diff --git a/content/posts/2020-11.md b/content/posts/2020-11.md index b3ac797e5..18819ecac 100644 --- a/content/posts/2020-11.md +++ b/content/posts/2020-11.md @@ -259,4 +259,97 @@ org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Error whil at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81) ``` +## 2020-11-16 + +- Users are having issues submitting items to CGSpace + - Looking at the data I see that connections skyrocketed since DSpace 6 upgrade yesterday, and they are all in "waiting for lock" state: + +![PostgreSQL connections week](/cgspace-notes/2020/11/postgres_connections_ALL-week.png) +![PostgreSQL locks week](/cgspace-notes/2020/11/postgres_locks_ALL-week.png) + +- There are almost 1,500 locks: + +``` +$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l +1494 +``` + +- I sent a mail to the dspace-tech mailing list to ask for help... + - For now I just restarted PostgreSQL and a few users were able to complete submissions... +- While processing the statistics-2018 Solr core I got the *same* memory error that I have gotten every time I processed this core in testing: + +``` +Exception: Java heap space +java.lang.OutOfMemoryError: Java heap space + at java.util.Arrays.copyOf(Arrays.java:3332) + at java.lang.AbstractStringBuilder.ensureCapacityInternal(AbstractStringBuilder.java:124) + at java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:448) + at java.lang.StringBuffer.append(StringBuffer.java:270) + at java.io.StringWriter.write(StringWriter.java:101) + at org.apache.solr.common.util.XML.writeXML(XML.java:133) + at org.apache.solr.client.solrj.util.ClientUtils.writeVal(SourceFile:160) + at org.apache.solr.client.solrj.util.ClientUtils.writeXML(SourceFile:128) + at org.apache.solr.client.solrj.request.UpdateRequest.writeXML(UpdateRequest.java:365) + at org.apache.solr.client.solrj.request.UpdateRequest.getXML(UpdateRequest.java:281) + at org.apache.solr.client.solrj.request.RequestWriter.getContentStream(RequestWriter.java:67) + at org.apache.solr.client.solrj.request.RequestWriter$LazyContentStream.getDelegate(RequestWriter.java:95) + at org.apache.solr.client.solrj.request.RequestWriter$LazyContentStream.getName(RequestWriter.java:105) + at org.apache.solr.client.solrj.impl.HttpSolrServer.createMethod(HttpSolrServer.java:302) + at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:210) + at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:206) + at org.apache.solr.client.solrj.request.AbstractUpdateRequest.process(AbstractUpdateRequest.java:124) + at org.apache.solr.client.solrj.SolrServer.add(SolrServer.java:68) + at org.apache.solr.client.solrj.SolrServer.add(SolrServer.java:54) + at org.dspace.util.SolrUpgradePre6xStatistics.batchUpdateStats(SolrUpgradePre6xStatistics.java:161) + at org.dspace.util.SolrUpgradePre6xStatistics.run(SolrUpgradePre6xStatistics.java:456) + at org.dspace.util.SolrUpgradePre6xStatistics.main(SolrUpgradePre6xStatistics.java:365) + at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) + at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) + at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) + at java.lang.reflect.Method.invoke(Method.java:498) + at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229) + at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81) +``` + +- I increased the Java heap memory to 4096MB and restarted the processing + - After a few hours I got the following error, which I have gotten several times over the last few months: + +``` +Exception: Error while creating field 'p_group_id{type=uuid,properties=indexed,stored,multiValued}' from value '10' +org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Error while creating field 'p_group_id{type=uuid,properties=indexed,stored,multiValued}' from value '10' + at org.apache.solr.client.solrj.impl.HttpSolrServer.executeMethod(HttpSolrServer.java:552) + at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:210) + at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:206) + at org.apache.solr.client.solrj.request.AbstractUpdateRequest.process(AbstractUpdateRequest.java:124) + at org.apache.solr.client.solrj.SolrServer.add(SolrServer.java:68) + at org.apache.solr.client.solrj.SolrServer.add(SolrServer.java:54) + at org.dspace.util.SolrUpgradePre6xStatistics.batchUpdateStats(SolrUpgradePre6xStatistics.java:161) + at org.dspace.util.SolrUpgradePre6xStatistics.run(SolrUpgradePre6xStatistics.java:456) + at org.dspace.util.SolrUpgradePre6xStatistics.main(SolrUpgradePre6xStatistics.java:365) + at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) + at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) + at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) + at java.lang.reflect.Method.invoke(Method.java:498) + at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229) + at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81) +``` + +## 2020-11-17 + +- Chat with Peter about using some remaining CRP Livestock open access money to fund more work on OpenRXV / AReS + - I will create GitHub issues for each of the things we talked about and then create ToRs to send to CodeObia for a quote +- Continue migrating Solr statistics to DSpace 6 UUID format after the upgrade on Sunday +- Regarding the IWMI issue about flagships and strategic priorities we can use CRP Livestock as an example because all their [flagships are mapped to collections](https://cgspace.cgiar.org/handle/10568/80102) +- Database issues are worse today... + +![PostgreSQL connections week](/cgspace-notes/2020/11/postgres_connections_ALL-week2.png) +![PostgreSQL locks week](/cgspace-notes/2020/11/postgres_locks_ALL-week2.png) + +- There