mirror of
https://github.com/alanorth/cgspace-notes.git
synced 2025-01-27 05:49:12 +01:00
Add notes for 2019-12-17
This commit is contained in:
@ -23,7 +23,7 @@ Catalina logs at least show some memory errors yesterday:
|
||||
I tried to test something on DSpace Test but noticed that it's down since god knows when
|
||||
Catalina logs at least show some memory errors yesterday:
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.60.1" />
|
||||
<meta name="generator" content="Hugo 0.61.0" />
|
||||
|
||||
|
||||
|
||||
@ -104,7 +104,7 @@ Catalina logs at least show some memory errors yesterday:
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="20180401">2018-04-01</h2>
|
||||
<h2 id="2018-04-01">2018-04-01</h2>
|
||||
<ul>
|
||||
<li>I tried to test something on DSpace Test but noticed that it's down since god knows when</li>
|
||||
<li>Catalina logs at least show some memory errors yesterday:</li>
|
||||
@ -121,7 +121,7 @@ Exception in thread "ContainerBackgroundProcessor[StandardEngine[Catalina]]
|
||||
<li>I posted a message on Yammer to ask if people are using the Duplicate Check step from the Metadata Quality Module</li>
|
||||
<li>Help Lili Szilagyi with a question about statistics on some CCAFS items</li>
|
||||
</ul>
|
||||
<h2 id="20180404">2018-04-04</h2>
|
||||
<h2 id="2018-04-04">2018-04-04</h2>
|
||||
<ul>
|
||||
<li>Peter noticed that there were still some old CRP names on CGSpace, because I hadn't forced the Discovery index to be updated after I fixed the others last week</li>
|
||||
<li>For completeness I re-ran the CRP corrections on CGSpace:</li>
|
||||
@ -168,7 +168,7 @@ $ git rebase -i dspace-5.8
|
||||
<li>I need to send this branch to Atmire and also arrange payment (see <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560">ticket #560</a> in their tracker)</li>
|
||||
<li>Fix Sisay's SSH access to the new DSpace Test server (linode19)</li>
|
||||
</ul>
|
||||
<h2 id="20180405">2018-04-05</h2>
|
||||
<h2 id="2018-04-05">2018-04-05</h2>
|
||||
<ul>
|
||||
<li>Fix Sisay's sudo access on the new DSpace Test server (linode19)</li>
|
||||
<li>The reindexing process on DSpace Test took <em>forever</em> yesterday:</li>
|
||||
@ -192,7 +192,7 @@ sys 2m52.585s
|
||||
<li>Proof some records on DSpace Test for Udana from IWMI</li>
|
||||
<li>He has done better with the small syntax and consistency issues but then there are larger concerns with not linking to DOIs, copying titles incorrectly, etc</li>
|
||||
</ul>
|
||||
<h2 id="20180410">2018-04-10</h2>
|
||||
<h2 id="2018-04-10">2018-04-10</h2>
|
||||
<ul>
|
||||
<li>I got a notice that CGSpace CPU usage was very high this morning</li>
|
||||
<li>Looking at the nginx logs, here are the top users today so far:</li>
|
||||
@ -344,7 +344,7 @@ UPDATE 1
|
||||
<li>I told Udana to fix the citation and abstract of the one item, and to correct the <code>dc.language.iso</code> for the five Spanish items in his Book Chapters collection</li>
|
||||
<li>Then we can import the records to CGSpace</li>
|
||||
</ul>
|
||||
<h2 id="20180411">2018-04-11</h2>
|
||||
<h2 id="2018-04-11">2018-04-11</h2>
|
||||
<ul>
|
||||
<li>DSpace Test (linode19) crashed again some time since yesterday:</li>
|
||||
</ul>
|
||||
@ -353,16 +353,16 @@ UPDATE 1
|
||||
</code></pre><ul>
|
||||
<li>I ran all system updates and rebooted the server</li>
|
||||
</ul>
|
||||
<h2 id="20180412">2018-04-12</h2>
|
||||
<h2 id="2018-04-12">2018-04-12</h2>
|
||||
<ul>
|
||||
<li>I caught wind of an interesting XMLUI performance optimization coming in DSpace 6.3: <a href="https://jira.duraspace.org/browse/DS-3883">https://jira.duraspace.org/browse/DS-3883</a></li>
|
||||
<li>I asked for it to be ported to DSpace 5.x</li>
|
||||
</ul>
|
||||
<h2 id="20180413">2018-04-13</h2>
|
||||
<h2 id="2018-04-13">2018-04-13</h2>
|
||||
<ul>
|
||||
<li>Add <code>PII-LAM_CSAGender</code> to CCAFS Phase II project tags in <code>input-forms.xml</code></li>
|
||||
</ul>
|
||||
<h2 id="20180415">2018-04-15</h2>
|
||||
<h2 id="2018-04-15">2018-04-15</h2>
|
||||
<ul>
|
||||
<li>While testing an XMLUI patch for <a href="https://jira.duraspace.org/browse/DS-3883">DS-3883</a> I noticed that there is still some remaining Authority / Solr configuration left that we need to remove:</li>
|
||||
</ul>
|
||||
@ -385,11 +385,11 @@ Total time: 4 minutes 12 seconds
|
||||
<li>The Linode block storage is much slower than the instance storage</li>
|
||||
<li>I ran all system updates and rebooted DSpace Test (linode19)</li>
|
||||
</ul>
|
||||
<h2 id="20180416">2018-04-16</h2>
|
||||
<h2 id="2018-04-16">2018-04-16</h2>
|
||||
<ul>
|
||||
<li>Communicate with Bioversity about their project to migrate their e-Library (Typo3) and Sci-lit databases to CGSpace</li>
|
||||
</ul>
|
||||
<h2 id="20180418">2018-04-18</h2>
