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@ -96,6 +96,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2023-02/">February, 2023</a></h2>
<p class="blog-post-meta"><time datetime="2023-02-01T10:57:36+03:00">Wed Feb 01, 2023</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2023-02-01">2023-02-01</h2>
<ul>
<li>Export CGSpace to cross check the DOI metadata with Crossref
<ul>
<li>I want to try to expand my use of their data to journals, publishers, volumes, issues, etc&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2023-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2023-01/">January, 2023</a></h2>
@ -360,24 +385,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-04/">April, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-04-01T10:53:39+03:00">Fri Apr 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
2022-04-01 I did G1GC tests on DSpace Test (linode26) to compliment the CMS tests I did yesterday The Discovery indexing took this long: real 334m33.625s user 227m51.331s sys 3m43.037s 2022-04-04 Start a full harvest on AReS Help Marianne with submit/approve access on a new collection on CGSpace Go back in Gaia&rsquo;s batch reports to find records that she indicated for replacing on CGSpace (ie, those with better new copies, new versions, etc) Looking at the Solr statistics for 2022-03 on CGSpace I see 54.
<a href='https://alanorth.github.io/cgspace-notes/2022-04/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -402,6 +409,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2023-02/">February, 2023</a></li>
<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
@ -410,8 +419,6 @@
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
<li><a href="/cgspace-notes/2022-09/">September, 2022</a></li>
</ol>
</section>

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<description>Recent content in Posts on CGSpace Notes</description>
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<title>February, 2023</title>
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&lt;ul&gt;
&lt;li&gt;Export CGSpace to cross check the DOI metadata with Crossref
&lt;ul&gt;
&lt;li&gt;I want to try to expand my use of their data to journals, publishers, volumes, issues, etc&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>January, 2023</title>
<link>https://alanorth.github.io/cgspace-notes/2023-01/</link>

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<html lang="en" >
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
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<div class="blog-masthead">
<div class="container">
<nav class="nav blog-nav">
<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
</nav>
</div>
</div>
<header class="blog-header">
<div class="container">
<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>
<div class="container">
<div class="row">
<div class="col-sm-8 blog-main">
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
<p class="blog-post-meta"><time datetime="2015-11-23T17:00:57+03:00">Mon Nov 23, 2015</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2015-11-22">2015-11-22</h2>
<ul>
<li>CGSpace went down</li>
<li>Looks like DSpace exhausted its PostgreSQL connection pool</li>
<li>Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections:</li>
</ul>
<pre tabindex="0"><code>$ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspace
78
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2015-11/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/9/" rel="prev" role="button">Previous page</a>
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</nav>
</div> <!-- /.blog-main -->
<aside class="col-sm-3 ml-auto blog-sidebar">
<section class="sidebar-module">
<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2023-02/">February, 2023</a></li>
<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
<li><a href="/cgspace-notes/2022-11/">November, 2022</a></li>
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
</ol>
</section>
<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
</ol>
</section>
</aside>
</div> <!-- /.row -->
</div> <!-- /.container -->
<footer class="blog-footer">
<p dir="auto">
Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
</p>
<p>
<a href="#">Back to top</a>
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</footer>
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55
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@ -10,14 +10,14 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2023-01-29T18:19:31+03:00" />
<meta property="og:updated_time" content="2023-02-01T10:57:36+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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@ -96,6 +96,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-04/">April, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-04-01T10:53:39+03:00">Fri Apr 01, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
2022-04-01 I did G1GC tests on DSpace Test (linode26) to compliment the CMS tests I did yesterday The Discovery indexing took this long: real 334m33.625s user 227m51.331s sys 3m43.037s 2022-04-04 Start a full harvest on AReS Help Marianne with submit/approve access on a new collection on CGSpace Go back in Gaia&rsquo;s batch reports to find records that she indicated for replacing on CGSpace (ie, those with better new copies, new versions, etc) Looking at the Solr statistics for 2022-03 on CGSpace I see 54.
<a href='https://alanorth.github.io/cgspace-notes/2022-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-03/">March, 2022</a></h2>
@ -338,33 +356,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-06/">June, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-06-01T10:51:07+03:00">Tue Jun 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-06-01">2021-06-01</h2>
<ul>
<li>IWMI notified me that AReS was down with an HTTP 502 error
<ul>
<li>Looking at UptimeRobot I see it has been down for 33 hours, but I never got a notification</li>
<li>I don&rsquo;t see anything in the Elasticsearch container logs, or the systemd journal on the host, but I notice that the <code>angular_nginx</code> container isn&rsquo;t running</li>
<li>I simply started it and AReS was running again:</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-06/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -389,6 +380,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2023-02/">February, 2023</a></li>
<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
@ -397,8 +390,6 @@
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
<li><a href="/cgspace-notes/2022-09/">September, 2022</a></li>
</ol>
</section>

