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Add notes for 2019-12-17
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@ -55,7 +55,7 @@ real 74m42.646s
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user 8m5.056s
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sys 2m7.289s
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"/>
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<meta name="generator" content="Hugo 0.60.1" />
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<meta name="generator" content="Hugo 0.61.0" />
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@ -136,7 +136,7 @@ sys 2m7.289s
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</p>
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</header>
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<h2 id="20180604">2018-06-04</h2>
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<h2 id="2018-06-04">2018-06-04</h2>
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<ul>
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<li>Test the <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560">DSpace 5.8 module upgrades from Atmire</a> (<a href="https://github.com/ilri/DSpace/pull/378">#378</a>)
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<ul>
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@ -156,13 +156,13 @@ sys 2m7.289s
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real 74m42.646s
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user 8m5.056s
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sys 2m7.289s
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</code></pre><h2 id="20180606">2018-06-06</h2>
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</code></pre><h2 id="2018-06-06">2018-06-06</h2>
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<ul>
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<li>It turns out that I needed to add a server block for <code>atmire.com-snapshots</code> to my Maven settings, so now the Atmire code builds</li>
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<li>Now Maven and Ant run properly, but I'm getting SQL migration errors in <code>dspace.log</code> after starting Tomcat</li>
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<li>I've updated my ticket on Atmire's bug tracker: <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560">https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560</a></li>
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</ul>
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<h2 id="20180607">2018-06-07</h2>
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<h2 id="2018-06-07">2018-06-07</h2>
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<ul>
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<li>Proofing 200 IITA records on DSpace Test for Sisay: <a href="https://dspacetest.cgiar.org/handle/10568/95391">IITA_Junel_06 (10568/95391)</a>
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<ul>
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@ -201,13 +201,13 @@ update schema_version set version = '5.8.2015.12.03.3' where version = '5.5.2015
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</code></pre><ul>
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<li>I will apply them on CGSpace tomorrow I think…</li>
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</ul>
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<h2 id="20180609">2018-06-09</h2>
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<h2 id="2018-06-09">2018-06-09</h2>
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<ul>
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<li>It's pretty annoying, but the JVM monitoring for Munin was never set up when I migrated DSpace Test to its new server a few months ago</li>
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<li>I ran the tomcat and munin-node tags in Ansible again and now the stuff is all wired up and recording stats properly</li>
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<li>I applied the CIP author corrections on CGSpace and DSpace Test and re-ran the Discovery indexing</li>
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</ul>
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<h2 id="20180610">2018-06-10</h2>
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<h2 id="2018-06-10">2018-06-10</h2>
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<ul>
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<li>I spent some time removing the Atmire Metadata Quality Module (MQM) from the proposed DSpace 5.8 changes</li>
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<li>After removing all code mentioning MQM, mqm, metadata-quality, batchedit, duplicatechecker, etc, I think I got most of it removed, but there is a Spring error during Tomcat startup:</li>
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@ -237,7 +237,7 @@ Failed to startup the DSpace Service Manager: failure starting up spring service
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</li>
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<li>I will have to tell IITA people to redo these entirely I think…</li>
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</ul>
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<h2 id="20180611">2018-06-11</h2>
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<h2 id="2018-06-11">2018-06-11</h2>
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<ul>
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<li>Sisay sent a new version of the last IITA records that he created from the original CSV from IITA</li>
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<li>The 200 records are in the <a href="https://dspacetest.cgiar.org/handle/10568/95870">IITA_Junel_11 (10568/95870)</a> collection</li>
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@ -265,7 +265,7 @@ Failed to startup the DSpace Service Manager: failure starting up spring service
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<li>I always use the built-in trim and collapse transformations anyways, but this seems to work to find the offending cells: <code>isNotNull(value.match(/.*?\s{2,}.*?/))</code></li>
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<li>I wonder if I should start checking for “smart” quotes like ’ (hex 2019)</li>
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</ul>
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<h2 id="20180612">2018-06-12</h2>
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<h2 id="2018-06-12">2018-06-12</h2>
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<ul>
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<li>Udana from IWMI asked about the OAI base URL for their community on CGSpace</li>