are over 2,000 locks: + +``` +$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l +2071 +``` + diff --git a/content/posts/cgspace-dspace6-upgrade.md b/content/posts/cgspace-dspace6-upgrade.md new file mode 100644 index 000000000..01072400f --- /dev/null +++ b/content/posts/cgspace-dspace6-upgrade.md @@ -0,0 +1,294 @@ ++++ +title = "CGSpace DSpace 6 Upgrade" +date = 2020-11-15T13:27:35+02:00 +description = "Documenting the DSpace 6 upgrade." +categories = ["Notes"] +tags = ["Migration"] +url = "cgspace-dspace6-upgrade" ++++ + +Notes about the DSpace 6 upgrade on CGSpace in 2020-11. + + + +- [Processing Solr Statistics With solr-upgrade-statistics-6x](#processing-solr-statistics-with-solr-upgrade-statistics-6x) + - [Current year's statistics core](#statistics) + - [statistics-2019 core](#statistics-2019) + - [statistics-2018 core](#statistics-2018) + - [statistics-2017 core](#statistics-2017) + - [statistics-2016 core](#statistics-2016) + - [statistics-2015 core](#statistics-2015) + - [statistics-2014 core](#statistics-2014) + - [statistics-2013 core](#statistics-2013) + +## Processing Solr Statistics With solr-upgrade-statistics-6x +After the main upgrade process was finished and DSpace was running I started processing the Solr statistics with `solr-upgrade-statistics-6x` to migrate all IDs to UUIDs. + +### statistics +First process the current year's statistics core: + +```console +$ export JAVA_OPTS='-Dfile.encoding=UTF-8 -Xmx2048m' +$ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics +... +================================================================= + *** Statistics Records with Legacy Id *** + + 3,817,407 Bistream View + 1,693,443 Item View + 105,974 Collection View + 62,383 Community View + 163,192 Community Search + 162,581 Collection Search + 470,288 Unexpected Type & Full Site + -------------------------------------- + 6,475,268 TOTAL +================================================================= +``` + +After several rounds of processing it finished. Here are some statistics about unmigrated documents: + +- 227,000: `(*:* NOT id:/.{36}/) AND (*:* NOT id:/.+-unmigrated/)` +- 471,000: `id:/.+-unmigrated/` +- 698,000: `*:* NOT id:/.{36}/` +- Majority are `type: 5` (aka SITE, according to `Constants.java`) so we can purge them: + +```console +$ curl -s "http://localhost:8081/solr/statistics/update?softCommit=true" -H "Content-Type: text/xml" --data-binary "*:* NOT id:/.{36}/" +``` + +### statistics-2019 +Processing the statistics-2019 core: + +```console +$ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics +... +================================================================= + *** Statistics Records with Legacy Id *** + + 5,569,344 Bistream View + 2,179,105 Item View + 117,194 Community View + 104,091 Collection View + 774,138 Community Search + 568,347 Collection Search + 1,482,620 Unexpected Type & Full Site + -------------------------------------- + 10,794,839 TOTAL +================================================================= +``` + +After several rounds of processing it finished. Here are some statistics about unmigrated documents: + +- 2,690,309: `(*:* NOT id:/.{36}/) AND (*:* NOT id:/.+-unmigrated/)` +- 1,494,587: `id:/.+-unmigrated/` +- 4,184,896: `*:* NOT id:/.{36}/` +- 4,172,929 are `type: 5` (aka SITE) so we can purge them: + +```console +$ curl -s "http://localhost:8081/solr/statistics-2019/update?softCommit=true" -H "Content-Type: text/xml" --data-binary "*:* NOT id:/.{36}/" +``` + +### statistics-2018 +Processing the statistics-2018 core: + +```console +$ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2018 +... +================================================================= + *** Statistics Records with Legacy Id *** + + 3,561,532 Bistream View + 1,129,326 Item View + 97,401 Community View + 63,508 Collection View + 207,827 Community Search + 43,752 Collection Search + 457,820 Unexpected Type & Full Site + -------------------------------------- + 5,561,166 TOTAL +================================================================= +``` + +After some time I got an error about Java heap space so I increased the JVM memory and restarted processing: + +```console +$ export JAVA_OPTS='-Dfile.encoding=UTF-8 -Xmx4096m' +$ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2018 +``` + +Eventually the processing finished. Here are some statistics about unmigrated documents: + +- 365,473: `(*:* NOT id:/.{36}/) AND (*:* NOT id:/.+-unmigrated/)` +- 546,955: `id:/.+-unmigrated/` +- 923,158: `*:* NOT id:/.{36}/` +- 823,293: are `type: 5` so we can purge them: + +```console +$ curl -s "http://localhost:8081/solr/statistics-2018/update?softCommit=true" -H "Content-Type: text/xml" --data-binary "*:* NOT id:/.{36}/" +``` + +## statistics-2017 + +Processing the statistics-2017 core: + +```console +$ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2017 +... +================================================================= + *** Statistics Records with Legacy Id *** + + 2,529,208 Bistream View + 1,618,717 Item View + 144,945 Community View + 74,249 Collection View + 479,647 Community Search + 114,658 Collection Search + 852,215 Unexpected Type & Full Site + -------------------------------------- + 5,813,639 TOTAL +================================================================= +``` + +Eventually the processing finished. Here are some statistics about unmigrated documents: + +- 808,309: `(*:* NOT id:/.{36}/) AND (*:* NOT id:/.+-unmigrated/)` +- 893,868: `id:/.+-unmigrated/` +- 1,702,177: `*:* NOT id:/.