68
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@ -10,14 +10,14 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2023-01-29T18:19:31+03:00" />
<meta property="og:updated_time" content="2023-02-01T10:57:36+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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@ -96,6 +96,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-06/">June, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-06-01T10:51:07+03:00">Tue Jun 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-06-01">2021-06-01</h2>
<ul>
<li>IWMI notified me that AReS was down with an HTTP 502 error
<ul>
<li>Looking at UptimeRobot I see it has been down for 33 hours, but I never got a notification</li>
<li>I don&rsquo;t see anything in the Elasticsearch container logs, or the systemd journal on the host, but I notice that the <code>angular_nginx</code> container isn&rsquo;t running</li>
<li>I simply started it and AReS was running again:</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-06/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-05/">May, 2021</a></h2>
@ -345,37 +372,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-10/">October, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-10-06T16:55:54+03:00">Tue Oct 06, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-10-06">2020-10-06</h2>
<ul>
<li>Add tests for the new <code>/items</code> POST handlers to the DSpace 6.x branch of my <a href="https://github.com/ilri/dspace-statistics-api/tree/v6_x">dspace-statistics-api</a>
<ul>
<li>It took a bit of extra work because I had to learn how to mock the responses for when Solr is not available</li>
<li>Tag and release version 1.3.0 on GitHub: <a href="https://github.com/ilri/dspace-statistics-api/releases/tag/v1.3.0">https://github.com/ilri/dspace-statistics-api/releases/tag/v1.3.0</a></li>
</ul>
</li>
<li>Trying to test the changes Atmire sent last week but I had to re-create my local database from a recent CGSpace dump
<ul>
<li>During the FlywayDB migration I got an error:</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-10/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -400,6 +396,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2023-02/">February, 2023</a></li>
<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
@ -408,8 +406,6 @@
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
<li><a href="/cgspace-notes/2022-09/">September, 2022</a></li>
</ol>
</section>

73
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@ -10,14 +10,14 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2023-01-29T18:19:31+03:00" />
<meta property="og:updated_time" content="2023-02-01T10:57:36+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.109.0">
<meta name="generator" content="Hugo 0.110.0">
@ -31,7 +31,7 @@
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"name": "Alan Orth"
},
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"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
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@ -96,6 +96,37 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-10/">October, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-10-06T16:55:54+03:00">Tue Oct 06, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-10-06">2020-10-06</h2>
<ul>
<li>Add tests for the new <code>/items</code> POST handlers to the DSpace 6.x branch of my <a href="https://github.com/ilri/dspace-statistics-api/tree/v6_x">dspace-statistics-api</a>
<ul>
<li>It took a bit of extra work because I had to learn how to mock the responses for when Solr is not available</li>
<li>Tag and release version 1.3.0 on GitHub: <a href="https://github.com/ilri/dspace-statistics-api/releases/tag/v1.3.0">https://github.com/ilri/dspace-statistics-api/releases/tag/v1.3.0</a></li>
</ul>
</li>
<li>Trying to test the changes Atmire sent last week but I had to re-create my local database from a recent CGSpace dump
<ul>
<li>During the FlywayDB migration I got an error:</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-09/">September, 2020</a></h2>
@ -364,38 +395,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-12/">December, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-12-01T11:22:30+02:00">Sun Dec 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-12-01">2019-12-01</h2>
<ul>
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
<ul>
<li>Check any packages that have residual configs and purge them:</li>
<li><!-- raw HTML omitted --># dpkg -l | grep -E &lsquo;^rc&rsquo; | awk &lsquo;{print $2}&rsquo; | xargs dpkg -P<!-- raw HTML omitted --></li>
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
</ul>
</li>
</ul>
<pre tabindex="0"><code># apt update &amp;&amp; apt full-upgrade
# apt-get autoremove &amp;&amp; apt-get autoclean
# dpkg -C
# reboot
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-12/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
@ -420,6 +419,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2023-02/">February, 2023</a></li>
<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
@ -428,8 +429,6 @@
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
<li><a href="/cgspace-notes/2022-09/">September, 2022</a></li>
</ol>
</section>

