diff --git a/content/posts/2019-12.md b/content/posts/2019-12.md index 6d8fa964e..35d73f6c4 100644 --- a/content/posts/2019-12.md +++ b/content/posts/2019-12.md @@ -212,4 +212,10 @@ UPDATE 1 - Abenet suggested we use `cg.reviewStatus` instead of `cg.review-status` and I agree that we should follow other examples like `DCTERMS.accessRights` and `DCTERMS.isPartOf` - I updated [my comment on the cg-core issue on GitHub](https://github.com/AgriculturalSemantics/cg-core/issues/14) +## 2019-12-30 + +- Altmetric responded a few days ago about the [item](https://hdl.handle.net/10568/97087) that has a different (lower) score for its Handle despite it having a correct DOI (with a higher score) + - She tweeted the repository link and agreed that it didn't get picked up by Altmetric + - She said she will add this to the existing ticket about the previous items I had raised an issue about + diff --git a/docs/2015-11/index.html b/docs/2015-11/index.html index d30f73f49..5144140de 100644 --- a/docs/2015-11/index.html +++ b/docs/2015-11/index.html @@ -31,7 +31,7 @@ Last week I had increased the limit from 30 to 60, which seemed to help, but now $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace 78 "/> - + diff --git a/docs/2015-12/index.html b/docs/2015-12/index.html index 1e6053882..c1209bce6 100644 --- a/docs/2015-12/index.html +++ b/docs/2015-12/index.html @@ -33,7 +33,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less -rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo -rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz "/> - + diff --git a/docs/2016-01/index.html b/docs/2016-01/index.html index c66591e09..1fe1f4868 100644 --- a/docs/2016-01/index.html +++ b/docs/2016-01/index.html @@ -25,7 +25,7 @@ Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_ I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated. Update GitHub wiki for documentation of maintenance tasks. "/> - + diff --git a/docs/2016-02/index.html b/docs/2016-02/index.html index 6cc9b1ddd..55ccfc366 100644 --- a/docs/2016-02/index.html +++ b/docs/2016-02/index.html @@ -35,7 +35,7 @@ I noticed we have a very interesting list of countries on CGSpace: Not only are there 49,000 countries, we have some blanks (25)… Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE” "/> - + diff --git a/docs/2016-03/index.html b/docs/2016-03/index.html index a7e70069d..e6acc09ca 100644 --- a/docs/2016-03/index.html +++ b/docs/2016-03/index.html @@ -25,7 +25,7 @@ Looking at issues with author authorities on CGSpace For some reason we still have the index-lucene-update cron job active on CGSpace, but I'm pretty sure we don't need it as of the latest few versions of Atmire's Listings and Reports module Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server "/> - + diff --git a/docs/2016-04/index.html b/docs/2016-04/index.html index c6724bf09..bf33023d6 100644 --- a/docs/2016-04/index.html +++ b/docs/2016-04/index.html @@ -29,7 +29,7 @@ After running DSpace for over five years I've never needed to look in any ot This will save us a few gigs of backup space we're paying for on S3 Also, I noticed the checker log has some errors we should pay attention to: "/> - + diff --git a/docs/2016-05/index.html b/docs/2016-05/index.html index 00b9eafa2..e3957d245 100644 --- a/docs/2016-05/index.html +++ b/docs/2016-05/index.html @@ -31,7 +31,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period! # awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l 3168 "/> - + diff --git a/docs/2016-06/index.html b/docs/2016-06/index.html index 66ab9f0a5..bc77e56d1 100644 --- a/docs/2016-06/index.html +++ b/docs/2016-06/index.html @@ -31,7 +31,7 @@ This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRec You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship "/> - + diff --git a/docs/2016-07/index.html b/docs/2016-07/index.html index f81557605..586b8a0c8 100644 --- a/docs/2016-07/index.html +++ b/docs/2016-07/index.html @@ -41,7 +41,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and In this case the select query was showing 95 results before the update "/> - + diff --git a/docs/2016-08/index.html b/docs/2016-08/index.html index 964b5e916..365a93a96 100644 --- a/docs/2016-08/index.html +++ b/docs/2016-08/index.html @@ -39,7 +39,7 @@ $ git checkout -b 55new 5_x-prod $ git reset --hard ilri/5_x-prod $ git rebase -i dspace-5.5 "/> - + diff --git a/docs/2016-09/index.html b/docs/2016-09/index.html index a6b6f798e..2a7904d93 100644 --- a/docs/2016-09/index.html +++ b/docs/2016-09/index.html @@ -31,7 +31,7 @@ It looks like we might be able to use OUs now, instead of DCs: $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)" "/> - + diff --git a/docs/2016-10/index.html b/docs/2016-10/index.html index 255b2d2c5..0e109dd98 100644 --- a/docs/2016-10/index.html +++ b/docs/2016-10/index.html @@ -39,7 +39,7 @@ I exported a random item's metadata as CSV, deleted all columns except id an 0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X "/> - + diff --git a/docs/2016-11/index.html b/docs/2016-11/index.html index db8df5b9b..3e9c9d695 100644 --- a/docs/2016-11/index.html +++ b/docs/2016-11/index.html @@ -23,7 +23,7 @@ Add dc.type to the output options for Atmire's Listings and Reports module ( Add dc.type to the output options for Atmire's Listings and Reports module (#286) "/> - + diff --git a/docs/2016-12/index.html b/docs/2016-12/index.html index a53f16fc1..5465b0cda 100644 --- a/docs/2016-12/index.html +++ b/docs/2016-12/index.html @@ -43,7 +43,7 @@ I see thousands of them in the logs for the last few months, so it's not rel I've raised a ticket with Atmire to ask Another worrying error from dspace.log is: "/> - + diff --git a/docs/2017-01/index.html b/docs/2017-01/index.html index 25363d85a..52ddc0322 100644 --- a/docs/2017-01/index.html +++ b/docs/2017-01/index.html @@ -25,7 +25,7 @@ I checked to see if the Solr sharding task that is supposed to run on January 1s I tested on DSpace Test as well and it doesn't work there either I asked on the dspace-tech mailing list because it seems to be broken, and actually now I'm not sure if we've ever had the sharding task run successfully over all these years "/> - + diff --git a/docs/2017-02/index.html b/docs/2017-02/index.html index 345f7270b..c60ae30c2 100644 --- a/docs/2017-02/index.html +++ b/docs/2017-02/index.html @@ -47,7 +47,7 @@ DELETE 1 Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301) Looks like we'll be using cg.identifier.ccafsprojectpii as the field name "/> - + diff --git a/docs/2017-03/index.html b/docs/2017-03/index.html index 7f67aa2b9..5a6b9efb0 100644 --- a/docs/2017-03/index.html +++ b/docs/2017-03/index.html @@ -51,7 +51,7 @@ Interestingly, it seems DSpace 4.x's thumbnails were sRGB, but forcing regen $ identify ~/Desktop/alc_contrastes_desafios.jpg /Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000 "/> - + diff --git a/docs/2017-04/index.html b/docs/2017-04/index.html index 3d78c79bc..674c35813 100644 --- a/docs/2017-04/index.html +++ b/docs/2017-04/index.html @@ -37,7 +37,7 @@ Testing the CMYK patch on a collection with 650 items: $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt "/> - + diff --git a/docs/2017-05/index.html b/docs/2017-05/index.html index e1c038c67..1b16dde12 100644 --- a/docs/2017-05/index.html +++ b/docs/2017-05/index.html @@ -15,7 +15,7 @@ - + diff --git a/docs/2017-06/index.html b/docs/2017-06/index.html index 8f9847692..d83e55d7f 100644 --- a/docs/2017-06/index.html +++ b/docs/2017-06/index.html @@ -15,7 +15,7 @@ - + diff --git a/docs/2017-07/index.html b/docs/2017-07/index.html index 23ef08269..883f5b26a 100644 --- a/docs/2017-07/index.html +++ b/docs/2017-07/index.html @@ -33,7 +33,7 @@ Merge changes for WLE Phase II theme rename (#329) Looking at extracting the metadata registries from ICARDA's MEL DSpace database so we can compare fields with CGSpace We can use PostgreSQL's extended output format (-x) plus sed to format the output into quasi XML: "/> - + diff --git a/docs/2017-08/index.html b/docs/2017-08/index.html index 48a255c95..e213f1af1 100644 --- a/docs/2017-08/index.html +++ b/docs/2017-08/index.html @@ -57,7 +57,7 @@ This was due to newline characters in the dc.description.abstract column, which I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet "/> - + diff --git a/docs/2017-09/index.html b/docs/2017-09/index.html index 18349316a..0a9945e94 100644 --- a/docs/2017-09/index.html +++ b/docs/2017-09/index.html @@ -29,7 +29,7 @@ Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two Ask Sisay to clean up the WLE approvers a bit, as Marianne's user account is both in the approvers step as well as the group "/> - + diff --git a/docs/2017-10/index.html b/docs/2017-10/index.html index a8434d992..f83c9e3b9 100644 --- a/docs/2017-10/index.html +++ b/docs/2017-10/index.html @@ -31,7 +31,7 @@ http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336 There appears to be a pattern but I'll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections "/> - + diff --git a/docs/2017-11/index.html b/docs/2017-11/index.html index 015fd0b83..84f9b5d87 100644 --- a/docs/2017-11/index.html +++ b/docs/2017-11/index.html @@ -45,7 +45,7 @@ Generate list of authors on CGSpace for Peter to go through and correct: dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv; COPY 54701 "/> - + diff --git a/docs/2017-12/index.html b/docs/2017-12/index.html index a2cd209ab..27e2ba488 100644 --- a/docs/2017-12/index.html +++ b/docs/2017-12/index.html @@ -27,7 +27,7 @@ The logs say “Timeout waiting for idle object” PostgreSQL activity says there are 115 connections currently The list of connections to XMLUI and REST API for today: "/> - + diff --git a/docs/2018-01/index.html b/docs/2018-01/index.html index cbbec0650..cf004a782 100644 --- a/docs/2018-01/index.html +++ b/docs/2018-01/index.html @@ -147,7 +147,7 @@ dspace.log.2018-01-02:34 Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let's Encrypt if it's just a handful of domains "/> - + diff --git a/docs/2018-02/index.html b/docs/2018-02/index.html index 61007f40d..cf7139c2e 100644 --- a/docs/2018-02/index.html +++ b/docs/2018-02/index.html @@ -27,7 +27,7 @@ We don't need to distinguish between internal and external works, so that ma Yesterday I figured out how to monitor DSpace sessions using JMX I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu's munin-plugins-java package and used the stuff I discovered about JMX in 2018-01 "/> - + @@ -599,7 +599,7 @@ UPDATE 1