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<li>I think it should be this: <a href="https://cgspace.cgiar.org/oai/request?verb=ListRecords&metadataPrefix=oai_dc&set=com_10568_16814">https://cgspace.cgiar.org/oai/request?verb=ListRecords&metadataPrefix=oai_dc&set=com_10568_16814</a></li>
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@ -341,7 +341,7 @@ Failed to startup the DSpace Service Manager: failure starting up spring service
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</ul>
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</li>
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</ul>
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<h2 id="20180613">2018-06-13</h2>
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<h2 id="2018-06-13">2018-06-13</h2>
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<ul>
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<li>Elizabeth from CIAT contacted me to ask if I could add ORCID identifiers to all of Robin Buruchara's items</li>
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<li>I used my <a href="https://gist.githubusercontent.com/alanorth/a49d85cd9c5dea89cddbe809813a7050/raw/f67b6e45a9a940732882ae4bb26897a9b245ef31/add-orcid-identifiers-csv.py">add-orcid-identifiers-csv.py</a> script:</li>
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@ -365,14 +365,14 @@ Error: ERROR: update or delete on table "bitstream" violates foreign k
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</ul>
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<pre><code>$ psql dspace -c 'update bundle set primary_bitstream_id=NULL where primary_bitstream_id in (152402);'
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UPDATE 1
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</code></pre><h2 id="20180614">2018-06-14</h2>
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</code></pre><h2 id="2018-06-14">2018-06-14</h2>
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<ul>
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<li>Check through Udana's IWMI records from last week on DSpace Test</li>
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<li>There were only some minor whitespace and one or two syntax errors, but they look very good otherwise</li>
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<li>I uploaded the twenty-four reports to the IWMI Reports collection: <a href="https://cgspace.cgiar.org/handle/10568/36188">https://cgspace.cgiar.org/handle/10568/36188</a></li>
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<li>I uploaded the seventy-six book chapters to the IWMI Book Chapters collection: <a href="https://cgspace.cgiar.org/handle/10568/36178">https://cgspace.cgiar.org/handle/10568/36178</a></li>
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</ul>
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<h2 id="20180624">2018-06-24</h2>
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<h2 id="2018-06-24">2018-06-24</h2>
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<ul>
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<li>I was restoring a PostgreSQL dump on my test machine and found a way to restore the CGSpace dump as the <code>postgres</code> user, but have the owner of the schema be the <code>dspacetest</code> user:</li>
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</ul>
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@ -427,7 +427,7 @@ Done.
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"Jarvis, A.",Andy Jarvis: 0000-0001-6543-0798
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"Jarvis, Andy",Andy Jarvis: 0000-0001-6543-0798
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"Jarvis, Andrew",Andy Jarvis: 0000-0001-6543-0798
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</code></pre><h2 id="20180626">2018-06-26</h2>
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</code></pre><h2 id="2018-06-26">2018-06-26</h2>
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<ul>
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<li>Atmire got back to me to say that we can remove the <code>itemCollectionPlugin</code> and <code>HasBitstreamsSSIPlugin</code> beans from DSpace's <code>discovery.xml</code> file, as they are used by the Metadata Quality Module (MQM) that we are not using anymore</li>
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<li>I removed both those beans and did some simple tests to check item submission, media-filter of PDFs, REST API, but got an error “No matches for the query” when listing records in OAI</li>
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@ -438,7 +438,7 @@ Done.
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<li>It's actually only a warning and it also appears in the logs on DSpace Test (which is currently running DSpace 5.5), so I need to keep troubleshooting</li>
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<li>Ah, I think I just need to run <code>dspace oai import</code></li>
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</ul>
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<h2 id="20180627">2018-06-27</h2>
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<h2 id="2018-06-27">2018-06-27</h2>
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<ul>
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<li>Vika from CIFOR sent back his annotations on the duplicates for the “CIFOR_May_9” archive import that I sent him last week</li>
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<li>I'll have to figure out how to separate those we're keeping, deleting, and mapping into CIFOR's archive collection</li>
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@ -471,7 +471,7 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
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<li>After deleting the 62 duplicates, mapping the 50 items from elsewhere in CGSpace, and uploading 2,398 unique items, there are a total of 2,448 items added in this batch</li>
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<li>I'll let Abenet take one last look and then move them to CGSpace</li>
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</ul>
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<h2 id="20180628">2018-06-28</h2>
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<h2 id="2018-06-28">2018-06-28</h2>
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<ul>
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<li>DSpace Test appears to have crashed last night</li>
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<li>There is nothing in the Tomcat or DSpace logs, but I see the following in <code>dmesg -T</code>:</li>
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