{36}/` +- 1,660,524 are `type: 5` (SITE) so we can purge them: + +```console +$ curl -s "http://localhost:8081/solr/statistics-2017/update?softCommit=true" -H "Content-Type: text/xml" --data-binary "*:* NOT id:/.{36}/" +``` + +### statistics-2016 + +Processing the statistics-2016 core: + +```console +$ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2016 +... +================================================================= + *** Statistics Records with Legacy Id *** + + 1,765,924 Bistream View + 1,151,575 Item View + 187,110 Community View + 51,204 Collection View + 347,382 Community Search + 66,605 Collection Search + 620,298 Unexpected Type & Full Site + -------------------------------------- + 4,190,098 TOTAL +================================================================= +``` + +- 849,408: `(*:* NOT id:/.{36}/) AND (*:* NOT id:/.+-unmigrated/)` +- 627,747: `id:/.+-unmigrated/` +- 1,477,155: `*:* NOT id:/.{36}/` +- 1,469,706 are `type: 5` (SITE) so we can purge them: + +```console +$ curl -s "http://localhost:8081/solr/statistics-2016/update?softCommit=true" -H "Content-Type: text/xml" --data-binary "*:* NOT id:/.{36}/" +``` + +### statistics-2015 + +Processing the statistics-2015 core: + +```console +$ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2015 +... +================================================================= + *** Statistics Records with Legacy Id *** + + 990,916 Bistream View + 506,070 Item View + 116,153 Community View + 33,282 Collection View + 21,062 Community Search + 10,788 Collection Search + 52,107 Unexpected Type & Full Site + -------------------------------------- + 1,730,378 TOTAL +================================================================= +``` + +Summary of stats after processing: + +- 195,293: `(*:* NOT id:/.{36}/) AND (*:* NOT id:/.+-unmigrated/)` +- 67,146: `id:/.+-unmigrated/` +- 262,439: `*:* NOT id:/.{36}/` +- 247,400 are `type: 5` (SITE) so we can purge them: + +```console +$ curl -s "http://localhost:8081/solr/statistics-2015/update?softCommit=true" -H "Content-Type: text/xml" --data-binary "*:* NOT id:/.{36}/" +``` + +## statistics-2014 + +Processing the statistics-2014 core: + +```console +$ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2014 +... +================================================================= + *** Statistics Records with Legacy Id *** + + 2,381,603 Item View + 1,323,357 Bistream View + 501,545 Community View + 247,805 Collection View + 250 Collection Search + 188 Community Search + 50 Item Search + 10,918 Unexpected Type & Full Site + -------------------------------------- + 4,465,716 TOTAL +================================================================= +``` + +Summary of unmigrated documents after processing: + +- 182,131: `(*:* NOT id:/.{36}/) AND (*:* NOT id:/.+-unmigrated/)` +- 39,947: `id:/.+-unmigrated/` +- 222,078: `*:* NOT id:/.{36}/` +- 188,791 are `type: 5` (SITE) so we can purge them: + +```console +$ curl -s "http://localhost:8081/solr/statistics-2014/update?softCommit=true" -H "Content-Type: text/xml" --data-binary "*:* NOT id:/.{36}/" +``` + +## statistics-2013 + +Processing the statistics-2013 core: + +```console +$ chrt -b 0 dspace solr-upgrade-statistics-6x -n 2500000 -i statistics-2013 +... +================================================================= + *** Statistics Records with Legacy Id *** + + 2,352,124 Item View + 1,117,676 Bistream View + 575,711 Community View + 171,639 Collection View + 248 Item Search + 7 Collection Search + 5 Community Search + 1,452 Unexpected Type & Full Site + -------------------------------------- + 4,218,862 TOTAL +================================================================= +``` + +Summary of unmigrated docs after processing: + +- 2,548 : `(*:* NOT id:/.{36}/) AND (*:* NOT id:/.+-unmigrated/)` +- 29,772: `id:/.+-unmigrated/` +- 32,320: `*:* NOT id:/.{36}/` +- 15,691 are `type: 5` (SITE) so we can purge them: + +```console +$ curl -s "http://localhost:8081/solr/statistics-2013/update?softCommit=true" -H "Content-Type: text/xml" --data-binary "*:* NOT id:/.{36}/" +``` diff --git a/docs/2015-11/index.html b/docs/2015-11/index.html index b6d0507b8..5356f2e83 100644 --- a/docs/2015-11/index.html +++ b/docs/2015-11/index.html @@ -239,6 +239,8 @@ db.statementpool = true
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diff --git a/docs/2015-12/index.html b/docs/2015-12/index.html index 4257f340f..aaf5ebc5e 100644 --- a/docs/2015-12/index.html +++ b/docs/2015-12/index.html @@ -261,6 +261,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
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diff --git a/docs/2016-01/index.html b/docs/2016-01/index.html index 9d73c82fe..d18a61197 100644 --- a/docs/2016-01/index.html +++ b/docs/2016-01/index.html @@ -197,6 +197,8 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
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diff --git a/docs/2016-02/index.html b/docs/2016-02/index.html index 1024c1827..b53816233 100644 --- a/docs/2016-02/index.html +++ b/docs/2016-02/index.html @@ -375,6 +375,8 @@ Bitstream: tést señora alimentación.pdf
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diff --git a/docs/2016-03/index.html b/docs/2016-03/index.html index 18a823ffc..46cde74a2 100644 --- a/docs/2016-03/index.html +++ b/docs/2016-03/index.html @@ -313,6 +313,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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diff --git a/docs/2016-04/index.html b/docs/2016-04/index.html index ebd81e470..09859e9af 100644 --- a/docs/2016-04/index.html +++ b/docs/2016-04/index.html @@ -492,6 +492,8 @@ dspace.log.2016-04-27:7271
