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Regenerate docs
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@ -10,7 +10,7 @@
|
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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<meta property="og:type" content="website" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:updated_time" content="2022-07-28T16:55:36+03:00" />
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<meta property="og:updated_time" content="2022-08-01T10:22:36+03:00" />
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@ -31,7 +31,7 @@
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<!-- combined, minified CSS -->
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<link href="https://alanorth.github.io/cgspace-notes/css/style.beb8012edc08ba10be012f079d618dc243812267efe62e11f22fe49618f976a4.css" rel="stylesheet" integrity="sha256-vrgBLtwIuhC+AS8HnWGNwkOBImfv5i4R8i/klhj5dqQ=" crossorigin="anonymous">
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F+GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous">
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<!-- minified Font Awesome for SVG icons -->
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-08/">August, 2022</a></h2>
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<p class="blog-post-meta"><time datetime="2022-08-01T10:22:36+03:00">Mon Aug 01, 2022</time> by Alan Orth in
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
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||||
</header>
|
||||
<h2 id="2022-08-01">2022-08-01</h2>
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||||
<ul>
|
||||
<li>Our request to add <a href="https://github.com/spdx/license-list-XML/issues/1525">CC-BY-3.0-IGO to SPDX</a> was approved a few weeks ago</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2022-08/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
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||||
<header>
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||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-07/">July, 2022</a></h2>
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||||
@ -328,38 +349,6 @@
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||||
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-10/">October, 2021</a></h2>
|
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<p class="blog-post-meta"><time datetime="2021-10-01T11:14:07+03:00">Fri Oct 01, 2021</time> by Alan Orth in
|
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<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
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|
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</p>
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</header>
|
||||
<h2 id="2021-10-01">2021-10-01</h2>
|
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<ul>
|
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<li>Export all affiliations on CGSpace and run them against the latest RoR data dump:</li>
|
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</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspace63= > \COPY (SELECT DISTINCT text_value as "cg.contributor.affiliation", count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
|
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</span></span><span style="display:flex;"><span>$ csvcut -c <span style="color:#ae81ff">1</span> /tmp/2021-10-01-affiliations.csv | sed 1d > /tmp/2021-10-01-affiliations.txt
|
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</span></span><span style="display:flex;"><span>$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
|
||||
</span></span><span style="display:flex;"><span>ations-matching.csv
|
||||
</span></span><span style="display:flex;"><span>$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
|
||||
</span></span><span style="display:flex;"><span>1879
|
||||
</span></span><span style="display:flex;"><span>$ wc -l /tmp/2021-10-01-affiliations.txt
|
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</span></span><span style="display:flex;"><span>7100 /tmp/2021-10-01-affiliations.txt
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>So we have 1879/7100 (26.46%) matching already</li>
|
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</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2021-10/'>Read more →</a>
|
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</article>
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<nav class="blog-pagination">
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@ -384,6 +373,8 @@
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<ol class="list-unstyled">
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||||
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||||
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
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<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
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@ -392,8 +383,6 @@
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<li><a href="/cgspace-notes/2022-04/">April, 2022</a></li>
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<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
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</ol>
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</section>
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@ -6,7 +6,19 @@
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<description>Recent content in Notes on CGSpace Notes</description>
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<generator>Hugo -- gohugo.io</generator>
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<language>en-us</language>
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<lastBuildDate>Sat, 02 Jul 2022 14:07:36 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
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<lastBuildDate>Mon, 01 Aug 2022 10:22:36 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/categories/notes/index.xml" rel="self" type="application/rss+xml" />
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<item>
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<title>August, 2022</title>
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<link>https://alanorth.github.io/cgspace-notes/2022-08/</link>
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<pubDate>Mon, 01 Aug 2022 10:22:36 +0300</pubDate>
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<guid>https://alanorth.github.io/cgspace-notes/2022-08/</guid>
|
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<description><h2 id="2022-08-01">2022-08-01</h2>