87
docs/posts/page/5/index.html
View File

@ -10,14 +10,14 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2023-01-29T18:19:31+03:00" />
<meta property="og:updated_time" content="2023-02-01T10:57:36+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.109.0">
<meta name="generator" content="Hugo 0.110.0">
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2023-01-01T08:44:36+03:00",
"dateModified": "2023-02-01T10:57:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,38 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-12/">December, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-12-01T11:22:30+02:00">Sun Dec 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-12-01">2019-12-01</h2>
<ul>
<li>Upgrade CGSpace (linode18) to Ubuntu 18.04:
<ul>
<li>Check any packages that have residual configs and purge them:</li>
<li><!-- raw HTML omitted --># dpkg -l | grep -E &lsquo;^rc&rsquo; | awk &lsquo;{print $2}&rsquo; | xargs dpkg -P<!-- raw HTML omitted --></li>
<li>Make sure all packages are up to date and the package manager is up to date, then reboot:</li>
</ul>
</li>
</ul>
<pre tabindex="0"><code># apt update &amp;&amp; apt full-upgrade
# apt-get autoremove &amp;&amp; apt-get autoclean
# dpkg -C
# reboot
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-11/">November, 2019</a></h2>
@ -388,51 +420,6 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-02-01T21:37:30+02:00">Fri Feb 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-02-01">2019-02-01</h2>
<ul>
<li>Linode has alerted a few times since last night that the CPU usage on CGSpace (linode18) was high despite me increasing the alert threshold last week from 250% to 275%—I might need to increase it again!</li>
<li>The top IPs before, during, and after this latest alert tonight were:</li>
</ul>
<pre tabindex="0"><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &#34;01/Feb/2019:(17|18|19|20|21)&#34; | awk &#39;{print $1}&#39; | sort | uniq -c | sort -n | tail -n 10
245 207.46.13.5
332 54.70.40.11
385 5.143.231.38
405 207.46.13.173
405 207.46.13.75
1117 66.249.66.219
1121 35.237.175.180
1546 5.9.6.51
2474 45.5.186.2
5490 85.25.237.71
</code></pre><ul>
<li><code>85.25.237.71</code> is the &ldquo;Linguee Bot&rdquo; that I first saw last month</li>
<li>The Solr statistics the past few months have been very high and I was wondering if the web server logs also showed an increase</li>
<li>There were just over 3 million accesses in the nginx logs last month:</li>
</ul>
<pre tabindex="0"><code># time zcat --force /var/log/nginx/* | grep -cE &#34;[0-9]{1,2}/Jan/2019&#34;
3018243
real 0m19.873s
user 0m22.203s
sys 0m1.979s
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/4/" rel="prev" role="button">Previous page</a>
@ -457,6 +444,8 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2023-02/">February, 2023</a></li>
<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
@ -465,8 +454,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
<li><a href="/cgspace-notes/2022-09/">September, 2022</a></li>
</ol>
</section>