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diff --git a/docs/2016-05/index.html b/docs/2016-05/index.html index 17bbcac58..3d02eb5a6 100644 --- a/docs/2016-05/index.html +++ b/docs/2016-05/index.html @@ -368,6 +368,8 @@ sys 0m20.540s
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diff --git a/docs/2016-06/index.html b/docs/2016-06/index.html index 25048fd90..9cafeda62 100644 --- a/docs/2016-06/index.html +++ b/docs/2016-06/index.html @@ -406,6 +406,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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diff --git a/docs/2016-07/index.html b/docs/2016-07/index.html index 7a362462d..44a978fc0 100644 --- a/docs/2016-07/index.html +++ b/docs/2016-07/index.html @@ -322,6 +322,8 @@ discovery.index.authority.ignore-variants=true
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diff --git a/docs/2016-08/index.html b/docs/2016-08/index.html index cf285f4f7..a2020ec40 100644 --- a/docs/2016-08/index.html +++ b/docs/2016-08/index.html @@ -386,6 +386,8 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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diff --git a/docs/2016-09/index.html b/docs/2016-09/index.html index 99e95d29b..a4e062c7c 100644 --- a/docs/2016-09/index.html +++ b/docs/2016-09/index.html @@ -603,6 +603,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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    4. @@ -611,8 +613,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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diff --git a/docs/2016-10/index.html b/docs/2016-10/index.html index 986d58400..4e93429e7 100644 --- a/docs/2016-10/index.html +++ b/docs/2016-10/index.html @@ -369,6 +369,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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    4. @@ -377,8 +379,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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diff --git a/docs/2016-11/index.html b/docs/2016-11/index.html index 9ac3a7717..61f44f64f 100644 --- a/docs/2016-11/index.html +++ b/docs/2016-11/index.html @@ -545,6 +545,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
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diff --git a/docs/2016-12/index.html b/docs/2016-12/index.html index 7d127674c..6e3578e53 100644 --- a/docs/2016-12/index.html +++ b/docs/2016-12/index.html @@ -781,6 +781,8 @@ $ exit
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diff --git a/docs/2017-01/index.html b/docs/2017-01/index.html index 32d6a67cb..6ff69a639 100644 --- a/docs/2017-01/index.html +++ b/docs/2017-01/index.html @@ -366,6 +366,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
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diff --git a/docs/2017-02/index.html b/docs/2017-02/index.html index d7bba51d8..5aadcd0ee 100644 --- a/docs/2017-02/index.html +++ b/docs/2017-02/index.html @@ -421,6 +421,8 @@ COPY 1968
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diff --git a/docs/2017-03/index.html b/docs/2017-03/index.html index b38ebaa32..7adbb390f 100644 --- a/docs/2017-03/index.html +++ b/docs/2017-03/index.html @@ -352,6 +352,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
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  3. October, 2020
    4. @@ -360,8 +362,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2017-04/index.html b/docs/2017-04/index.html index 21ce453c2..2867e54be 100644 --- a/docs/2017-04/index.html +++ b/docs/2017-04/index.html @@ -582,6 +582,8 @@ $ gem install compass -v 1.0.3
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -590,8 +592,6 @@ $ gem install compass -v 1.0.3
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2017-05/index.html b/docs/2017-05/index.html index 75a6970b0..d7edd13af 100644 --- a/docs/2017-05/index.html +++ b/docs/2017-05/index.html @@ -388,6 +388,8 @@ UPDATE 187
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -396,8 +398,6 @@ UPDATE 187
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2017-06/index.html b/docs/2017-06/index.html index 6f47b43db..2587beb47 100644 --- a/docs/2017-06/index.html +++ b/docs/2017-06/index.html @@ -267,6 +267,8 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -275,8 +277,6 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2017-07/index.html b/docs/2017-07/index.html index bc866d173..1f593ae0b 100644 --- a/docs/2017-07/index.html +++ b/docs/2017-07/index.html @@ -272,6 +272,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -280,8 +282,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2017-08/index.html b/docs/2017-08/index.html index d251a94f2..823e24195 100644 --- a/docs/2017-08/index.html +++ b/docs/2017-08/index.html @@ -514,6 +514,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -522,8 +524,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2017-09/index.html b/docs/2017-09/index.html index e77d61db0..7ead7e7cd 100644 --- a/docs/2017-09/index.html +++ b/docs/2017-09/index.html @@ -656,6 +656,8 @@ Cert Status: good
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -664,8 +666,6 @@ Cert Status: good
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2017-10/index.html b/docs/2017-10/index.html index fc3828a1d..0f38d0ab7 100644 --- a/docs/2017-10/index.html +++ b/docs/2017-10/index.html @@ -440,6 +440,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -448,8 +450,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2017-11/index.html b/docs/2017-11/index.html index f2339e5ca..8a5e0353b 100644 --- a/docs/2017-11/index.html +++ b/docs/2017-11/index.html @@ -941,6 +941,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -949,8 +951,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2017-12/index.html b/docs/2017-12/index.html index 2fcfecd25..c8d8ebc53 100644 --- a/docs/2017-12/index.html +++ b/docs/2017-12/index.html @@ -780,6 +780,8 @@ DELETE 20
