Add notes for 2019-12-17

This commit is contained in:
2019-12-17 14:49:24 +02:00
parent d83c951532
commit d54e5b69f1
90 changed files with 1420 additions and 1377 deletions

View File

@ -14,7 +14,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.60.1" />
<meta name="generator" content="Hugo 0.61.0" />
@ -84,7 +84,7 @@
</p>
</header>
<h2 id="20191201">2019-12-01</h2>
<h2 id="2019-12-01">2019-12-01</h2>
<ul>
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
<ul>
@ -116,7 +116,7 @@
</p>
</header>
<h2 id="20191104">2019-11-04</h2>
<h2 id="2019-11-04">2019-11-04</h2>
<ul>
<li>Peter noticed that there were 5.2 million hits on CGSpace in 2019-10 according to the Atmire usage statistics
<ul>
@ -193,7 +193,7 @@
</p>
</header>
<h2 id="20190901">2019-09-01</h2>
<h2 id="2019-09-01">2019-09-01</h2>
<ul>
<li>Linode emailed to say that CGSpace (linode18) had a high rate of outbound traffic for several hours this morning</li>
<li>Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:</li>
@ -238,11 +238,11 @@
</p>
</header>
<h2 id="20190803">2019-08-03</h2>
<h2 id="2019-08-03">2019-08-03</h2>
<ul>
<li>Look at Bioversity's latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&hellip;</li>
</ul>
<h2 id="20190804">2019-08-04</h2>
<h2 id="2019-08-04">2019-08-04</h2>
<ul>
<li>Deploy ORCID identifier updates requested by Bioversity to CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it
@ -270,7 +270,7 @@
</p>
</header>
<h2 id="20190701">2019-07-01</h2>
<h2 id="2019-07-01">2019-07-01</h2>
<ul>
<li>Create an &ldquo;AfricaRice books and book chapters&rdquo; collection on CGSpace for AfricaRice</li>
<li>Last month Sisay asked why the following &ldquo;most popular&rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
@ -298,12 +298,12 @@
</p>
</header>
<h2 id="20190602">2019-06-02</h2>
<h2 id="2019-06-02">2019-06-02</h2>
<ul>
<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it</li>
</ul>
<h2 id="20190603">2019-06-03</h2>
<h2 id="2019-06-03">2019-06-03</h2>
<ul>
<li>Skype with Marie-Angélique and Abenet about <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2</a></li>
</ul>
@ -324,7 +324,7 @@
</p>
</header>
<h2 id="20190501">2019-05-01</h2>
<h2 id="2019-05-01">2019-05-01</h2>
<ul>
<li>Help CCAFS with regenerating some item thumbnails after they uploaded new PDFs to some items on CGSpace</li>
<li>A user on the dspace-tech mailing list offered some suggestions for troubleshooting the problem with the inability to delete certain items
@ -357,7 +357,7 @@ DELETE 1
</p>
</header>
<h2 id="20190401">2019-04-01</h2>
<h2 id="2019-04-01">2019-04-01</h2>
<ul>
<li>Meeting with AgroKnow to discuss CGSpace, ILRI data, AReS, GARDIAN, etc
<ul>

View File

@ -17,7 +17,7 @@
<pubDate>Sun, 01 Dec 2019 11:22:30 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-12/</guid>
<description>&lt;h2 id=&#34;20191201&#34;&gt;2019-12-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-12-01&#34;&gt;2019-12-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Upgrade CGSpace (linode18) to Ubuntu 18.04:
&lt;ul&gt;
@ -40,7 +40,7 @@
<pubDate>Mon, 04 Nov 2019 12:20:30 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-11/</guid>
<description>&lt;h2 id=&#34;20191104&#34;&gt;2019-11-04&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-11-04&#34;&gt;2019-11-04&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Peter noticed that there were 5.2 million hits on CGSpace in 2019-10 according to the Atmire usage statistics
&lt;ul&gt;
@ -88,7 +88,7 @@
<pubDate>Sun, 01 Sep 2019 10:17:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-09/</guid>
<description>&lt;h2 id=&#34;20190901&#34;&gt;2019-09-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-09-01&#34;&gt;2019-09-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Linode emailed to say that CGSpace (linode18) had a high rate of outbound traffic for several hours this morning&lt;/li&gt;