77
docs/posts/page/6/index.html
View File

@ -10,14 +10,14 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2023-01-29T18:19:31+03:00" />
<meta property="og:updated_time" content="2023-02-01T10:57:36+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.109.0">
<meta name="generator" content="Hugo 0.110.0">
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2023-01-01T08:44:36+03:00",
"dateModified": "2023-02-01T10:57:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,51 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-02/">February, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-02-01T21:37:30+02:00">Fri Feb 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-02-01">2019-02-01</h2>
<ul>
<li>Linode has alerted a few times since last night that the CPU usage on CGSpace (linode18) was high despite me increasing the alert threshold last week from 250% to 275%—I might need to increase it again!</li>
<li>The top IPs before, during, and after this latest alert tonight were:</li>
</ul>
<pre tabindex="0"><code># zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &#34;01/Feb/2019:(17|18|19|20|21)&#34; | awk &#39;{print $1}&#39; | sort | uniq -c | sort -n | tail -n 10
245 207.46.13.5
332 54.70.40.11
385 5.143.231.38
405 207.46.13.173
405 207.46.13.75
1117 66.249.66.219
1121 35.237.175.180
1546 5.9.6.51
2474 45.5.186.2
5490 85.25.237.71
</code></pre><ul>
<li><code>85.25.237.71</code> is the &ldquo;Linguee Bot&rdquo; that I first saw last month</li>
<li>The Solr statistics the past few months have been very high and I was wondering if the web server logs also showed an increase</li>
<li>There were just over 3 million accesses in the nginx logs last month:</li>
</ul>
<pre tabindex="0"><code># time zcat --force /var/log/nginx/* | grep -cE &#34;[0-9]{1,2}/Jan/2019&#34;
3018243
real 0m19.873s
user 0m22.203s
sys 0m1.979s
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2019-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-01/">January, 2019</a></h2>
@ -354,28 +399,6 @@ sys 2m7.289s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-04-01T16:13:54+02:00">Sun Apr 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-04-01">2018-04-01</h2>
<ul>
<li>I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when</li>
<li>Catalina logs at least show some memory errors yesterday:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-04/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/5/" rel="prev" role="button">Previous page</a>
@ -400,6 +423,8 @@ sys 2m7.289s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2023-02/">February, 2023</a></li>
<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
@ -408,8 +433,6 @@ sys 2m7.289s
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
<li><a href="/cgspace-notes/2022-09/">September, 2022</a></li>
</ol>
</section>

59
docs/posts/page/7/index.html
View File

@ -10,14 +10,14 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2023-01-29T18:19:31+03:00" />
<meta property="og:updated_time" content="2023-02-01T10:57:36+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.109.0">
<meta name="generator" content="Hugo 0.110.0">
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2023-01-01T08:44:36+03:00",
"dateModified": "2023-02-01T10:57:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,28 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-04/">April, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-04-01T16:13:54+02:00">Sun Apr 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-04-01">2018-04-01</h2>
<ul>
<li>I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when</li>
<li>Catalina logs at least show some memory errors yesterday:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-03/">March, 2018</a></h2>
@ -391,33 +413,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-07-01T18:03:52+03:00">Sat Jul 01, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-07-01">2017-07-01</h2>
<ul>
<li>Run system updates and reboot DSpace Test</li>
</ul>
<h2 id="2017-07-04">2017-07-04</h2>
<ul>
<li>Merge changes for WLE Phase II theme rename (<a href="https://github.com/ilri/DSpace/pull/329">#329</a>)</li>
<li>Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace</li>
<li>We can use PostgreSQL&rsquo;s extended output format (<code>-x</code>) plus <code>sed</code> to format the output into quasi XML:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-07/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/6/" rel="prev" role="button">Previous page</a>
@ -442,6 +437,8 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2023-02/">February, 2023</a></li>
<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
@ -450,8 +447,6 @@ COPY 54701
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
<li><a href="/cgspace-notes/2022-09/">September, 2022</a></li>
</ol>
</section>

