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Update notes
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@ -30,3 +30,34 @@ v_oai.value 0
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- Bram from Atmire responded about the high load caused by the Solr updater script and said it will be fixed with the updates to DSpace 5.8 compatibility: https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=566
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- We will close that ticket for now and wait for the 5.8 stuff: https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560
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- I finally took a look at the second round of cleanups Peter had sent me for author affiliations in mid January
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- After trimming whitespace and quickly scanning for encoding errors I applied them on CGSpace:
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```
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$ ./delete-metadata-values.py -i /tmp/2018-02-03-Affiliations-12-deletions.csv -f cg.contributor.affiliation -m 211 -d dspace -u dspace -p 'fuuu'
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$ ./fix-metadata-values.py -i /tmp/2018-02-03-Affiliations-1116-corrections.csv -f cg.contributor.affiliation -t correct -m 211 -d dspace -u dspace -p 'fuuu'
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```
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- Then I started a full Discovery reindex:
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```
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$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b
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```
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- Generate a new list of affiliations for Peter to sort through:
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```
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dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'affiliation') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/affiliations.csv with csv;
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COPY 3723
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```
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- Oh, and it looks like we processed over 3.1 million requests in January, up from 2.9 million in [December]({{< relref "2017-12.md" >}}):
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```
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# time zcat --force /var/log/nginx/* | grep -cE "[0-9]{1,2}/Jan/2018"
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3126109
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real 0m23.839s
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user 0m27.225s
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sys 0m1.905s
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```
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@ -23,7 +23,7 @@ I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu’s munin-pl
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<meta property="article:published_time" content="2018-02-01T16:28:54+02:00"/>
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<meta property="article:modified_time" content="2018-02-01T19:04:07+02:00"/>
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<meta property="article:modified_time" content="2018-02-03T09:44:31+02:00"/>
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@ -57,9 +57,9 @@ I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu’s munin-pl
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"@type": "BlogPosting",
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"headline": "February, 2018",
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"url": "https://alanorth.github.io/cgspace-notes/2018-02/",
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"wordCount": "149",
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"wordCount": "322",
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"datePublished": "2018-02-01T16:28:54+02:00",
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"dateModified": "2018-02-01T19:04:07+02:00",
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"dateModified": "2018-02-03T09:44:31+02:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -156,8 +156,41 @@ v_oai.value 0
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<ul>
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<li>Bram from Atmire responded about the high load caused by the Solr updater script and said it will be fixed with the updates to DSpace 5.8 compatibility: <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=566">https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=566</a></li>
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<li>We will close that ticket for now and wait for the 5.8 stuff: <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560">https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560</a></li>
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<li>I finally took a look at the second round of cleanups Peter had sent me for author affiliations in mid January</li>
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<li>After trimming whitespace and quickly scanning for encoding errors I applied them on CGSpace:</li>
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</ul>
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<pre><code>$ ./delete-metadata-values.py -i /tmp/2018-02-03-Affiliations-12-deletions.csv -f cg.contributor.affiliation -m 211 -d dspace -u dspace -p 'fuuu'
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$ ./fix-metadata-values.py -i /tmp/2018-02-03-Affiliations-1116-corrections.csv -f cg.contributor.affiliation -t correct -m 211 -d dspace -u dspace -p 'fuuu'
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</code></pre>
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<ul>
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<li>Then I started a full Discovery reindex:</li>
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</ul>
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<pre><code>$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b
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</code></pre>
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<ul>
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<li>Generate a new list of affiliations for Peter to sort through:</li>
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</ul>
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<pre><code>dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'affiliation') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/affiliations.csv with csv;
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COPY 3723
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</code></pre>
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<ul>
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<li>Oh, and it looks like we processed over 3.1 million requests in January, up from 2.9 million in <a href="/cgspace-notes/2017-12/">December</a>:</li>
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</ul>
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<pre><code># time zcat --force /var/log/nginx/* | grep -cE "[0-9]{1,2}/Jan/2018"
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3126109
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real 0m23.839s
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user 0m27.225s
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sys 0m1.905s
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</code></pre>
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@ -32,7 +32,7 @@ Disallow: /cgspace-notes/2015-12/
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Disallow: /cgspace-notes/2015-11/
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Disallow: /cgspace-notes/
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Disallow: /cgspace-notes/categories/
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Disallow: /cgspace-notes/tags/notes/
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Disallow: /cgspace-notes/categories/notes/
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Disallow: /cgspace-notes/tags/notes/
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Disallow: /cgspace-notes/post/
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Disallow: /cgspace-notes/tags/
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@ -4,7 +4,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/2018-02/</loc>
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<lastmod>2018-02-01T19:04:07+02:00</lastmod>
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<lastmod>2018-02-03T09:44:31+02:00</lastmod>
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</url>
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<url>
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@ -149,7 +149,7 @@
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/</loc>
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<lastmod>2018-02-01T19:04:07+02:00</lastmod>
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<lastmod>2018-02-03T09:44:31+02:00</lastmod>
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<priority>0</priority>
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</url>
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@ -158,27 +158,27 @@
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
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<lastmod>2018-02-01T19:04:07+02:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
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<lastmod>2017-09-28T12:00:49+03:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
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<lastmod>2018-02-03T09:44:31+02:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/post/</loc>
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<lastmod>2018-02-01T19:04:07+02:00</lastmod>
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<lastmod>2018-02-03T09:44:31+02:00</lastmod>
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<priority>0</priority>
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</url>
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<url>
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<loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
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<lastmod>2018-02-01T19:04:07+02:00</lastmod>
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<lastmod>2018-02-03T09:44:31+02:00</lastmod>
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<priority>0</priority>
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</url>
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