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Alan Orth 2018-04-24 16:38:05 +03:00
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11
content/posts/2018-04.md
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@ -481,3 +481,14 @@ org.apache.tomcat.jdbc.pool.PoolExhaustedException: [localhost-startStop-2] Time
```
- Very suspect!
## 2018-04-24
- Testing my Ansible playbooks with a clean and updated installation of Ubuntu 18.04 and I fixed some issues that I hadn't run into a few weeks ago
- There seems to be a new issue with Java dependencies, though
- The `default-jre` package is going to be Java 10 on Ubuntu 18.04, but I want to use `openjdk-8-jre-headless` (well, the JDK actually, but it uses this JRE)
- Tomcat and Ant are fine with Java 8, but the `maven` package wants to pull in Java 10 for some reason
- Looking closer, I see that `maven` depends on `java7-runtime-headless`, which is indeed provided by `openjdk-8-jre-headless`
- So it must be one of Maven's dependencies...
- I will watch it for a few days because it could be an issue that will be resolved before Ubuntu 18.04's release
- Otherwise I will post a bug to the ubuntu-release mailing list

4
docs/2015-11/index.html
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@ -53,7 +53,7 @@ $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspac
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -63,7 +63,7 @@ $ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspac
"@type": "BlogPosting",
"headline": "November, 2015",
"url": "https://alanorth.github.io/cgspace-notes/2015-11/",
"wordCount": "798",
"wordCount": "0",
"datePublished": "2015-11-23T17:00:57&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2015-12/index.html
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@ -55,7 +55,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -65,7 +65,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
"@type": "BlogPosting",
"headline": "December, 2015",
"url": "https://alanorth.github.io/cgspace-notes/2015-12/",
"wordCount": "753",
"wordCount": "0",
"datePublished": "2015-12-02T13:18:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-01/index.html
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@ -45,7 +45,7 @@ Update GitHub wiki for documentation of maintenance tasks.
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -55,7 +55,7 @@ Update GitHub wiki for documentation of maintenance tasks.
"@type": "BlogPosting",
"headline": "January, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-01/",
"wordCount": "466",
"wordCount": "0",
"datePublished": "2016-01-13T13:18:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-02/index.html
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@ -59,7 +59,7 @@ Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&r
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -69,7 +69,7 @@ Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&r
"@type": "BlogPosting",
"headline": "February, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-02/",
"wordCount": "1657",
"wordCount": "0",
"datePublished": "2016-02-05T13:18:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-03/index.html
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@ -45,7 +45,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -55,7 +55,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
"@type": "BlogPosting",
"headline": "March, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-03/",
"wordCount": "1581",
"wordCount": "0",
"datePublished": "2016-03-02T16:50:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-04/index.html
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@ -49,7 +49,7 @@ Also, I noticed the checker log has some errors we should pay attention to:
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -59,7 +59,7 @@ Also, I noticed the checker log has some errors we should pay attention to:
"@type": "BlogPosting",
"headline": "April, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-04/",
"wordCount": "2006",
"wordCount": "0",
"datePublished": "2016-04-04T11:06:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-05/index.html
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@ -53,7 +53,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -63,7 +63,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
"@type": "BlogPosting",
"headline": "May, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-05/",
"wordCount": "1349",
"wordCount": "0",
"datePublished": "2016-05-01T23:06:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-06/index.html
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@ -51,7 +51,7 @@ Working on second phase of metadata migration, looks like this will work for mov
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -61,7 +61,7 @@ Working on second phase of metadata migration, looks like this will work for mov
"@type": "BlogPosting",
"headline": "June, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-06/",
"wordCount": "1549",
"wordCount": "0",
"datePublished": "2016-06-01T10:53:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-07/index.html
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@ -67,7 +67,7 @@ In this case the select query was showing 95 results before the update
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -77,7 +77,7 @@ In this case the select query was showing 95 results before the update
"@type": "BlogPosting",
"headline": "July, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-07/",
"wordCount": "866",
"wordCount": "0",
"datePublished": "2016-07-01T10:53:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-08/index.html