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -788,8 +790,6 @@ DELETE 20
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-01/index.html b/docs/2018-01/index.html index f60d8ae2a..26799a768 100644 --- a/docs/2018-01/index.html +++ b/docs/2018-01/index.html @@ -1449,6 +1449,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -1457,8 +1459,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-02/index.html b/docs/2018-02/index.html index d3bd460ca..222a4724e 100644 --- a/docs/2018-02/index.html +++ b/docs/2018-02/index.html @@ -1036,6 +1036,8 @@ UPDATE 3
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -1044,8 +1046,6 @@ UPDATE 3
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-03/index.html b/docs/2018-03/index.html index 2fca2681d..8add149f7 100644 --- a/docs/2018-03/index.html +++ b/docs/2018-03/index.html @@ -582,6 +582,8 @@ Fixed 5 occurences of: GENEBANKS
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -590,8 +592,6 @@ Fixed 5 occurences of: GENEBANKS
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-04/index.html b/docs/2018-04/index.html index 1f77e7387..0acdfd4e8 100644 --- a/docs/2018-04/index.html +++ b/docs/2018-04/index.html @@ -591,6 +591,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -599,8 +601,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-05/index.html b/docs/2018-05/index.html index e4df225e1..539a58a63 100644 --- a/docs/2018-05/index.html +++ b/docs/2018-05/index.html @@ -520,6 +520,8 @@ $ psql -h localhost -U postgres dspacetest
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -528,8 +530,6 @@ $ psql -h localhost -U postgres dspacetest
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-06/index.html b/docs/2018-06/index.html index 79969a1e6..791c6e003 100644 --- a/docs/2018-06/index.html +++ b/docs/2018-06/index.html @@ -514,6 +514,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -522,8 +524,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-07/index.html b/docs/2018-07/index.html index 7953cfd80..a81e19e5c 100644 --- a/docs/2018-07/index.html +++ b/docs/2018-07/index.html @@ -566,6 +566,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -574,8 +576,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-08/index.html b/docs/2018-08/index.html index 14bd59ddf..58c4eeb48 100644 --- a/docs/2018-08/index.html +++ b/docs/2018-08/index.html @@ -439,6 +439,8 @@ $ dspace database migrate ignored
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -447,8 +449,6 @@ $ dspace database migrate ignored
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-09/index.html b/docs/2018-09/index.html index 89ee0b1ca..64de6604f 100644 --- a/docs/2018-09/index.html +++ b/docs/2018-09/index.html @@ -745,6 +745,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -753,8 +755,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-10/index.html b/docs/2018-10/index.html index ef1e37b6b..e925ddf1d 100644 --- a/docs/2018-10/index.html +++ b/docs/2018-10/index.html @@ -653,6 +653,8 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -661,8 +663,6 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-11/index.html b/docs/2018-11/index.html index 14a01adb6..17079de46 100644 --- a/docs/2018-11/index.html +++ b/docs/2018-11/index.html @@ -550,6 +550,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -558,8 +560,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2018-12/index.html b/docs/2018-12/index.html index fc864bb9f..19dac4158 100644 --- a/docs/2018-12/index.html +++ b/docs/2018-12/index.html @@ -591,6 +591,8 @@ UPDATE 1
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -599,8 +601,6 @@ UPDATE 1
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-01/index.html b/docs/2019-01/index.html index b59002380..3fa516909 100644 --- a/docs/2019-01/index.html +++ b/docs/2019-01/index.html @@ -1261,6 +1261,8 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -1269,8 +1271,6 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-02/index.html b/docs/2019-02/index.html index 996fa5576..dd3763821 100644 --- a/docs/2019-02/index.html +++ b/docs/2019-02/index.html @@ -1341,6 +1341,8 @@ Please see the DSpace documentation for assistance.
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -1349,8 +1351,6 @@ Please see the DSpace documentation for assistance.
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-03/index.html b/docs/2019-03/index.html index 3953ac5c2..529a4ed66 100644 --- a/docs/2019-03/index.html +++ b/docs/2019-03/index.html @@ -1205,6 +1205,8 @@ sys 0m2.551s
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -1213,8 +1215,6 @@ sys 0m2.551s
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-04/index.html b/docs/2019-04/index.html index d3383143a..2c9e3889e 100644 --- a/docs/2019-04/index.html +++ b/docs/2019-04/index.html @@ -1296,6 +1296,8 @@ UPDATE 14
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -1304,8 +1306,6 @@ UPDATE 14
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-05/index.html b/docs/2019-05/index.html index 9f2233fce..49b37b265 100644 --- a/docs/2019-05/index.html +++ b/docs/2019-05/index.html @@ -628,6 +628,8 @@ COPY 64871
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -636,8 +638,6 @@ COPY 64871
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-06/index.html b/docs/2019-06/index.html index ed5ae047a..08c8d324c 100644 --- a/docs/2019-06/index.html +++ b/docs/2019-06/index.html @@ -314,6 +314,8 @@ UPDATE 2
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -322,8 +324,6 @@ UPDATE 2