|
||||
<h2 id="2018-04-18">2018-04-18</h2>
|
||||
<ul>
|
||||
<li>IWMI people are asking about building a search query that outputs RSS for their reports</li>
|
||||
<li>They want the same results as this Discovery query: <a href="https://cgspace.cgiar.org/discover?filtertype_1=dateAccessioned&filter_relational_operator_1=contains&filter_1=2018&submit_apply_filter=&query=&scope=10568%2F16814&rpp=100&sort_by=dc.date.issued_dt&order=desc">https://cgspace.cgiar.org/discover?filtertype_1=dateAccessioned&filter_relational_operator_1=contains&filter_1=2018&submit_apply_filter=&query=&scope=10568%2F16814&rpp=100&sort_by=dc.date.issued_dt&order=desc</a></li>
|
||||
@ -422,7 +422,7 @@ webui.itemlist.sort-option.4 = type:dc.type:text
|
||||
<li>I got a list of all the CIP collections manually and use the same query that I used in <a href="/cgspace-notes/2017-08">August, 2017</a>:</li>
|
||||
</ul>
|
||||
<pre><code>dspace#= \copy (select distinct text_value, count(*) from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 AND resource_id IN (select item_id from collection2item where collection_id IN (select resource_id from handle where handle in ('10568/89347', '10568/88229', '10568/53086', '10568/53085', '10568/69069', '10568/53087', '10568/53088', '10568/53089', '10568/53090', '10568/53091', '10568/53092', '10568/70150', '10568/53093', '10568/64874', '10568/53094'))) group by text_value order by count desc) to /tmp/cip-authors.csv with csv;
|
||||
</code></pre><h2 id="20180419">2018-04-19</h2>
|
||||
</code></pre><h2 id="2018-04-19">2018-04-19</h2>
|
||||
<ul>
|
||||
<li>Run updates on DSpace Test (linode19) and reboot the server</li>
|
||||
<li>Also try deploying updated GeoLite database during ant update while re-deploying code:</li>
|
||||
@ -442,7 +442,7 @@ sys 2m2.687s
|
||||
</code></pre><ul>
|
||||
<li>This time is with about 70,000 items in the repository</li>
|
||||
</ul>
|
||||
<h2 id="20180420">2018-04-20</h2>
|
||||
<h2 id="2018-04-20">2018-04-20</h2>
|
||||
<ul>
|
||||
<li>Gabriela from CIP emailed to say that CGSpace was returning a white page, but I haven't seen any emails from UptimeRobot</li>
|
||||
<li>I confirm that it's just giving a white page around 4:16</li>
|
||||
@ -515,7 +515,7 @@ org.apache.tomcat.jdbc.pool.PoolExhaustedException: [localhost-startStop-2] Time
|
||||
</code></pre><ul>
|
||||
<li>Very suspect!</li>
|
||||
</ul>
|
||||
<h2 id="20180424">2018-04-24</h2>
|
||||
<h2 id="2018-04-24">2018-04-24</h2>
|
||||
<ul>
|
||||
<li>Testing my Ansible playbooks with a clean and updated installation of Ubuntu 18.04 and I fixed some issues that I hadn't run into a few weeks ago</li>
|
||||
<li>There seems to be a new issue with Java dependencies, though</li>
|
||||
@ -529,7 +529,7 @@ org.apache.tomcat.jdbc.pool.PoolExhaustedException: [localhost-startStop-2] Time
|
||||
<li>Also, I started porting PostgreSQL 9.6 into the Ansible infrastructure scripts</li>
|
||||
<li>This should be a drop in I believe, though I will definitely test it more locally as well as on DSpace Test once we move to DSpace 5.8 and Ubuntu 18.04 in the coming months</li>
|
||||
</ul>
|
||||
<h2 id="20180425">2018-04-25</h2>
|
||||
<h2 id="2018-04-25">2018-04-25</h2>
|
||||
<ul>
|
||||
<li>Still testing the <a href="https://github.com/ilri/rmg-ansible-public">Ansible infrastructure playbooks</a> for Ubuntu 18.04, Tomcat 8.5, and PostgreSQL 9.6</li>
|
||||
<li>One other new thing I notice is that PostgreSQL 9.6 no longer uses <code>createuser</code> and <code>nocreateuser</code>, as those have actually meant <code>superuser</code> and <code>nosuperuser</code> and have been deprecated for <em>ten years</em></li>
|
||||
@ -556,12 +556,12 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
|
||||
<li>There's a <a href="https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=895866">Debian bug about this from a few weeks ago</a></li>
|
||||
<li>Apparently Tomcat was compiled with Java 9, so doesn't work with Java 8</li>
|
||||
</ul>
|
||||
<h2 id="20180429">2018-04-29</h2>
|
||||
<h2 id="2018-04-29">2018-04-29</h2>
|
||||
<ul>
|
||||
<li>DSpace Test crashed again, looks like memory issues again</li>
|
||||
<li>JVM heap size was last increased to 6144m but the system only has 8GB total so there's not much we can do here other than get a bigger Linode instance or remove the massive Solr Statistics data</li>
|
||||
</ul>
|
||||
<h2 id="20180430">2018-04-30</h2>
|
||||
<h2 id="2018-04-30">2018-04-30</h2>
|
||||
<ul>
|
||||
<li>DSpace Test crashed again</li>
|
||||
<li>I will email the CGSpace team to ask them whether or not we want to commit to having a public test server that accurately mirrors CGSpace (ie, to upgrade to the next largest Linode)</li>
|
||||
|
||||
Reference in New Issue
Block a user