Add notes for 2018-10-13

content/posts/2018-10.md

@@ -222,4 +222,28 @@ COPY 10000
 - CTA uploaded some infographics that are very tall and their thumbnails disrupt the item lists on the front page and in their communities and collections
 - I decided to constrain the max height of these to 200px using CSS ([#392](https://github.com/ilri/DSpace/pull/392))
 
+## 2018-10-13
+
+- Run all system updates on DSpace Test (linode19) and reboot it
+- Look through Peter's list of 746 author corrections in OpenRefine
+- I first facet by blank, trim whitespace, and then check for weird characters that might be indicative of encoding issues with this GREL:
+
+```
+or(
+  isNotNull(value.match(/.*\uFFFD.*/)),
+  isNotNull(value.match(/.*\u00A0.*/)),
+  isNotNull(value.match(/.*\u200A.*/)),
+  isNotNull(value.match(/.*\u2019.*/)),
+  isNotNull(value.match(/.*\u00b4.*/))
+)
+```
+
+- Then I exported and applied them on my local test server:
+
+```
+$ ./fix-metadata-values.py -i 2018-10-11-top-authors.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t CORRECT -m 3
+```
+
+- I will apply these on CGSpace when I do the other updates tomorrow, as well as double check the high scoring ones to see if they are correct in Sisay's author controlled vocabulary
+
 <!-- vim: set sw=2 ts=2: -->

docs/2015-11/index.html

@@ -38,7 +38,7 @@ $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspac
 
 
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docs/2015-12/index.html

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docs/2016-01/index.html

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docs/2016-02/index.html

@@ -44,7 +44,7 @@ Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE&r
 
 
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docs/2016-03/index.html

@@ -30,7 +30,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
 
 
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docs/2016-04/index.html

@@ -34,7 +34,7 @@ Also, I noticed the checker log has some errors we should pay attention to:
 
 
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docs/2016-05/index.html

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docs/2016-06/index.html

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docs/2016-07/index.html

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docs/2016-08/index.html

@@ -46,7 +46,7 @@ $ git rebase -i dspace-5.5
 
 
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docs/2016-09/index.html

@@ -38,7 +38,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=or
 
 
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docs/2016-10/index.html

@@ -46,7 +46,7 @@ I exported a random item’s metadata as CSV, deleted all columns except id
 
 
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docs/2016-11/index.html

@@ -30,7 +30,7 @@ Add dc.type to the output options for Atmire’s Listings and Reports module
 
 
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docs/2016-12/index.html

@@ -54,7 +54,7 @@ Another worrying error from dspace.log is:
 
 
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docs/2017-01/index.html

@@ -30,7 +30,7 @@ I asked on the dspace-tech mailing list because it seems to be broken, and actua
 
 
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docs/2017-02/index.html

@@ -58,7 +58,7 @@ Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name
 
 
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docs/2017-03/index.html

@@ -62,7 +62,7 @@ $ identify ~/Desktop/alc_contrastes_desafios.jpg
 
 
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docs/2017-04/index.html

@@ -48,7 +48,7 @@ $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Th
 
 
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docs/2017-05/index.html

@@ -14,7 +14,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="May, 2017"/>
 <meta name="twitter:description" content="2017-05-01  ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items:  https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683   2017-05-02  Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request  2017-05-04  Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
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docs/2017-06/index.html

@@ -14,7 +14,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="June, 2017"/>
 <meta name="twitter:description" content="2017-06-01  After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
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docs/2017-07/index.html

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docs/2017-08/index.html

@@ -62,7 +62,7 @@ Then I cleaned up the author authorities and HTML characters in OpenRefine and s
 
 
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docs/2017-09/index.html

@@ -38,7 +38,7 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account
 
 
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docs/2017-10/index.html

@@ -42,7 +42,7 @@ Add Katherine Lutz to the groups for content submission and edit steps of the CG
 
 
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docs/2017-11/index.html

@@ -62,7 +62,7 @@ COPY 54701
 
 
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docs/2017-12/index.html

@@ -32,7 +32,7 @@ The list of connections to XMLUI and REST API for today:
 
 
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docs/2018-01/index.html

@@ -170,7 +170,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
 
 
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docs/2018-02/index.html

@@ -32,7 +32,7 @@ I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu’s munin-pl
 
 
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docs/2018-03/index.html

@@ -26,7 +26,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
 
 
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docs/2018-04/index.html

@@ -28,7 +28,7 @@ Catalina logs at least show some memory errors yesterday:
 
 
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docs/2018-05/index.html

@@ -40,7 +40,7 @@ Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked
 
 
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docs/2018-06/index.html

@@ -68,7 +68,7 @@ sys     2m7.289s
 
 
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docs/2018-07/index.html

@@ -46,7 +46,7 @@ There is insufficient memory for the Java Runtime Environment to continue.
 