&lt;li&gt;Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:&lt;/li&gt;
@ -124,11 +124,11 @@
<pubDate>Sat, 03 Aug 2019 12:39:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-08/</guid>
<description>&lt;h2 id=&#34;20190803&#34;&gt;2019-08-03&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-08-03&#34;&gt;2019-08-03&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Look at Bioversity&#39;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;20190804&#34;&gt;2019-08-04&lt;/h2&gt;
&lt;h2 id=&#34;2019-08-04&#34;&gt;2019-08-04&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Deploy ORCID identifier updates requested by Bioversity to CGSpace&lt;/li&gt;
&lt;li&gt;Run system updates on CGSpace (linode18) and reboot it
@ -147,7 +147,7 @@
<pubDate>Mon, 01 Jul 2019 12:13:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-07/</guid>
<description>&lt;h2 id=&#34;20190701&#34;&gt;2019-07-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-07-01&#34;&gt;2019-07-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Create an &amp;ldquo;AfricaRice books and book chapters&amp;rdquo; collection on CGSpace for AfricaRice&lt;/li&gt;
&lt;li&gt;Last month Sisay asked why the following &amp;ldquo;most popular&amp;rdquo; statistics link for a range of months in 2018 works for the CIAT community on DSpace Test, but not on CGSpace:
@ -166,12 +166,12 @@
<pubDate>Sun, 02 Jun 2019 10:57:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-06/</guid>
<description>&lt;h2 id=&#34;20190602&#34;&gt;2019-06-02&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-06-02&#34;&gt;2019-06-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Merge the &lt;a href=&#34;https://github.com/ilri/DSpace/pull/425&#34;&gt;Solr filterCache&lt;/a&gt; and &lt;a href=&#34;https://github.com/ilri/DSpace/pull/426&#34;&gt;XMLUI ISI journal&lt;/a&gt; changes to the &lt;code&gt;5_x-prod&lt;/code&gt; branch and deploy on CGSpace&lt;/li&gt;
&lt;li&gt;Run system updates on CGSpace (linode18) and reboot it&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;20190603&#34;&gt;2019-06-03&lt;/h2&gt;
&lt;h2 id=&#34;2019-06-03&#34;&gt;2019-06-03&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Skype with Marie-Angélique and Abenet about &lt;a href=&#34;https://agriculturalsemantics.github.io/cg-core/cgcore.html&#34;&gt;CG Core v2&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;</description>
@ -183,7 +183,7 @@
<pubDate>Wed, 01 May 2019 07:37:43 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-05/</guid>
<description>&lt;h2 id=&#34;20190501&#34;&gt;2019-05-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-05-01&#34;&gt;2019-05-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Help CCAFS with regenerating some item thumbnails after they uploaded new PDFs to some items on CGSpace&lt;/li&gt;
&lt;li&gt;A user on the dspace-tech mailing list offered some suggestions for troubleshooting the problem with the inability to delete certain items
@ -207,7 +207,7 @@ DELETE 1
<pubDate>Mon, 01 Apr 2019 09:00:43 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-04/</guid>
<description>&lt;h2 id=&#34;20190401&#34;&gt;2019-04-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-04-01&#34;&gt;2019-04-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Meeting with AgroKnow to discuss CGSpace, ILRI data, AReS, GARDIAN, etc
&lt;ul&gt;
@ -239,7 +239,7 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
<pubDate>Fri, 01 Mar 2019 12:16:30 +0100</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-03/</guid>
<description>&lt;h2 id=&#34;20190301&#34;&gt;2019-03-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-03-01&#34;&gt;2019-03-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I checked IITA&#39;s 259 Feb 14 records from last month for duplicates using Atmire&#39;s Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good&lt;/li&gt;