2018-02-17

dspace=# update metadatavalue set text_value='United States Agency for International Development' where resource_type_id=2 and metadata_field_id=29 and text_value like '%U.S. Agency for International Development%';
diff --git a/docs/2018-03/index.html b/docs/2018-03/index.html
index 66db16861..a73abe11b 100644
--- a/docs/2018-03/index.html
+++ b/docs/2018-03/index.html
@@ -21,7 +21,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
 
 Export a CSV of the IITA community metadata for Martin Mueller
 "/>
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diff --git a/docs/2018-04/index.html b/docs/2018-04/index.html
index 3955ea72a..9b21b2cad 100644
--- a/docs/2018-04/index.html
+++ b/docs/2018-04/index.html
@@ -23,7 +23,7 @@ Catalina logs at least show some memory errors yesterday:
 I tried to test something on DSpace Test but noticed that it's down since god knows when
 Catalina logs at least show some memory errors yesterday:
 "/>
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+
 
 
     
diff --git a/docs/2018-05/index.html b/docs/2018-05/index.html
index fa6d1d27d..c22dfb70f 100644
--- a/docs/2018-05/index.html
+++ b/docs/2018-05/index.html
@@ -35,7 +35,7 @@ http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E
 Then I reduced the JVM heap size from 6144 back to 5120m
 Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the Ansible infrastructure scripts to support hosts choosing which distribution they want to use
 "/>
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diff --git a/docs/2018-06/index.html b/docs/2018-06/index.html
index 759b0831d..9991d1a96 100644
--- a/docs/2018-06/index.html
+++ b/docs/2018-06/index.html
@@ -55,7 +55,7 @@ real    74m42.646s
 user    8m5.056s
 sys     2m7.289s
 "/>
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diff --git a/docs/2018-07/index.html b/docs/2018-07/index.html
index c6c776242..76a559ac9 100644
--- a/docs/2018-07/index.html
+++ b/docs/2018-07/index.html
@@ -33,7 +33,7 @@ During the mvn package stage on the 5.8 branch I kept getting issues with java r
 
 There is insufficient memory for the Java Runtime Environment to continue.
 "/>
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diff --git a/docs/2018-08/index.html b/docs/2018-08/index.html
index 00b5e79ed..8e6dbc989 100644
--- a/docs/2018-08/index.html
+++ b/docs/2018-08/index.html
@@ -43,7 +43,7 @@ Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did
 The server only has 8GB of RAM so we'll eventually need to upgrade to a larger one because we'll start starving the OS, PostgreSQL, and command line batch processes
 I ran all system updates on DSpace Test and rebooted it
 "/>
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+
 