 
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docs/2018-08/index.html

@@ -54,7 +54,7 @@ I ran all system updates on DSpace Test and rebooted it
 
 
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docs/2018-09/index.html

@@ -32,7 +32,7 @@ I’m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I
 
 
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docs/2018-10/index.html

@@ -9,12 +9,12 @@
 <meta property="og:description" content="2018-10-01  Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now  2018-10-03  I see Moayad was busy collecting item views and downloads from CGSpace yesterday:  # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Oct/2018&quot; | awk &#39;{print $1} &#39; | sort | uniq -c | sort -n | tail -n 10 933 40." />
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2018-10/" /><meta property="article:published_time" content="2018-10-01T22:31:54&#43;03:00"/>
-<meta property="article:modified_time" content="2018-10-11T11:17:07&#43;03:00"/>
+<meta property="article:modified_time" content="2018-10-11T14:25:13&#43;03:00"/>
 
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="October, 2018"/>
 <meta name="twitter:description" content="2018-10-01  Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now  2018-10-03  I see Moayad was busy collecting item views and downloads from CGSpace yesterday:  # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Oct/2018&quot; | awk &#39;{print $1} &#39; | sort | uniq -c | sort -n | tail -n 10 933 40."/>
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+<meta name="generator" content="Hugo 0.49.2" />
 
 
     
@@ -24,9 +24,9 @@
   "@type": "BlogPosting",
   "headline": "October, 2018",
   "url": "https://alanorth.github.io/cgspace-notes/2018-10/",
-  "wordCount": "1407",
+  "wordCount": "1519",
   "datePublished": "2018-10-01T22:31:54&#43;03:00",
-  "dateModified": "2018-10-11T11:17:07&#43;03:00",
+  "dateModified": "2018-10-11T14:25:13&#43;03:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -344,6 +344,34 @@ COPY 10000
 <li>I decided to constrain the max height of these to 200px using CSS (<a href="https://github.com/ilri/DSpace/pull/392">#392</a>)</li>
 </ul>
 
+<h2 id="2018-10-13">2018-10-13</h2>
+
+<ul>
+<li>Run all system updates on DSpace Test (linode19) and reboot it</li>
+<li>Look through Peter&rsquo;s list of 746 author corrections in OpenRefine</li>
+<li>I first facet by blank, trim whitespace, and then check for weird characters that might be indicative of encoding issues with this GREL:</li>
+</ul>
+
+<pre><code>or(
+  isNotNull(value.match(/.*\uFFFD.*/)),
+  isNotNull(value.match(/.*\u00A0.*/)),
+  isNotNull(value.match(/.*\u200A.*/)),
+  isNotNull(value.match(/.*\u2019.*/)),
+  isNotNull(value.match(/.*\u00b4.*/))
+)
+</code></pre>
+
+<ul>
+<li>Then I exported and applied them on my local test server:</li>
+</ul>
+
+<pre><code>$ ./fix-metadata-values.py -i 2018-10-11-top-authors.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t CORRECT -m 3
+</code></pre>
+
+<ul>
+<li>I will apply these on CGSpace when I do the other updates tomorrow, as well as double check the high scoring ones to see if they are correct in Sisay&rsquo;s author controlled vocabulary</li>
+</ul>
+
 <!-- vim: set sw=2 ts=2: -->
 
 

docs/404.html

@@ -13,7 +13,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="404 Page not found"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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docs/categories/index.html

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 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Categories"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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docs/categories/notes/index.html

@@ -14,7 +14,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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 <meta name="twitter:card" content="summary"/>
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 <meta name="twitter:card" content="summary"/>
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 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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 <meta name="twitter:card" content="summary"/>
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 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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docs/cgiar-library-migration/index.html

@@ -14,7 +14,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGIAR Library Migration"/>
 <meta name="twitter:description" content="Notes on the migration of the CGIAR Library to CGSpace"/>
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docs/index.html

@@ -14,7 +14,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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docs/page/2/index.html

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 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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docs/page/3/index.html

@@ -14,7 +14,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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docs/page/4/index.html

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 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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+<meta name="generator" content="Hugo 0.49.2" />
 
 
     

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@@ -14,7 +14,7 @@
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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docs/posts/page/2/index.html

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 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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docs/posts/page/3/index.html

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 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
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docs/sitemap.xml

@@ -4,7 +4,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/2018-10/</loc>
-    <lastmod>2018-10-11T11:17:07+03:00</lastmod>
+    <lastmod>2018-10-11T14:25:13+03:00</lastmod>
   </url>
   
   <url>
@@ -189,7 +189,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/</loc>
-    <lastmod>2018-10-11T11:17:07+03:00</lastmod>
+    <lastmod>2018-10-11T14:25:13+03:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -200,7 +200,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
-    <lastmod>2018-10-11T11:17:07+03:00</lastmod>
+    <lastmod>2018-10-11T14:25:13+03:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -212,13 +212,13 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
-    <lastmod>2018-10-11T11:17:07+03:00</lastmod>
+    <lastmod>2018-10-11T14:25:13+03:00</lastmod>
     <priority>0</priority>
   </url>
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
-    <lastmod>2018-10-11T11:17:07+03:00</lastmod>
+    <lastmod>2018-10-11T14:25:13+03:00</lastmod>
     <priority>0</priority>
   </url>
   

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@@ -14,7 +14,7 @@
 <meta name="twitter:card" content="summary"/>
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docs/tags/notes/page/4/index.html

@@ -14,7 +14,7 @@
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 <meta name="twitter:title" content="Notes"/>
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docs/tags/page/2/index.html

@@ -14,7 +14,7 @@
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docs/tags/page/3/index.html

@@ -14,7 +14,7 @@
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docs/tags/page/4/index.html

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