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@ -61,7 +61,7 @@ $ git rebase -i dspace-5.5
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -71,7 +71,7 @@ $ git rebase -i dspace-5.5
"@type": "BlogPosting",
"headline": "August, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-08/",
"wordCount": "1514",
"wordCount": "0",
"datePublished": "2016-08-01T15:53:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-09/index.html
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@ -53,7 +53,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=or
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -63,7 +63,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=or
"@type": "BlogPosting",
"headline": "September, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-09/",
"wordCount": "3298",
"wordCount": "0",
"datePublished": "2016-09-01T15:53:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-10/index.html
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@ -61,7 +61,7 @@ I exported a random item&rsquo;s metadata as CSV, deleted all columns except id
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -71,7 +71,7 @@ I exported a random item&rsquo;s metadata as CSV, deleted all columns except id
"@type": "BlogPosting",
"headline": "October, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-10/",
"wordCount": "1828",
"wordCount": "0",
"datePublished": "2016-10-03T15:53:00&#43;03:00",
"dateModified": "2018-04-04T16:25:57&#43;03:00",
"author": {

4
docs/2016-11/index.html
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@ -45,7 +45,7 @@ Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -55,7 +55,7 @@ Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module
"@type": "BlogPosting",
"headline": "November, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-11/",
"wordCount": "2825",
"wordCount": "0",
"datePublished": "2016-11-01T09:21:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2016-12/index.html
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@ -69,7 +69,7 @@ Another worrying error from dspace.log is:
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -79,7 +79,7 @@ Another worrying error from dspace.log is:
"@type": "BlogPosting",
"headline": "December, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-12/",
"wordCount": "4078",
"wordCount": "0",
"datePublished": "2016-12-02T10:43:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2017-01/index.html
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@ -45,7 +45,7 @@ I asked on the dspace-tech mailing list because it seems to be broken, and actua
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -55,7 +55,7 @@ I asked on the dspace-tech mailing list because it seems to be broken, and actua
"@type": "BlogPosting",
"headline": "January, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-01/",
"wordCount": "1594",
"wordCount": "0",
"datePublished": "2017-01-02T10:43:00&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2017-02/index.html
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@ -73,7 +73,7 @@ Looks like we&rsquo;ll be using cg.identifier.ccafsprojectpii as the field name
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -83,7 +83,7 @@ Looks like we&rsquo;ll be using cg.identifier.ccafsprojectpii as the field name
"@type": "BlogPosting",
"headline": "February, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-02/",
"wordCount": "2028",
"wordCount": "0",
"datePublished": "2017-02-07T07:04:52-08:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2017-03/index.html
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@ -77,7 +77,7 @@ $ identify ~/Desktop/alc_contrastes_desafios.jpg
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -87,7 +87,7 @@ $ identify ~/Desktop/alc_contrastes_desafios.jpg
"@type": "BlogPosting",
"headline": "March, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-03/",
"wordCount": "1538",
"wordCount": "0",
"datePublished": "2017-03-01T17:08:52&#43;02:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2017-04/index.html
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@ -63,7 +63,7 @@ $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Th
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -73,7 +73,7 @@ $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Th
"@type": "BlogPosting",
"headline": "April, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-04/",
"wordCount": "2917",
"wordCount": "0",
"datePublished": "2017-04-02T17:08:52&#43;02:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

2
docs/2017-05/index.html
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@ -29,7 +29,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="May, 2017"/>
<meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />

2
docs/2017-06/index.html
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@ -29,7 +29,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="June, 2017"/>
<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />

4
docs/2017-07/index.html
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@ -57,7 +57,7 @@ We can use PostgreSQL&rsquo;s extended output format (-x) plus sed to format the
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -67,7 +67,7 @@ We can use PostgreSQL&rsquo;s extended output format (-x) plus sed to format the
"@type": "BlogPosting",
"headline": "July, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-07/",
"wordCount": "1151",
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"datePublished": "2017-07-01T18:03:52&#43;03:00",
"dateModified": "2018-03-09T22:10:33&#43;02:00",
"author": {

4
docs/2017-08/index.html