&lt;li&gt;I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc&amp;hellip;&lt;/li&gt;
@ -262,7 +262,7 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
<pubDate>Fri, 01 Feb 2019 21:37:30 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-02/</guid>
<description>&lt;h2 id=&#34;20190201&#34;&gt;2019-02-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-02-01&#34;&gt;2019-02-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Linode has alerted a few times since last night that the CPU usage on CGSpace (linode18) was high despite me increasing the alert threshold last week from 250% to 275%—I might need to increase it again!&lt;/li&gt;
&lt;li&gt;The top IPs before, during, and after this latest alert tonight were:&lt;/li&gt;
@ -298,7 +298,7 @@ sys 0m1.979s
<pubDate>Wed, 02 Jan 2019 09:48:30 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-01/</guid>
<description>&lt;h2 id=&#34;20190102&#34;&gt;2019-01-02&lt;/h2&gt;
<description>&lt;h2 id=&#34;2019-01-02&#34;&gt;2019-01-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Linode alerted that CGSpace (linode18) had a higher outbound traffic rate than normal early this morning&lt;/li&gt;
&lt;li&gt;I don&#39;t see anything interesting in the web server logs around that time though:&lt;/li&gt;
@ -323,13 +323,13 @@ sys 0m1.979s
<pubDate>Sun, 02 Dec 2018 02:09:30 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-12/</guid>
<description>&lt;h2 id=&#34;20181201&#34;&gt;2018-12-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-12-01&#34;&gt;2018-12-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK&lt;/li&gt;
&lt;li&gt;I manually installed OpenJDK, then removed Oracle JDK, then re-ran the &lt;a href=&#34;http://github.com/ilri/rmg-ansible-public&#34;&gt;Ansible playbook&lt;/a&gt; to update all configuration files, etc&lt;/li&gt;
&lt;li&gt;Then I ran all system updates and restarted the server&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;20181202&#34;&gt;2018-12-02&lt;/h2&gt;
&lt;h2 id=&#34;2018-12-02&#34;&gt;2018-12-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another &lt;a href=&#34;https://usn.ubuntu.com/3831-1/&#34;&gt;Ghostscript vulnerability last week&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;</description>
@ -341,12 +341,12 @@ sys 0m1.979s
<pubDate>Thu, 01 Nov 2018 16:41:30 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-11/</guid>
<description>&lt;h2 id=&#34;20181101&#34;&gt;2018-11-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-11-01&#34;&gt;2018-11-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Finalize AReS Phase I and Phase II ToRs&lt;/li&gt;
&lt;li&gt;Send a note about my &lt;a href=&#34;https://github.com/ilri/dspace-statistics-api&#34;&gt;dspace-statistics-api&lt;/a&gt; to the dspace-tech mailing list&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;20181103&#34;&gt;2018-11-03&lt;/h2&gt;
&lt;h2 id=&#34;2018-11-03&#34;&gt;2018-11-03&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage&lt;/li&gt;
&lt;li&gt;Today these are the top 10 IPs:&lt;/li&gt;
@ -359,7 +359,7 @@ sys 0m1.979s
<pubDate>Mon, 01 Oct 2018 22:31:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-10/</guid>
<description>&lt;h2 id=&#34;20181001&#34;&gt;2018-10-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-10-01&#34;&gt;2018-10-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items&lt;/li&gt;
&lt;li&gt;I created a GitHub issue to track this &lt;a href=&#34;https://github.com/ilri/DSpace/issues/389&#34;&gt;#389&lt;/a&gt;, because I&#39;m super busy in Nairobi right now&lt;/li&gt;
@ -372,7 +372,7 @@ sys 0m1.979s
<pubDate>Sun, 02 Sep 2018 09:55:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-09/</guid>