 
     
diff --git a/docs/2018-09/index.html b/docs/2018-09/index.html
index 922eb9882..8ae6d9688 100644
--- a/docs/2018-09/index.html
+++ b/docs/2018-09/index.html
@@ -27,7 +27,7 @@ I'll update the DSpace role in our Ansible infrastructure playbooks and run
 Also, I'll re-run the postgresql tasks because the custom PostgreSQL variables are dynamic according to the system's RAM, and we never re-ran them after migrating to larger Linodes last month
 I'm testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I'm getting those autowire errors in Tomcat 8.5.30 again:
 "/>
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diff --git a/docs/2018-10/index.html b/docs/2018-10/index.html
index f81561e84..a0997e910 100644
--- a/docs/2018-10/index.html
+++ b/docs/2018-10/index.html
@@ -23,7 +23,7 @@ I created a GitHub issue to track this #389, because I'm super busy in Nairo
 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items
 I created a GitHub issue to track this #389, because I'm super busy in Nairobi right now
 "/>
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diff --git a/docs/2018-11/index.html b/docs/2018-11/index.html
index d5b06f57c..111c9782e 100644
--- a/docs/2018-11/index.html
+++ b/docs/2018-11/index.html
@@ -33,7 +33,7 @@ Send a note about my dspace-statistics-api to the dspace-tech mailing list
 Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage
 Today these are the top 10 IPs:
 "/>
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diff --git a/docs/2018-12/index.html b/docs/2018-12/index.html
index ac0cf71c8..7b0ec999e 100644
--- a/docs/2018-12/index.html
+++ b/docs/2018-12/index.html
@@ -33,7 +33,7 @@ Then I ran all system updates and restarted the server
 
 I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another Ghostscript vulnerability last week
 "/>
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diff --git a/docs/2019-01/index.html b/docs/2019-01/index.html
index 34496b03f..223827286 100644
--- a/docs/2019-01/index.html
+++ b/docs/2019-01/index.html
@@ -47,7 +47,7 @@ I don't see anything interesting in the web server logs around that time tho
     357 207.46.13.1
     903 54.70.40.11
 "/>
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diff --git a/docs/2019-02/index.html b/docs/2019-02/index.html
index d3babd297..e255df5a6 100644
--- a/docs/2019-02/index.html
+++ b/docs/2019-02/index.html
@@ -69,7 +69,7 @@ real    0m19.873s
 user    0m22.203s
 sys     0m1.979s
 "/>
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diff --git a/docs/2019-03/index.html b/docs/2019-03/index.html
index 41d4df967..8386e00fa 100644
--- a/docs/2019-03/index.html
+++ b/docs/2019-03/index.html
@@ -43,7 +43,7 @@ Most worryingly, there are encoding errors in the abstracts for eleven items, fo
 
 I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs
 "/>
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diff --git a/docs/2019-04/index.html b/docs/2019-04/index.html
index f039ce782..7a9f24460 100644
--- a/docs/2019-04/index.html
+++ b/docs/2019-04/index.html
@@ -61,7 +61,7 @@ $ ./fix-metadata-values.py -i /tmp/2019-02-21-fix-4-regions.csv -db dspace -u ds
 $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-2-countries.csv -db dspace -u dspace -p 'fuuu' -m 228 -f cg.coverage.country -d
 $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace -u dspace -p 'fuuu' -m 231 -f cg.coverage.region -d
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diff --git a/docs/2019-05/index.html b/docs/2019-05/index.html
index a8f9693c5..929bf4ab1 100644
--- a/docs/2019-05/index.html
+++ b/docs/2019-05/index.html
@@ -45,7 +45,7 @@ DELETE 1
 
 But after this I tried to delete the item from the XMLUI and it is still present…
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diff --git a/docs/2019-06/index.html b/docs/2019-06/index.html
index 83a1a09c8..c36fdb287 100644
--- a/docs/2019-06/index.html
+++ b/docs/2019-06/index.html
@@ -31,7 +31,7 @@ Run system updates on CGSpace (linode18) and reboot it
 
 Skype with Marie-Angélique and Abenet about CG Core v2
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diff --git a/docs/2019-07/index.html b/docs/2019-07/index.html
index 81ed2a2ab..3bce25028 100644
--- a/docs/2019-07/index.html
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@@ -35,7 +35,7 @@ CGSpace
 
 Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community
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diff --git a/docs/2019-08/index.html b/docs/2019-08/index.html
index f04b844ea..f4a1cc968 100644
--- a/docs/2019-08/index.html
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@@ -43,7 +43,7 @@ After rebooting, all statistics cores were loaded… wow, that's lucky.
 
 Run system updates on DSpace Test (linode19) and reboot it
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