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Add notes for 2023-03-09

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Alan Orth 2023-03-09 17:01:50 +03:00
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content/posts/2023-03.md
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@ -164,6 +164,12 @@ value.replace("<jats:sub>","").replace("</jats:sub>", "").replace("<jats:sup>","
``` ```
- I uploaded the 350 items to DSpace Test so Peter and Abenet can explore them - I uploaded the 350 items to DSpace Test so Peter and Abenet can explore them
- I exported a list of authors, affiliations, and funders from the new items to let Peter correct them:
```console
$ csvcut -c dc.contributor.author /tmp/new-items.csv | sed -e 1d -e 's/"//g' -e 's/||/\n/g' | sort | uniq -c | sort -nr | awk '{$1=""; print $0}' | sed -e 's/^ //' > /tmp/new-authors.csv
```
- Meeting with FAO AGRIS team about how to detect duplicates - Meeting with FAO AGRIS team about how to detect duplicates
- They are currently using a sha256 hash on titles, which will work, but will only return exact matches - They are currently using a sha256 hash on titles, which will work, but will only return exact matches
- I told them to try to normalize the string, drop stop words, etc to increase the possibility that the hash matches - I told them to try to normalize the string, drop stop words, etc to increase the possibility that the hash matches
@ -172,4 +178,10 @@ value.replace("<jats:sub>","").replace("</jats:sub>", "").replace("<jats:sup>","
- I said I prefer to write a small script for her that will check the first author and first affiliation... I could do it easily in Python, but would need to put a web frontend on it for her - I said I prefer to write a small script for her that will check the first author and first affiliation... I could do it easily in Python, but would need to put a web frontend on it for her
- Unless we could do that in AReS reports somehow - Unless we could do that in AReS reports somehow
## 2023-03-09
- Apply a bunch of corrections to authors, affiliations, and donors on the new items on DSpace Test
- Meeting with Peter and Abenet about future OpenRXV developments, DSpace 7, etc
- I submitted an [issue on MEL asking them to add provenance metadata when submitting to CGSpace](https://github.com/CodeObia/MEL/issues/11173)
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->

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@ -16,7 +16,7 @@ I finally got through with porting the input form from DSpace 6 to DSpace 7
<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-03/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-03/" />
<meta property="article:published_time" content="2023-03-01T07:58:36+03:00" /> <meta property="article:published_time" content="2023-03-01T07:58:36+03:00" />
<meta property="article:modified_time" content="2023-03-07T17:15:26+03:00" /> <meta property="article:modified_time" content="2023-03-08T18:53:32+03:00" />
@ -38,9 +38,9 @@ I finally got through with porting the input form from DSpace 6 to DSpace 7
"@type": "BlogPosting", "@type": "BlogPosting",
"headline": "March, 2023", "headline": "March, 2023",
"url": "https://alanorth.github.io/cgspace-notes/2023-03/", "url": "https://alanorth.github.io/cgspace-notes/2023-03/",
"wordCount": "1336", "wordCount": "1433",
"datePublished": "2023-03-01T07:58:36+03:00", "datePublished": "2023-03-01T07:58:36+03:00",
"dateModified": "2023-03-07T17:15:26+03:00", "dateModified": "2023-03-08T18:53:32+03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -294,6 +294,10 @@ pd.options.mode.nullable_dtypes = True
</span></span><span style="display:flex;"><span>value.replace(&#34;&lt;jats:sub&gt;&#34;,&#34;&#34;).replace(&#34;&lt;/jats:sub&gt;&#34;, &#34;&#34;).replace(&#34;&lt;jats:sup&gt;&#34;,&#34;&#34;).replace(&#34;&lt;/jats:sup&gt;&#34;, &#34;&#34;) </span></span><span style="display:flex;"><span>value.replace(&#34;&lt;jats:sub&gt;&#34;,&#34;&#34;).replace(&#34;&lt;/jats:sub&gt;&#34;, &#34;&#34;).replace(&#34;&lt;jats:sup&gt;&#34;,&#34;&#34;).replace(&#34;&lt;/jats:sup&gt;&#34;, &#34;&#34;)
</span></span></code></pre></div><ul> </span></span></code></pre></div><ul>
<li>I uploaded the 350 items to DSpace Test so Peter and Abenet can explore them</li> <li>I uploaded the 350 items to DSpace Test so Peter and Abenet can explore them</li>
<li>I exported a list of authors, affiliations, and funders from the new items to let Peter correct them:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ csvcut -c dc.contributor.author /tmp/new-items.csv | sed -e 1d -e <span style="color:#e6db74">&#39;s/&#34;//g&#39;</span> -e <span style="color:#e6db74">&#39;s/||/\n/g&#39;</span> | sort | uniq -c | sort -nr | awk <span style="color:#e6db74">&#39;{$1=&#34;&#34;; print $0}&#39;</span> | sed -e <span style="color:#e6db74">&#39;s/^ //&#39;</span> &gt; /tmp/new-authors.csv
</span></span></code></pre></div><ul>
<li>Meeting with FAO AGRIS team about how to detect duplicates <li>Meeting with FAO AGRIS team about how to detect duplicates
<ul> <ul>
<li>They are currently using a sha256 hash on titles, which will work, but will only return exact matches</li> <li>They are currently using a sha256 hash on titles, which will work, but will only return exact matches</li>
@ -308,6 +312,15 @@ pd.options.mode.nullable_dtypes = True
</ul> </ul>
</li> </li>
</ul> </ul>
<h2 id="2023-03-09">2023-03-09</h2>
<ul>
<li>Apply a bunch of corrections to authors, affiliations, and donors on the new items on DSpace Test</li>
<li>Meeting with Peter and Abenet about future OpenRXV developments, DSpace 7, etc
<ul>
<li>I submitted an <a href="https://github.com/CodeObia/MEL/issues/11173">issue on MEL asking them to add provenance metadata when submitting to CGSpace</a></li>
</ul>
</li>
</ul>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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