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content/posts/2022-05.md
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@ -176,4 +176,41 @@ $ csvgrep -c matched -m false /tmp/2022-05-13-ror.csv | csvcut -c organization >
- Update CGSpace to latest `6_x-prod` branch, which removes a handful of Mirage 2 themes and migrates to Node.js 14 and some newer build deps
- Run all system updates on CGSpace (linode18) and reboot it
## 2022-05-25
- Maria Garruccio sent me a handful of new ORCID identifiers for Alliance staff
- We currently have 1349 unique identifiers and this adds about forty-five new ones (!):
```console
$ grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-identifier.xml | sort | uniq | wc -l
1349
$ cat ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-identifier.xml /tmp/new-abc-orcids.txt | grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort | uniq > /tmp/2022-05-25-combined-orcids.txt
$ wc -l /tmp/2022-05-25-combined-orcids.txt
1395 /tmp/2022-05-25-combined-orcids.txt
```
- After combining and filtering them I resolved their names using my `resolve-orcids.py` script:
```console
$ ./ilri/resolve-orcids.py -i /tmp/2022-05-25-combined-orcids.txt -o /tmp/2022-05-25-combined-orcids-names.txt
```
- There are some names that changed, so I need to run them through the `fix-metadata-values.py` script:
```console
$ cat 2022-05-25-update-orcids.csv
cg.creator.identifier,correct
"Andrea Fongar: 0000-0003-2084-1571","ANDREA CECILIA SANCHEZ BOGADO: 0000-0003-4549-6970"
"Bekele Shiferaw: 0000-0002-3645-320X","Bekele A. Shiferaw: 0000-0002-3645-320X"
"Henry Kpaka: 0000-0002-7480-2933","Henry Musa Kpaka: 0000-0002-7480-2933"
"Josephine Agogbua: 0000-0001-6317-1227","Josephine Udunma Agogbua: 0000-0001-6317-1227"
"Martha Lilia Del Río Duque: 0000-0002-0879-0292","Martha Del Río: 0000-0002-0879-0292"
$ ./ilri/fix-metadata-values.py -i 2022-05-25-update-orcids.csv -db dspace -u dspace -p 'fuuu' -f cg.creator.identifier -m 247 -t correct -d -n
Connected to database.
Would fix 4 occurences of: Andrea Fongar: 0000-0003-2084-1571
Would fix 1 occurences of: Bekele Shiferaw: 0000-0002-3645-320X
Would fix 2 occurences of: Josephine Agogbua: 0000-0001-6317-1227
Would fix 34 occurences of: Martha Lilia Del Río Duque: 0000-0002-0879-0292
```
<!-- vim: set sw=2 ts=2: -->

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@ -35,7 +35,7 @@ I purged 93,974 hits from these IPs using my check-spider-ip-hits.sh script
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-05/" />
<meta property="article:published_time" content="2022-05-04T09:13:39+03:00" />
<meta property="article:modified_time" content="2022-05-24T09:42:54+03:00" />
<meta property="article:modified_time" content="2022-05-24T22:10:47+03:00" />
@ -76,9 +76,9 @@ I purged 93,974 hits from these IPs using my check-spider-ip-hits.sh script
"@type": "BlogPosting",
"headline": "May, 2022",
"url": "https://alanorth.github.io/cgspace-notes/2022-05/",
"wordCount": "1223",
"wordCount": "1423",
"datePublished": "2022-05-04T09:13:39+03:00",
"dateModified": "2022-05-24T09:42:54+03:00",
"dateModified": "2022-05-24T22:10:47+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -341,8 +341,42 @@ I purged 93,974 hits from these IPs using my check-spider-ip-hits.sh script
<h2 id="2022-05-24">2022-05-24</h2>
<ul>
<li>Update CGSpace to latest <code>6_x-prod</code> branch, which removes a handful of Mirage 2 themes and migrates to Node.js 14 and some newer build deps</li>
<li>Run all system updates on CGSpace (linode18) and reboot it</li>
</ul>
<!-- raw HTML omitted -->
<h2 id="2022-05-25">2022-05-25</h2>
<ul>
<li>Maria Garruccio sent me a handful of new ORCID identifiers for Alliance staff
<ul>
<li>We currently have 1349 unique identifiers and this adds about forty-five new ones (!):</li>
</ul>
</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ grep -oE <span style="color:#e6db74">&#39;[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}&#39;</span> ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-identifier.xml | sort | uniq | wc -l
</span></span><span style="display:flex;"><span>1349
</span></span><span style="display:flex;"><span>$ cat ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-identifier.xml /tmp/new-abc-orcids.txt | grep -oE <span style="color:#e6db74">&#39;[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}&#39;</span> | sort | uniq &gt; /tmp/2022-05-25-combined-orcids.txt
</span></span><span style="display:flex;"><span>$ wc -l /tmp/2022-05-25-combined-orcids.txt
</span></span><span style="display:flex;"><span>1395 /tmp/2022-05-25-combined-orcids.txt
</span></span></code></pre></div><ul>
<li>After combining and filtering them I resolved their names using my <code>resolve-orcids.py</code> script:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/resolve-orcids.py -i /tmp/2022-05-25-combined-orcids.txt -o /tmp/2022-05-25-combined-orcids-names.txt
</span></span></code></pre></div><ul>
<li>There are some names that changed, so I need to run them through the <code>fix-metadata-values.py</code> script:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ cat 2022-05-25-update-orcids.csv
</span></span><span style="display:flex;"><span>cg.creator.identifier,correct
</span></span><span style="display:flex;"><span>&#34;Andrea Fongar: 0000-0003-2084-1571&#34;,&#34;ANDREA CECILIA SANCHEZ BOGADO: 0000-0003-4549-6970&#34;
</span></span><span style="display:flex;"><span>&#34;Bekele Shiferaw: 0000-0002-3645-320X&#34;,&#34;Bekele A. Shiferaw: 0000-0002-3645-320X&#34;
</span></span><span style="display:flex;"><span>&#34;Henry Kpaka: 0000-0002-7480-2933&#34;,&#34;Henry Musa Kpaka: 0000-0002-7480-2933&#34;
</span></span><span style="display:flex;"><span>&#34;Josephine Agogbua: 0000-0001-6317-1227&#34;,&#34;Josephine Udunma Agogbua: 0000-0001-6317-1227&#34;
</span></span><span style="display:flex;"><span>&#34;Martha Lilia Del Río Duque: 0000-0002-0879-0292&#34;,&#34;Martha Del Río: 0000-0002-0879-0292&#34;
</span></span><span style="display:flex;"><span>$ ./ilri/fix-metadata-values.py -i 2022-05-25-update-orcids.csv -db dspace -u dspace -p <span style="color:#e6db74">&#39;fuuu&#39;</span> -f cg.creator.identifier -m <span style="color:#ae81ff">247</span> -t correct -d -n
</span></span><span style="display:flex;"><span>Connected to database.
</span></span><span style="display:flex;"><span>Would fix 4 occurences of: Andrea Fongar: 0000-0003-2084-1571
</span></span><span style="display:flex;"><span>Would fix 1 occurences of: Bekele Shiferaw: 0000-0002-3645-320X
</span></span><span style="display:flex;"><span>Would fix 2 occurences of: Josephine Agogbua: 0000-0001-6317-1227
</span></span><span style="display:flex;"><span>Would fix 34 occurences of: Martha Lilia Del Río Duque: 0000-0002-0879-0292
</span></span></code></pre></div><!-- raw HTML omitted -->

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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