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-07/index.html b/docs/2019-07/index.html index 4732bc56e..fd5b53b0e 100644 --- a/docs/2019-07/index.html +++ b/docs/2019-07/index.html @@ -551,6 +551,8 @@ issn.validate('1020-3362')
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -559,8 +561,6 @@ issn.validate('1020-3362')
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-08/index.html b/docs/2019-08/index.html index db1604e77..3c595fe80 100644 --- a/docs/2019-08/index.html +++ b/docs/2019-08/index.html @@ -570,6 +570,8 @@ sys 2m27.496s
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -578,8 +580,6 @@ sys 2m27.496s
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-09/index.html b/docs/2019-09/index.html index 64cf03124..32ecac81c 100644 --- a/docs/2019-09/index.html +++ b/docs/2019-09/index.html @@ -578,6 +578,8 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -586,8 +588,6 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-10/index.html b/docs/2019-10/index.html index 3c8ddb6d3..08b88af06 100644 --- a/docs/2019-10/index.html +++ b/docs/2019-10/index.html @@ -382,6 +382,8 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -390,8 +392,6 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-11/index.html b/docs/2019-11/index.html index 938f1484c..de9908735 100644 --- a/docs/2019-11/index.html +++ b/docs/2019-11/index.html @@ -689,6 +689,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -697,8 +699,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2019-12/index.html b/docs/2019-12/index.html index 4b41f480d..8c254b889 100644 --- a/docs/2019-12/index.html +++ b/docs/2019-12/index.html @@ -401,6 +401,8 @@ UPDATE 1
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -409,8 +411,6 @@ UPDATE 1
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-01/index.html b/docs/2020-01/index.html index caa80b254..7c9fbb249 100644 --- a/docs/2020-01/index.html +++ b/docs/2020-01/index.html @@ -601,6 +601,8 @@ COPY 2900
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -609,8 +611,6 @@ COPY 2900
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-02/index.html b/docs/2020-02/index.html index 2568b8ac8..42a696d64 100644 --- a/docs/2020-02/index.html +++ b/docs/2020-02/index.html @@ -1272,6 +1272,8 @@ Moving: 21993 into core statistics-2019
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -1280,8 +1282,6 @@ Moving: 21993 into core statistics-2019
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-03/index.html b/docs/2020-03/index.html index ef4f5412d..e150b8488 100644 --- a/docs/2020-03/index.html +++ b/docs/2020-03/index.html @@ -481,6 +481,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -489,8 +491,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-04/index.html b/docs/2020-04/index.html index 1d264c164..2400cddea 100644 --- a/docs/2020-04/index.html +++ b/docs/2020-04/index.html @@ -655,6 +655,8 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -663,8 +665,6 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-05/index.html b/docs/2020-05/index.html index eac718c6f..ec6d6c1c9 100644 --- a/docs/2020-05/index.html +++ b/docs/2020-05/index.html @@ -474,6 +474,8 @@ Caused by: java.lang.NullPointerException
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -482,8 +484,6 @@ Caused by: java.lang.NullPointerException
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-06/index.html b/docs/2020-06/index.html index f88659778..9d7e525ee 100644 --- a/docs/2020-06/index.html +++ b/docs/2020-06/index.html @@ -808,6 +808,8 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -816,8 +818,6 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-07/index.html b/docs/2020-07/index.html index 46db3c3d5..ff408aef3 100644 --- a/docs/2020-07/index.html +++ b/docs/2020-07/index.html @@ -1139,6 +1139,8 @@ Fixed 4 occurences of: Muloi, D.M.
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -1147,8 +1149,6 @@ Fixed 4 occurences of: Muloi, D.M.
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-08/index.html b/docs/2020-08/index.html index 861a59eb4..277687b8f 100644 --- a/docs/2020-08/index.html +++ b/docs/2020-08/index.html @@ -795,6 +795,8 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -803,8 +805,6 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-09/index.html b/docs/2020-09/index.html index 0250037ff..ef40fcb17 100644 --- a/docs/2020-09/index.html +++ b/docs/2020-09/index.html @@ -714,6 +714,8 @@ solr_query_params = {
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -722,8 +724,6 @@ solr_query_params = {
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-10/index.html b/docs/2020-10/index.html index c2b3856cf..2dcc1fe89 100644 --- a/docs/2020-10/index.html +++ b/docs/2020-10/index.html @@ -1238,6 +1238,8 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -1246,8 +1248,6 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020-11/index.html b/docs/2020-11/index.html index 94423a81e..e00337ead 100644 --- a/docs/2020-11/index.html +++ b/docs/2020-11/index.html @@ -39,7 +39,7 @@ So far we’ve spent at least fifty hours to process the statistics and stat "@type": "BlogPosting", "headline": "November, 2020", "url": "https://alanorth.github.io/cgspace-notes/2020-11/", - "wordCount": "1762", + "wordCount": "2131", "datePublished": "2020-11-01T13:11:54+02:00", "dateModified": "2020-11-16T10:53:45+02:00", "author": { @@ -391,6 +391,101 @@ org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Error whil at java.lang.reflect.Method.invoke(Method.java:498) at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229) at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81) +

