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Add notes for 2021-09-24

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Alan Orth 2021-09-24 14:24:00 +03:00
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content/posts/2021-09.md
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@ -241,4 +241,51 @@ localhost/dspace63= > \COPY (SELECT collection_id,uuid FROM collection WHERE col
COPY 1139
```
## 2021-09-24
- Peter and Abenet agreed that we should consider converting more of our UPPER CASE metadata values to Title Case
- It seems that these fields are all still using UPPER CASE:
- cg.subject.alliancebiovciat
- cg.species.breed
- cg.subject.bioversity
- cg.subject.ccafs
- cg.subject.ciat
- cg.subject.cip
- cg.identifier.iitatheme
- cg.subject.iita
- cg.subject.ilri
- cg.subject.pabra
- cg.river.basin
- cg.coverage.subregion (done)
- dcterms.audience (done)
- cg.subject.wle
- We can do some of these without even asking anyone, for example `cg.coverage.subregion`, `cg.river.basin`, and `dcterms.audience`
- First, I will look at `cg.coverage.subregion`
- These should ideally come from ISO 3166-2 subdivisions
- I will sentence case them and then create a controlled vocabulary from those that are matching (and worry about cleaning the rest up later)
```console
localhost/dspace63= > UPDATE metadatavalue SET text_value=INITCAP(text_value) WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=231;
UPDATE 2903
localhost/dspace63= > \COPY (SELECT DISTINCT text_value as "cg.coverage.subregion" FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 231) to /tmp/2021-09-24-subregions.txt;
COPY 1200
```
- Then I process the list for matches with my `subdivision-lookup.py` script, and extract only the values that matched:
```console
$ ./ilri/subdivision-lookup.py -i /tmp/2021-09-24-subregions.txt -o /tmp/subregions.csv
$ csvgrep -c matched -m 'true' /tmp/subregions.csv | csvcut -c 1 | sed 1d > /tmp/subregions-matched.txt
$ wc -l /tmp/subregions-matched.txt
81 /tmp/subregions-matched.txt
```
- Then I updated the controlled vocabulary in the submission forms
- I did the same for `dcterms.audience`, taking special care to a few all-caps values:
```console
localhost/dspace63= > UPDATE metadatavalue SET text_value=INITCAP(text_value) WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=144 AND text_value != 'NGOS' AND text_value != 'CGIAR';
localhost/dspace63= > UPDATE metadatavalue SET text_value='NGOs' WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=144 AND text_value = 'NGOS';
```
<!-- vim: set sw=2 ts=2: -->

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@ -26,7 +26,7 @@ The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search qu
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-09/" />
<meta property="article:published_time" content="2021-09-01T09:14:07+03:00" />
<meta property="article:modified_time" content="2021-09-23T18:19:11+03:00" />
<meta property="article:modified_time" content="2021-09-23T18:32:47+03:00" />
@ -58,9 +58,9 @@ The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search qu
"@type": "BlogPosting",
"headline": "September, 2021",
"url": "https://alanorth.github.io/cgspace-notes/2021-09/",
"wordCount": "1775",
"wordCount": "2030",
"datePublished": "2021-09-01T09:14:07+03:00",
"dateModified": "2021-09-23T18:19:11+03:00",
"dateModified": "2021-09-23T18:32:47+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -403,6 +403,55 @@ $ csvcut -c 1 /tmp/2021-09-23-affiliations.csv | sed 1d &gt; /tmp/affiliations.t
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">localhost/dspace63= &gt; \COPY (SELECT collection_id,uuid FROM collection WHERE collection_id IS NOT NULL) TO /tmp/2021-09-23-collection-id2uuid.csv WITH CSV HEADER;
COPY 1139
</code></pre><h2 id="2021-09-24">2021-09-24</h2>
<ul>
<li>Peter and Abenet agreed that we should consider converting more of our UPPER CASE metadata values to Title Case
<ul>
<li>It seems that these fields are all still using UPPER CASE:
<ul>
<li>cg.subject.alliancebiovciat</li>
<li>cg.species.breed</li>
<li>cg.subject.bioversity</li>
<li>cg.subject.ccafs</li>
<li>cg.subject.ciat</li>
<li>cg.subject.cip</li>
<li>cg.identifier.iitatheme</li>
<li>cg.subject.iita</li>
<li>cg.subject.ilri</li>
<li>cg.subject.pabra</li>
<li>cg.river.basin</li>
<li>cg.coverage.subregion (done)</li>
<li>dcterms.audience (done)</li>
<li>cg.subject.wle</li>
</ul>
</li>
<li>We can do some of these without even asking anyone, for example <code>cg.coverage.subregion</code>, <code>cg.river.basin</code>, and <code>dcterms.audience</code></li>
</ul>
</li>
<li>First, I will look at <code>cg.coverage.subregion</code>
<ul>
<li>These should ideally come from ISO 3166-2 subdivisions</li>
<li>I will sentence case them and then create a controlled vocabulary from those that are matching (and worry about cleaning the rest up later)</li>
</ul>
</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">localhost/dspace63= &gt; UPDATE metadatavalue SET text_value=INITCAP(text_value) WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=231;
UPDATE 2903
localhost/dspace63= &gt; \COPY (SELECT DISTINCT text_value as &quot;cg.coverage.subregion&quot; FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 231) to /tmp/2021-09-24-subregions.txt;
COPY 1200
</code></pre><ul>
<li>Then I process the list for matches with my <code>subdivision-lookup.py</code> script, and extract only the values that matched:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ ./ilri/subdivision-lookup.py -i /tmp/2021-09-24-subregions.txt -o /tmp/subregions.csv
$ csvgrep -c matched -m 'true' /tmp/subregions.csv | csvcut -c 1 | sed 1d &gt; /tmp/subregions-matched.txt
$ wc -l /tmp/subregions-matched.txt
81 /tmp/subregions-matched.txt
</code></pre><ul>
<li>Then I updated the controlled vocabulary in the submission forms</li>
<li>I did the same for <code>dcterms.audience</code>, taking special care to a few all-caps values:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">localhost/dspace63= &gt; UPDATE metadatavalue SET text_value=INITCAP(text_value) WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=144 AND text_value != 'NGOS' AND text_value != 'CGIAR';
localhost/dspace63= &gt; UPDATE metadatavalue SET text_value='NGOs' WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=144 AND text_value = 'NGOS';
</code></pre><!-- raw HTML omitted -->

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