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Add notes for 2021-09-13
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@ -36,7 +36,7 @@ Merge changes for WLE Phase II theme rename (#329)
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Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace
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We can use PostgreSQL’s extended output format (-x) plus sed to format the output into quasi XML:
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"/>
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<meta name="generator" content="Hugo 0.87.0" />
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<meta name="generator" content="Hugo 0.88.1" />
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@ -132,7 +132,7 @@ We can use PostgreSQL’s extended output format (-x) plus sed to format the
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<li>Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace</li>
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<li>We can use PostgreSQL’s extended output format (<code>-x</code>) plus <code>sed</code> to format the output into quasi XML:</li>
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</ul>
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<pre><code>$ psql dspacenew -x -c 'select element, qualifier, scope_note from metadatafieldregistry where metadata_schema_id=5 order by element, qualifier;' | sed -r 's:^-\[ RECORD (.*) \]-+$:</dc-type>\n<dc-type>\n<schema>cg</schema>:;s:([^ ]*) +\| (.*): <\1>\2</\1>:;s:^$:</dc-type>:;1s:</dc-type>\n::'
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<pre tabindex="0"><code>$ psql dspacenew -x -c 'select element, qualifier, scope_note from metadatafieldregistry where metadata_schema_id=5 order by element, qualifier;' | sed -r 's:^-\[ RECORD (.*) \]-+$:</dc-type>\n<dc-type>\n<schema>cg</schema>:;s:([^ ]*) +\| (.*): <\1>\2</\1>:;s:^$:</dc-type>:;1s:</dc-type>\n::'
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</code></pre><ul>
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<li>The <code>sed</code> script is from a post on the <a href="https://www.postgresql.org/message-id/437E44A5.508%40ultimeth.com">PostgreSQL mailing list</a></li>
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<li>Abenet says the ILRI board wants to be able to have “lead author” for every item, so I’ve whipped up a WIP test in the <code>5_x-lead-author</code> branch</li>
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@ -151,11 +151,11 @@ We can use PostgreSQL’s extended output format (-x) plus sed to format the
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<li>Adjust WLE Research Theme to include both Phase I and II on the submission form according to editor feedback (<a href="https://github.com/ilri/DSpace/pull/330">#330</a>)</li>
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<li>Generate list of fields in the current CGSpace <code>cg</code> scheme so we can record them properly in the metadata registry:</li>
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</ul>
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<pre><code>$ psql dspace -x -c 'select element, qualifier, scope_note from metadatafieldregistry where metadata_schema_id=2 order by element, qualifier;' | sed -r 's:^-\[ RECORD (.*) \]-+$:</dc-type>\n<dc-type>\n<schema>cg</schema>:;s:([^ ]*) +\| (.*): <\1>\2</\1>:;s:^$:</dc-type>:;1s:</dc-type>\n::' > cg-types.xml
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<pre tabindex="0"><code>$ psql dspace -x -c 'select element, qualifier, scope_note from metadatafieldregistry where metadata_schema_id=2 order by element, qualifier;' | sed -r 's:^-\[ RECORD (.*) \]-+$:</dc-type>\n<dc-type>\n<schema>cg</schema>:;s:([^ ]*) +\| (.*): <\1>\2</\1>:;s:^$:</dc-type>:;1s:</dc-type>\n::' > cg-types.xml
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</code></pre><ul>
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<li>CGSpace was unavailable briefly, and I saw this error in the DSpace log file:</li>
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</ul>
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<pre><code>2017-07-05 13:05:36,452 ERROR org.dspace.storage.rdbms.DatabaseManager @ SQL connection Error -
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<pre tabindex="0"><code>2017-07-05 13:05:36,452 ERROR org.dspace.storage.rdbms.DatabaseManager @ SQL connection Error -
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org.postgresql.util.PSQLException: FATAL: remaining connection slots are reserved for non-replication superuser connections
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</code></pre><ul>
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<li>Looking at the <code>pg_stat_activity</code> table I saw there were indeed 98 active connections to PostgreSQL, and at this time the limit is 100, so that makes sense</li>
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@ -163,7 +163,7 @@ org.postgresql.util.PSQLException: FATAL: remaining connection slots are reserve
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<li>Abenet said she was generating a report with Atmire’s CUA module, so it could be due to that?</li>
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<li>Looking in the logs I see this random error again that I should report to DSpace:</li>
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</ul>
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<pre><code>2017-07-05 13:50:07,196 ERROR org.dspace.statistics.SolrLogger @ COUNTRY ERROR: EU
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<pre tabindex="0"><code>2017-07-05 13:50:07,196 ERROR org.dspace.statistics.SolrLogger @ COUNTRY ERROR: EU
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</code></pre><ul>
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<li>Seems to come from <code>dspace-api/src/main/java/org/dspace/statistics/SolrLogger.java</code></li>
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</ul>
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@ -211,7 +211,7 @@ org.postgresql.util.PSQLException: FATAL: remaining connection slots are reserve
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<ul>
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<li>Move two top-level communities to be sub-communities of ILRI Projects</li>
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</ul>
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<pre><code>$ for community in 10568/2347 10568/25209; do /home/cgspace.cgiar.org/bin/dspace community-filiator --set --parent=10568/27629 --child="$community"; done
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<pre tabindex="0"><code>$ for community in 10568/2347 10568/25209; do /home/cgspace.cgiar.org/bin/dspace community-filiator --set --parent=10568/27629 --child="$community"; done
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</code></pre><ul>
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<li>Discuss CGIAR Library data cleanup with Sisay and Abenet</li>
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</ul>
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@ -241,7 +241,7 @@ org.postgresql.util.PSQLException: FATAL: remaining connection slots are reserve
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<ul>
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<li>Looks like the final list of metadata corrections for CCAFS project tags will be:</li>
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</ul>
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<pre><code>delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and text_value='PII-FP4_CRMWestAfrica';
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<pre tabindex="0"><code>delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and text_value='PII-FP4_CRMWestAfrica';
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update metadatavalue set text_value='FP3_VietnamLED' where resource_type_id=2 and metadata_field_id=134 and text_value='FP3_VeitnamLED';
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update metadatavalue set text_value='PII-FP1_PIRCCA' where resource_type_id=2 and metadata_field_id=235 and text_value='PII-SEA_PIRCCA';
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delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and text_value='PII-WA_IntegratedInterventions';
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@ -250,7 +250,7 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
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<li>Temporarily increase the nginx upload limit to 200MB for Sisay to upload the CIAT presentations</li>
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<li>Looking at CGSpace activity page, there are 52 Baidu bots concurrently crawling our website (I copied the activity page to a text file and grep it)!</li>
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</ul>
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<pre><code>$ grep 180.76. /tmp/status | awk '{print $5}' | sort | uniq | wc -l
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<pre tabindex="0"><code>$ grep 180.76. /tmp/status | awk '{print $5}' | sort | uniq | wc -l
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52
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</code></pre><ul>
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<li>From looking at the <code>dspace.log</code> I see they are all using the same session, which means our Crawler Session Manager Valve is working</li>
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