63
docs/posts/page/8/index.html
View File

@ -10,14 +10,14 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2023-01-29T18:19:31+03:00" />
<meta property="og:updated_time" content="2023-02-01T10:57:36+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.109.0">
<meta name="generator" content="Hugo 0.110.0">
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2023-01-01T08:44:36+03:00",
"dateModified": "2023-02-01T10:57:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-07-01T18:03:52+03:00">Sat Jul 01, 2017</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-07-01">2017-07-01</h2>
<ul>
<li>Run system updates and reboot DSpace Test</li>
</ul>
<h2 id="2017-07-04">2017-07-04</h2>
<ul>
<li>Merge changes for WLE Phase II theme rename (<a href="https://github.com/ilri/DSpace/pull/329">#329</a>)</li>
<li>Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace</li>
<li>We can use PostgreSQL&rsquo;s extended output format (<code>-x</code>) plus <code>sed</code> to format the output into quasi XML:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-06/">June, 2017</a></h2>
@ -337,32 +364,6 @@ DELETE 1
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-09-01T15:53:00+03:00">Thu Sep 01, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-09-01">2016-09-01</h2>
<ul>
<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
<li>Discuss how the migration of CGIAR&rsquo;s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
<li>It looks like we might be able to use OUs now, instead of DCs:</li>
</ul>
<pre tabindex="0"><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &#34;dc=cgiarad,dc=org&#34; -D &#34;admigration1@cgiarad.org&#34; -W &#34;(sAMAccountName=admigration1)&#34;
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2016-09/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/7/" rel="prev" role="button">Previous page</a>
@ -387,6 +388,8 @@ DELETE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2023-02/">February, 2023</a></li>
<li><a href="/cgspace-notes/2023-01/">January, 2023</a></li>
<li><a href="/cgspace-notes/2022-12/">December, 2022</a></li>
@ -395,8 +398,6 @@ DELETE 1
<li><a href="/cgspace-notes/2022-10/">October, 2022</a></li>
<li><a href="/cgspace-notes/2022-09/">September, 2022</a></li>
</ol>
</section>

66
docs/posts/page/9/index.html
View File

@ -10,14 +10,14 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2023-01-29T18:19:31+03:00" />
<meta property="og:updated_time" content="2023-02-01T10:57:36+03:00" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
<meta name="generator" content="Hugo 0.109.0">
<meta name="generator" content="Hugo 0.110.0">
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2023-01-01T08:44:36+03:00",
"dateModified": "2023-02-01T10:57:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,32 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-09/">September, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-09-01T15:53:00+03:00">Thu Sep 01, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-09-01">2016-09-01</h2>
<ul>
<li>Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors</li>
<li>Discuss how the migration of CGIAR&rsquo;s Active Directory to a flat structure will break our LDAP groups in DSpace</li>
<li>We had been using <code>DC=ILRI</code> to determine whether a user was ILRI or not</li>
<li>It looks like we might be able to use OUs now, instead of DCs:</li>
</ul>
<pre tabindex="0"><code>$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &#34;dc=cgiarad,dc=org&#34; -D &#34;admigration1@cgiarad.org&#34; -W &#34;(sAMAccountName=admigration1)&#34;
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2016-09/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-08/">August, 2016</a></h2>
@ -334,37 +360,11 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2015-11/">November, 2015</a></h2>
<p class="blog-post-meta"><time datetime="2015-11-23T17:00:57+03:00">Mon Nov 23, 2015</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2015-11-22">2015-11-22</h2>
<ul>
<li>CGSpace went down</li>
<li>Looks like DSpace exhausted its PostgreSQL connection pool</li>
<li>Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections:</li>
</ul>
<pre tabindex="0"><code>$ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspace
78
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2015-11/'>Read more →</a>
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