2020-11-16

+ +

PostgreSQL connections week +PostgreSQL locks week

+ +
$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
+1494
+
+
Exception: Java heap space
+java.lang.OutOfMemoryError: Java heap space
+        at java.util.Arrays.copyOf(Arrays.java:3332)
+        at java.lang.AbstractStringBuilder.ensureCapacityInternal(AbstractStringBuilder.java:124)
+        at java.lang.AbstractStringBuilder.append(AbstractStringBuilder.java:448)
+        at java.lang.StringBuffer.append(StringBuffer.java:270)
+        at java.io.StringWriter.write(StringWriter.java:101)
+        at org.apache.solr.common.util.XML.writeXML(XML.java:133)
+        at org.apache.solr.client.solrj.util.ClientUtils.writeVal(SourceFile:160)
+        at org.apache.solr.client.solrj.util.ClientUtils.writeXML(SourceFile:128)
+        at org.apache.solr.client.solrj.request.UpdateRequest.writeXML(UpdateRequest.java:365)
+        at org.apache.solr.client.solrj.request.UpdateRequest.getXML(UpdateRequest.java:281)
+        at org.apache.solr.client.solrj.request.RequestWriter.getContentStream(RequestWriter.java:67)
+        at org.apache.solr.client.solrj.request.RequestWriter$LazyContentStream.getDelegate(RequestWriter.java:95)
+        at org.apache.solr.client.solrj.request.RequestWriter$LazyContentStream.getName(RequestWriter.java:105)
+        at org.apache.solr.client.solrj.impl.HttpSolrServer.createMethod(HttpSolrServer.java:302)
+        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:210)
+        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:206)
+        at org.apache.solr.client.solrj.request.AbstractUpdateRequest.process(AbstractUpdateRequest.java:124)
+        at org.apache.solr.client.solrj.SolrServer.add(SolrServer.java:68)
+        at org.apache.solr.client.solrj.SolrServer.add(SolrServer.java:54)
+        at org.dspace.util.SolrUpgradePre6xStatistics.batchUpdateStats(SolrUpgradePre6xStatistics.java:161)
+        at org.dspace.util.SolrUpgradePre6xStatistics.run(SolrUpgradePre6xStatistics.java:456)
+        at org.dspace.util.SolrUpgradePre6xStatistics.main(SolrUpgradePre6xStatistics.java:365)
+        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
+        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
+        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
+        at java.lang.reflect.Method.invoke(Method.java:498)
+        at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229)
+        at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81)
+
+
Exception: Error while creating field 'p_group_id{type=uuid,properties=indexed,stored,multiValued}' from value '10'
+org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Error while creating field 'p_group_id{type=uuid,properties=indexed,stored,multiValued}' from value '10'
+        at org.apache.solr.client.solrj.impl.HttpSolrServer.executeMethod(HttpSolrServer.java:552)
+        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:210)
+        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:206)
+        at org.apache.solr.client.solrj.request.AbstractUpdateRequest.process(AbstractUpdateRequest.java:124)
+        at org.apache.solr.client.solrj.SolrServer.add(SolrServer.java:68)
+        at org.apache.solr.client.solrj.SolrServer.add(SolrServer.java:54)
+        at org.dspace.util.SolrUpgradePre6xStatistics.batchUpdateStats(SolrUpgradePre6xStatistics.java:161)
+        at org.dspace.util.SolrUpgradePre6xStatistics.run(SolrUpgradePre6xStatistics.java:456)
+        at org.dspace.util.SolrUpgradePre6xStatistics.main(SolrUpgradePre6xStatistics.java:365)
+        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
+        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
+        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
+        at java.lang.reflect.Method.invoke(Method.java:498)
+        at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229)
+        at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81)
+