<description>&lt;h2 id=&#34;20180902&#34;&gt;2018-09-02&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-09-02&#34;&gt;2018-09-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;New &lt;a href=&#34;https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5&#34;&gt;PostgreSQL JDBC driver version 42.2.5&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;I&#39;ll update the DSpace role in our &lt;a href=&#34;https://github.com/ilri/rmg-ansible-public&#34;&gt;Ansible infrastructure playbooks&lt;/a&gt; and run the updated playbooks on CGSpace and DSpace Test&lt;/li&gt;
@ -387,7 +387,7 @@ sys 0m1.979s
<pubDate>Wed, 01 Aug 2018 11:52:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-08/</guid>
<description>&lt;h2 id=&#34;20180801&#34;&gt;2018-08-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-08-01&#34;&gt;2018-08-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;DSpace Test had crashed at some point yesterday morning and I see the following in &lt;code&gt;dmesg&lt;/code&gt;:&lt;/li&gt;
&lt;/ul&gt;
@ -410,7 +410,7 @@ sys 0m1.979s
<pubDate>Sun, 01 Jul 2018 12:56:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-07/</guid>
<description>&lt;h2 id=&#34;20180701&#34;&gt;2018-07-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-07-01&#34;&gt;2018-07-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:&lt;/li&gt;
&lt;/ul&gt;
@ -428,7 +428,7 @@ sys 0m1.979s
<pubDate>Mon, 04 Jun 2018 19:49:54 -0700</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-06/</guid>
<description>&lt;h2 id=&#34;20180604&#34;&gt;2018-06-04&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-06-04&#34;&gt;2018-06-04&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Test the &lt;a href=&#34;https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560&#34;&gt;DSpace 5.8 module upgrades from Atmire&lt;/a&gt; (&lt;a href=&#34;https://github.com/ilri/DSpace/pull/378&#34;&gt;#378&lt;/a&gt;)
&lt;ul&gt;
@ -457,7 +457,7 @@ sys 2m7.289s
<pubDate>Tue, 01 May 2018 16:43:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-05/</guid>
<description>&lt;h2 id=&#34;20180501&#34;&gt;2018-05-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-05-01&#34;&gt;2018-05-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
&lt;ul&gt;
@ -476,7 +476,7 @@ sys 2m7.289s
<pubDate>Sun, 01 Apr 2018 16:13:54 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-04/</guid>
<description>&lt;h2 id=&#34;20180401&#34;&gt;2018-04-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-04-01&#34;&gt;2018-04-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I tried to test something on DSpace Test but noticed that it&#39;s down since god knows when&lt;/li&gt;
&lt;li&gt;Catalina logs at least show some memory errors yesterday:&lt;/li&gt;
@ -489,7 +489,7 @@ sys 2m7.289s
<pubDate>Fri, 02 Mar 2018 16:07:54 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-03/</guid>
<description>&lt;h2 id=&#34;20180302&#34;&gt;2018-03-02&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-03-02&#34;&gt;2018-03-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Export a CSV of the IITA community metadata for Martin Mueller&lt;/li&gt;
&lt;/ul&gt;</description>
@ -501,7 +501,7 @@ sys 2m7.289s
<pubDate>Thu, 01 Feb 2018 16:28:54 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-02/</guid>
<description>&lt;h2 id=&#34;20180201&#34;&gt;2018-02-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-02-01&#34;&gt;2018-02-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Peter gave feedback on the &lt;code&gt;dc.rights&lt;/code&gt; proof of concept that I had sent him last week&lt;/li&gt;
&lt;li&gt;We don&#39;t need to distinguish between internal and external works, so that makes it just a simple list&lt;/li&gt;
@ -516,7 +516,7 @@ sys 2m7.289s
<pubDate>Tue, 02 Jan 2018 08:35:54 -0800</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2018-01/</guid>
<description>&lt;h2 id=&#34;20180102&#34;&gt;2018-01-02&lt;/h2&gt;
<description>&lt;h2 id=&#34;2018-01-02&#34;&gt;2018-01-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time&lt;/li&gt;
