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Add notes for 2023-01-12

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Alan Orth 2023-01-12 23:11:42 +03:00
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content/posts/2023-01.md
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@ -103,4 +103,37 @@ $ csvcut -c 'cg.contributor.affiliation[en_US]' ~/Downloads/2023-01-09-initiativ
- Export the CGSpace Initiatives collection to check for missing regions and collection mappings - Export the CGSpace Initiatives collection to check for missing regions and collection mappings
## 2023-01-11
- I'm trying the DSpace 7 REST API again
- While following onathe [DSpace 7 REST API authentication docs](https://github.com/DSpace/RestContract/blob/main/authentication.md) I still cannot log in via curl on the command line because I get a `Access is denied. Invalid CSRF token.` message
- Logging in via the HAL Browser works...
- Someone on the DSpace Slack mentioned that the [authentication documentation is out of date](https://github.com/DSpace/RestContract/issues/209) and we need to specify the cookie too
- I tried it and finally got it to work:
```console
$ curl --head https://dspace7test.ilri.org/server/api
...
set-cookie: DSPACE-XSRF-COOKIE=42c78c56-613d-464f-89ea-79142fc5b519; Path=/server; Secure; HttpOnly; SameSite=None
dspace-xsrf-token: 42c78c56-613d-464f-89ea-79142fc5b519
$ curl -v -X POST https://dspace7test.ilri.org/server/api/authn/login --data "user=alantest%40cgiar.org&password=dspace" -H "X-XSRF-TOKEN: 42c78c56-613d-464f-89ea-79142fc5b519" -b "DSPACE-XSRF-COOKIE=42c78c56-613d-464f-89ea-79142fc5b519"
...
authorization: Bearer eyJh...9-0
$ curl -v "https://dspace7test.ilri.org/api/core/items" -H "Authorization: Bearer eyJh...9-0"
```
- I created [a pull request](https://github.com/DSpace/RestContract/pull/213) to fix the docs
- I did quite a lot of cleanup and updates on the IFPRI batch items for the Gender Equality batch upload
- Then I uploaded them to CGSpace
- I added about twenty more ORCID identifiers to my list and tagged them on CGSpace
## 2023-01-12
- I exported the entire CGSpace and did some cleanups on all metadata in OpenRefine
- I was primarily interested in normalizing the DOIs, but I also normalized a bunch of publishing places
- After this imports I will export it again to do the Initiative and region mappings
- I ran the `fix-initiative-mappings.py` script and got forty-nine new mappings...
- I added several dozen new ORCID identifiers to my list and tagged ~500 on CGSpace
- Start a harvest on AReS
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->

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@ -19,7 +19,7 @@ I see we have some new ones that aren&rsquo;t in our list if I combine with this
<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-01/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-01/" />
<meta property="article:published_time" content="2023-01-01T08:44:36+03:00" /> <meta property="article:published_time" content="2023-01-01T08:44:36+03:00" />
<meta property="article:modified_time" content="2023-01-04T17:08:14+03:00" /> <meta property="article:modified_time" content="2023-01-10T22:22:03+03:00" />
@ -44,9 +44,9 @@ I see we have some new ones that aren&rsquo;t in our list if I combine with this
"@type": "BlogPosting", "@type": "BlogPosting",
"headline": "January, 2023", "headline": "January, 2023",
"url": "https://alanorth.github.io/cgspace-notes/2023-01/", "url": "https://alanorth.github.io/cgspace-notes/2023-01/",
"wordCount": "768", "wordCount": "1011",
"datePublished": "2023-01-01T08:44:36+03:00", "datePublished": "2023-01-01T08:44:36+03:00",
"dateModified": "2023-01-04T17:08:14+03:00", "dateModified": "2023-01-10T22:22:03+03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -241,6 +241,46 @@ I see we have some new ones that aren&rsquo;t in our list if I combine with this
<ul> <ul>
<li>Export the CGSpace Initiatives collection to check for missing regions and collection mappings</li> <li>Export the CGSpace Initiatives collection to check for missing regions and collection mappings</li>
</ul> </ul>
<h2 id="2023-01-11">2023-01-11</h2>
<ul>
<li>I&rsquo;m trying the DSpace 7 REST API again
<ul>
<li>While following onathe <a href="https://github.com/DSpace/RestContract/blob/main/authentication.md">DSpace 7 REST API authentication docs</a> I still cannot log in via curl on the command line because I get a <code>Access is denied. Invalid CSRF token.</code> message</li>
<li>Logging in via the HAL Browser works&hellip;</li>
<li>Someone on the DSpace Slack mentioned that the <a href="https://github.com/DSpace/RestContract/issues/209">authentication documentation is out of date</a> and we need to specify the cookie too</li>
<li>I tried it and finally got it to work:</li>
</ul>
</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl --head https://dspace7test.ilri.org/server/api
</span></span><span style="display:flex;"><span>...
</span></span><span style="display:flex;"><span>set-cookie: DSPACE-XSRF-COOKIE=42c78c56-613d-464f-89ea-79142fc5b519; Path=/server; Secure; HttpOnly; SameSite=None
</span></span><span style="display:flex;"><span>dspace-xsrf-token: 42c78c56-613d-464f-89ea-79142fc5b519
</span></span><span style="display:flex;"><span>$ curl -v -X POST https://dspace7test.ilri.org/server/api/authn/login --data <span style="color:#e6db74">&#34;user=alantest%40cgiar.org&amp;password=dspace&#34;</span> -H <span style="color:#e6db74">&#34;X-XSRF-TOKEN: 42c78c56-613d-464f-89ea-79142fc5b519&#34;</span> -b <span style="color:#e6db74">&#34;DSPACE-XSRF-COOKIE=42c78c56-613d-464f-89ea-79142fc5b519&#34;</span>
</span></span><span style="display:flex;"><span>...
</span></span><span style="display:flex;"><span>authorization: Bearer eyJh...9-0
</span></span><span style="display:flex;"><span>$ curl -v <span style="color:#e6db74">&#34;https://dspace7test.ilri.org/api/core/items&#34;</span> -H <span style="color:#e6db74">&#34;Authorization: Bearer eyJh...9-0&#34;</span>
</span></span></code></pre></div><ul>
<li>I created <a href="https://github.com/DSpace/RestContract/pull/213">a pull request</a> to fix the docs</li>
<li>I did quite a lot of cleanup and updates on the IFPRI batch items for the Gender Equality batch upload
<ul>
<li>Then I uploaded them to CGSpace</li>
</ul>
</li>
<li>I added about twenty more ORCID identifiers to my list and tagged them on CGSpace</li>
</ul>
<h2 id="2023-01-12">2023-01-12</h2>
<ul>
<li>I exported the entire CGSpace and did some cleanups on all metadata in OpenRefine
<ul>
<li>I was primarily interested in normalizing the DOIs, but I also normalized a bunch of publishing places</li>
<li>After this imports I will export it again to do the Initiative and region mappings</li>
<li>I ran the <code>fix-initiative-mappings.py</code> script and got forty-nine new mappings&hellip;</li>
</ul>
</li>
<li>I added several dozen new ORCID identifiers to my list and tagged ~500 on CGSpace</li>
<li>Start a harvest on AReS</li>
</ul>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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