2020-11-17

+ +

PostgreSQL connections week +PostgreSQL locks week

+ +
$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
+2071
@@ -412,6 +507,8 @@ org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Error whil
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -420,8 +517,6 @@ org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Error whil
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/2020/11/postgres_connections_ALL-week.png b/docs/2020/11/postgres_connections_ALL-week.png new file mode 100644 index 000000000..63f90a4d8 Binary files /dev/null and b/docs/2020/11/postgres_connections_ALL-week.png differ diff --git a/docs/2020/11/postgres_connections_ALL-week2.png b/docs/2020/11/postgres_connections_ALL-week2.png new file mode 100644 index 000000000..7b2bf48a2 Binary files /dev/null and b/docs/2020/11/postgres_connections_ALL-week2.png differ diff --git a/docs/2020/11/postgres_locks_ALL-week.png b/docs/2020/11/postgres_locks_ALL-week.png new file mode 100644 index 000000000..62edfd657 Binary files /dev/null and b/docs/2020/11/postgres_locks_ALL-week.png differ diff --git a/docs/404.html b/docs/404.html index c7e106e26..fa64ba762 100644 --- a/docs/404.html +++ b/docs/404.html @@ -92,6 +92,8 @@
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -100,8 +102,6 @@
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/categories/index.html b/docs/categories/index.html index 4bb1cb0cf..674c6e574 100644 --- a/docs/categories/index.html +++ b/docs/categories/index.html @@ -81,7 +81,7 @@

Notes

-

by Alan Orth

+

by Alan Orth

Read more → @@ -105,6 +105,8 @@
    +
  1. CGSpace DSpace 6 Upgrade
    2. +
  2. November, 2020
  3. October, 2020
    4. @@ -113,8 +115,6 @@
  4. August, 2020
    5. -
  5. July, 2020
    6. -
diff --git a/docs/categories/index.xml b/docs/categories/index.xml index 25fc1292c..c0c5cd490 100644 --- a/docs/categories/index.xml +++ b/docs/categories/index.xml @@ -6,11 +6,11 @@ Recent content in Categories on CGSpace Notes Hugo -- gohugo.io en-us - Sun, 01 Nov 2020 13:11:54 +0200 + Sun, 15 Nov 2020 13:27:35 +0200 Notes https://alanorth.github.io/cgspace-notes/categories/notes/ - Sun, 01 Nov 2020 13:11:54 +0200 + Sun, 15 Nov 2020 13:27:35 +0200 https://alanorth.github.io/cgspace-notes/categories/notes/ diff --git a/docs/categories/notes/index.html b/docs/categories/notes/index.html index b2ae43640..d94839272 100644 --- a/docs/categories/notes/index.html +++ b/docs/categories/notes/index.html @@ -78,6 +78,26 @@ + + + + + + +

November, 2020

@@ -337,34 +357,6 @@ - -
-
-

February, 2020

-

by Alan Orth in - Notes - - -

-
-

2020-02-02

-
    -
  • Continue working on porting CGSpace’s DSpace 5 code to DSpace 6.3 that I started yesterday -
      -
    • Sign up for an account with MaxMind so I can get the GeoLite2-City.mmdb database
      • -
    • I still need to wire up the API credentials and cron job into the Ansible infrastructure playbooks
      • -
    • Fix some minor issues in the config and XMLUI themes, like removing Atmire stuff
      • -
    • The code finally builds and runs with a fresh install
      • -
    -
    • -
- Read more → -
- - - - -