648;
DELETE 1
</code></pre><ul>
<li>But after this I tried to delete the item from the XMLUI and it is <em>still</em> present&hellip;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
</article>
<article class="blog-post"> <article class="blog-post">
<header> <header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-04/">April, 2019</a></h2> <h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-04/">April, 2019</a></h2>
@ -412,6 +379,33 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/cgspace-notes/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-07-01">2018-07-01</h2>
<ul>
<li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
</ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre><ul>
<li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article>
<nav class="blog-pagination"> <nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a> <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
@ -436,8 +430,6 @@ sys 0m1.979s
<ol class="list-unstyled"> <ol class="list-unstyled">
<li><a href="/cgspace-notes/2021-09/">September, 2021</a></li>
<li><a href="/cgspace-notes/2021-08/">August, 2021</a></li> <li><a href="/cgspace-notes/2021-08/">August, 2021</a></li>
<li><a href="/cgspace-notes/2021-07/">July, 2021</a></li> <li><a href="/cgspace-notes/2021-07/">July, 2021</a></li>
@ -446,6 +438,8 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2021-05/">May, 2021</a></li> <li><a href="/cgspace-notes/2021-05/">May, 2021</a></li>
<li><a href="/cgspace-notes/2021-04/">April, 2021</a></li>
</ol> </ol>
</section> </section>

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