&lt;li&gt;I didn&#39;t get any load alerts from Linode and the REST and XMLUI logs don&#39;t show anything out of the ordinary&lt;/li&gt;
@ -591,7 +591,7 @@ dspace.log.2018-01-02:34
<pubDate>Fri, 01 Dec 2017 13:53:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2017-12/</guid>
<description>&lt;h2 id=&#34;20171201&#34;&gt;2017-12-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2017-12-01&#34;&gt;2017-12-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Uptime Robot noticed that CGSpace went down&lt;/li&gt;
&lt;li&gt;The logs say &amp;ldquo;Timeout waiting for idle object&amp;rdquo;&lt;/li&gt;
@ -606,11 +606,11 @@ dspace.log.2018-01-02:34
<pubDate>Thu, 02 Nov 2017 09:37:54 +0200</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2017-11/</guid>
<description>&lt;h2 id=&#34;20171101&#34;&gt;2017-11-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2017-11-01&#34;&gt;2017-11-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;The CORE developers responded to say they are looking into their bot not respecting our robots.txt&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;20171102&#34;&gt;2017-11-02&lt;/h2&gt;
&lt;h2 id=&#34;2017-11-02&#34;&gt;2017-11-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Today there have been no hits by CORE and no alerts from Linode (coincidence?)&lt;/li&gt;
&lt;/ul&gt;
@ -630,7 +630,7 @@ COPY 54701
<pubDate>Sun, 01 Oct 2017 08:07:54 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2017-10/</guid>
<description>&lt;h2 id=&#34;20171001&#34;&gt;2017-10-01&lt;/h2&gt;
<description>&lt;h2 id=&#34;2017-10-01&#34;&gt;2017-10-01&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Peter emailed to point out that many items in the &lt;a href=&#34;https://cgspace.cgiar.org/handle/10568/2703&#34;&gt;ILRI archive collection&lt;/a&gt; have multiple handles:&lt;/li&gt;
&lt;/ul&gt;

View File

@ -14,7 +14,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.60.1" />
<meta name="generator" content="Hugo 0.61.0" />
@ -84,7 +84,7 @@
</p>
</header>
<h2 id="20190301">2019-03-01</h2>
<h2 id="2019-03-01">2019-03-01</h2>
<ul>
<li>I checked IITA's 259 Feb 14 records from last month for duplicates using Atmire's Duplicate Checker on a fresh snapshot of CGSpace on my local machine and everything looks good</li>
<li>I am now only waiting to hear from her about where the items should go, though I assume Journal Articles go to IITA Journal Articles collection, etc&hellip;</li>
@ -116,7 +116,7 @@
</p>
</header>
<h2 id="20190201">2019-02-01</h2>
<h2 id="2019-02-01">2019-02-01</h2>
<ul>
<li>Linode has alerted a few times since last night that the CPU usage on CGSpace (linode18) was high despite me increasing the alert threshold last week from 250% to 275%—I might need to increase it again!</li>
<li>The top IPs before, during, and after this latest alert tonight were:</li>
@ -161,7 +161,7 @@ sys 0m1.979s
</p>
</header>
<h2 id="20190102">2019-01-02</h2>
<h2 id="2019-01-02">2019-01-02</h2>
<ul>
<li>Linode alerted that CGSpace (linode18) had a higher outbound traffic rate than normal early this morning</li>
<li>I don't see anything interesting in the web server logs around that time though:</li>
@ -195,13 +195,13 @@ sys 0m1.979s
</p>
</header>
<h2 id="20181201">2018-12-01</h2>
<h2 id="2018-12-01">2018-12-01</h2>
<ul>
<li>Switch CGSpace (linode18) to use OpenJDK instead of Oracle JDK</li>
<li>I manually installed OpenJDK, then removed Oracle JDK, then re-ran the <a href="http://github.com/ilri/rmg-ansible-public">Ansible playbook</a> to update all configuration files, etc</li>
<li>Then I ran all system updates and restarted the server</li>
</ul>
<h2 id="20181202">2018-12-02</h2>
<h2 id="2018-12-02">2018-12-02</h2>
<ul>
<li>I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another <a href="https://usn.ubuntu.com/3831-1/">Ghostscript vulnerability last week</a></li>
</ul>
@ -222,12 +222,12 @@ sys 0m1.979s
</p>
</header>
<h2 id="20181101">2018-11-01</h2>