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@ -77,7 +77,7 @@ Then I cleaned up the author authorities and HTML characters in OpenRefine and s
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -87,7 +87,7 @@ Then I cleaned up the author authorities and HTML characters in OpenRefine and s
"@type": "BlogPosting",
"headline": "August, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-08/",
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4
docs/2017-09/index.html
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@ -53,7 +53,7 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne&rsquo;s user account
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -63,7 +63,7 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne&rsquo;s user account
"@type": "BlogPosting",
"headline": "September, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-09/",
"wordCount": "4199",
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4
docs/2017-10/index.html
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@ -57,7 +57,7 @@ Add Katherine Lutz to the groups for content submission and edit steps of the CG
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -67,7 +67,7 @@ Add Katherine Lutz to the groups for content submission and edit steps of the CG
"@type": "BlogPosting",
"headline": "October, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-10/",
"wordCount": "2613",
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4
docs/2017-11/index.html
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@ -77,7 +77,7 @@ COPY 54701
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -87,7 +87,7 @@ COPY 54701
"@type": "BlogPosting",
"headline": "November, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-11/",
"wordCount": "5428",
"wordCount": "0",
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4
docs/2017-12/index.html
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@ -47,7 +47,7 @@ The list of connections to XMLUI and REST API for today:
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -57,7 +57,7 @@ The list of connections to XMLUI and REST API for today:
"@type": "BlogPosting",
"headline": "December, 2017",
"url": "https://alanorth.github.io/cgspace-notes/2017-12/",
"wordCount": "4088",
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4
docs/2018-01/index.html
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@ -185,7 +185,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -195,7 +195,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
"@type": "BlogPosting",
"headline": "January, 2018",
"url": "https://alanorth.github.io/cgspace-notes/2018-01/",
"wordCount": "7940",
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"datePublished": "2018-01-02T08:35:54-08:00",
"dateModified": "2018-03-28T09:48:08&#43;03:00",
"author": {

4
docs/2018-02/index.html
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@ -47,7 +47,7 @@ I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu&rsquo;s munin-pl
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -57,7 +57,7 @@ I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu&rsquo;s munin-pl
"@type": "BlogPosting",
"headline": "February, 2018",
"url": "https://alanorth.github.io/cgspace-notes/2018-02/",
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4
docs/2018-03/index.html
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@ -41,7 +41,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
"/>
<meta name="generator" content="Hugo 0.39" />
<meta name="generator" content="Hugo 0.40" />
@ -51,7 +51,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
"@type": "BlogPosting",
"headline": "March, 2018",
"url": "https://alanorth.github.io/cgspace-notes/2018-03/",
"wordCount": "2960",
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"datePublished": "2018-03-02T16:07:54&#43;02:00",
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"author": {

17
docs/2018-04/index.html
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@ -43,7 +43,7 @@ Catalina logs at least show some memory errors yesterday:
"/>
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<meta name="generator" content="Hugo 0.40" />
@ -53,7 +53,7 @@ Catalina logs at least show some memory errors yesterday:
"@type": "BlogPosting",
"headline": "April, 2018",
"url": "https://alanorth.github.io/cgspace-notes/2018-04/",
"wordCount": "2549",
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"datePublished": "2018-04-01T16:13:54&#43;02:00",
"dateModified": "2018-04-20T23:24:48&#43;04:00",
"author": {
@ -658,6 +658,19 @@ org.apache.tomcat.jdbc.pool.PoolExhaustedException: [localhost-startStop-2] Time
<li>Very suspect!</li>
</ul>
<h2 id="2018-04-24">2018-04-24</h2>
<ul>
<li>Testing my Ansible playbooks with a clean and updated installation of Ubuntu 18.04 and I fixed some issues that I hadn&rsquo;t run into a few weeks ago</li>
<li>There seems to be a new issue with Java dependencies, though</li>
<li>The <code>default-jre</code> package is going to be Java 10 on Ubuntu 18.04, but I want to use <code>openjdk-8-jre-headless</code> (well, the JDK actually, but it uses this JRE)</li>
<li>Tomcat and Ant are fine with Java 8, but the <code>maven</code> package wants to pull in Java 10 for some reason</li>
<li>Looking closer, I see that <code>maven</code> depends on <code>java7-runtime-headless</code>, which is indeed provided by <code>openjdk-8-jre-headless</code></li>
<li>So it must be one of Maven&rsquo;s dependencies&hellip;</li>
<li>I will watch it for a few days because it could be an issue that will be resolved before Ubuntu 18.04&rsquo;s release</li>
<li>Otherwise I will post a bug to the ubuntu-release mailing list</li>
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