<h2 id="2018-11-01">2018-11-01</h2>
<ul>
<li>Finalize AReS Phase I and Phase II ToRs</li>
<li>Send a note about my <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> to the dspace-tech mailing list</li>
</ul>
<h2 id="20181103">2018-11-03</h2>
<h2 id="2018-11-03">2018-11-03</h2>
<ul>
<li>Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage</li>
<li>Today these are the top 10 IPs:</li>
@ -249,7 +249,7 @@ sys 0m1.979s
</p>
</header>
<h2 id="20181001">2018-10-01</h2>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I'm super busy in Nairobi right now</li>
@ -271,7 +271,7 @@ sys 0m1.979s
</p>
</header>
<h2 id="20180902">2018-09-02</h2>
<h2 id="2018-09-02">2018-09-02</h2>
<ul>
<li>New <a href="https://jdbc.postgresql.org/documentation/changelog.html#version_42.2.5">PostgreSQL JDBC driver version 42.2.5</a></li>
<li>I'll update the DSpace role in our <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> and run the updated playbooks on CGSpace and DSpace Test</li>
@ -295,7 +295,7 @@ sys 0m1.979s
</p>
</header>
<h2 id="20180801">2018-08-01</h2>
<h2 id="2018-08-01">2018-08-01</h2>
<ul>
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
</ul>
@ -327,7 +327,7 @@ sys 0m1.979s
</p>
</header>
<h2 id="20180701">2018-07-01</h2>
<h2 id="2018-07-01">2018-07-01</h2>
<ul>
<li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
</ul>
@ -354,7 +354,7 @@ sys 0m1.979s
</p>
</header>
<h2 id="20180604">2018-06-04</h2>
<h2 id="2018-06-04">2018-06-04</h2>
<ul>
<li>Test the <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560">DSpace 5.8 module upgrades from Atmire</a> (<a href="https://github.com/ilri/DSpace/pull/378">#378</a>)
<ul>

View File

@ -14,7 +14,7 @@
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.60.1" />
<meta name="generator" content="Hugo 0.61.0" />
@ -84,7 +84,7 @@
</p>
</header>
<h2 id="20180501">2018-05-01</h2>
<h2 id="2018-05-01">2018-05-01</h2>
<ul>
<li>I cleared the Solr statistics core on DSpace Test by issuing two commands directly to the Solr admin interface:
<ul>
@ -112,7 +112,7 @@
</p>
</header>
<h2 id="20180401">2018-04-01</h2>
<h2 id="2018-04-01">2018-04-01</h2>
<ul>
<li>I tried to test something on DSpace Test but noticed that it's down since god knows when</li>
<li>Catalina logs at least show some memory errors yesterday:</li>
@ -134,7 +134,7 @@
</p>
</header>
<h2 id="20180302">2018-03-02</h2>
<h2 id="2018-03-02">2018-03-02</h2>
<ul>
<li>Export a CSV of the IITA community metadata for Martin Mueller</li>
</ul>
@ -155,7 +155,7 @@
</p>
</header>
<h2 id="20180201">2018-02-01</h2>
<h2 id="2018-02-01">2018-02-01</h2>
<ul>
<li>Peter gave feedback on the <code>dc.rights</code> proof of concept that I had sent him last week</li>
<li>We don't need to distinguish between internal and external works, so that makes it just a simple list</li>
@ -179,7 +179,7 @@
</p>
</header>
<h2 id="20180102">2018-01-02</h2>
<h2 id="2018-01-02">2018-01-02</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down and up a few times last night, for a few minutes each time</li>
<li>I didn't get any load alerts from Linode and the REST and XMLUI logs don't show anything out of the ordinary</li>
@ -263,7 +263,7 @@ dspace.log.2018-01-02:34
</p>
</header>
<h2 id="20171201">2017-12-01</h2>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
@ -287,11 +287,11 @@ dspace.log.2018-01-02:34
</p>
</header>
<h2 id="20171101">2017-11-01</h2>
<h2 id="2017-11-01">2017-11-01</h2>
<ul>
<li>The CORE developers responded to say they are looking into their bot not respecting our robots.txt</li>
</ul>
<h2 id="20171102">2017-11-02</h2>
<h2 id="2017-11-02">2017-11-02</h2>
<ul>
<li>Today there have been no hits by CORE and no alerts from Linode (coincidence?)</li>
</ul>
@ -320,7 +320,7 @@ COPY 54701
</p>
</header>
<h2 id="20171001">2017-10-01</h2>
<h2 id="2017-10-01">2017-10-01</h2>
<ul>
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
</ul>