|
||||
<ul>
|
||||
<li>Our request to add <a href="https://github.com/spdx/license-list-XML/issues/1525">CC-BY-3.0-IGO to SPDX</a> was approved a few weeks ago</li>
|
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</ul></description>
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</item>
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<item>
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<title>July, 2022</title>
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<link>https://alanorth.github.io/cgspace-notes/2022-07/</link>
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||||
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||||
@ -10,7 +10,7 @@
|
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||
<meta property="og:updated_time" content="2022-07-28T16:55:36+03:00" />
|
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<meta property="og:updated_time" content="2022-08-01T10:22:36+03:00" />
|
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|
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|
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@ -31,7 +31,7 @@
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<!-- combined, minified CSS -->
|
||||
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.beb8012edc08ba10be012f079d618dc243812267efe62e11f22fe49618f976a4.css" rel="stylesheet" integrity="sha256-vrgBLtwIuhC+AS8HnWGNwkOBImfv5i4R8i/klhj5dqQ=" crossorigin="anonymous">
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F+GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous">
|
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|
||||
|
||||
<!-- minified Font Awesome for SVG icons -->
|
||||
@ -81,6 +81,38 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-10/">October, 2021</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2021-10-01T11:14:07+03:00">Fri Oct 01, 2021</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2021-10-01">2021-10-01</h2>
|
||||
<ul>
|
||||
<li>Export all affiliations on CGSpace and run them against the latest RoR data dump:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspace63= > \COPY (SELECT DISTINCT text_value as "cg.contributor.affiliation", count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-10-01-affiliations.csv WITH CSV HEADER;
|
||||
</span></span><span style="display:flex;"><span>$ csvcut -c <span style="color:#ae81ff">1</span> /tmp/2021-10-01-affiliations.csv | sed 1d > /tmp/2021-10-01-affiliations.txt
|
||||
</span></span><span style="display:flex;"><span>$ ./ilri/ror-lookup.py -i /tmp/2021-10-01-affiliations.txt -r 2021-09-23-ror-data.json -o /tmp/2021-10-01-affili
|
||||
</span></span><span style="display:flex;"><span>ations-matching.csv
|
||||
</span></span><span style="display:flex;"><span>$ csvgrep -c matched -m true /tmp/2021-10-01-affiliations-matching.csv | sed 1d | wc -l
|
||||
</span></span><span style="display:flex;"><span>1879
|
||||
</span></span><span style="display:flex;"><span>$ wc -l /tmp/2021-10-01-affiliations.txt
|
||||
</span></span><span style="display:flex;"><span>7100 /tmp/2021-10-01-affiliations.txt
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>So we have 1879/7100 (26.46%) matching already</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2021-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-09/">September, 2021</a></h2>
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@ -333,40 +365,6 @@
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||||
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||||
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||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2021-01-03T10:13:54+02:00">Sun Jan 03, 2021</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
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</p>
|
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</header>
|
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<h2 id="2021-01-03">2021-01-03</h2>
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||||
<ul>
|
||||
<li>Peter notified me that some filters on AReS were broken again
|
||||
<ul>
|
||||
<li>It’s the same issue with the field names getting <code>.keyword</code> appended to the end that I already <a href="https://github.com/ilri/OpenRXV/issues/66">filed an issue on OpenRXV about last month</a></li>
|
||||
<li>I fixed the broken filters (careful to not edit any others, lest they break too!)</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV
|
||||
<ul>
|
||||
<li>The start page had been “1” in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API</li>
|
||||
<li>I adjusted it to default to 0 and added a note to the admin screen</li>
|
||||
<li>I realized that this issue was actually causing the first page of 100 statistics to be missing…</li>
|
||||
<li>For example, <a href="https://cgspace.cgiar.org/handle/10568/66839">this item</a> has 51 views on CGSpace, but 0 on AReS</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2021-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
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|
||||
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||||
<nav class="blog-pagination">
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||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/" rel="prev" role="button">Previous page</a>
|
||||
@ -391,6 +389,8 @@
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||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
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||||
|
||||
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
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<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
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||||
@ -399,8 +399,6 @@
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<li><a href="/cgspace-notes/2022-04/">April, 2022</a></li>
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<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
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||||
|
||||
</ol>
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||||
</section>
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||||
|
||||
|
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@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||
<meta property="og:updated_time" content="2022-07-28T16:55:36+03:00" />
|
||||
<meta property="og:updated_time" content="2022-08-01T10:22:36+03:00" />
|
||||
|
||||
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
|
||||
<!-- combined, minified CSS -->
|
||||
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.beb8012edc08ba10be012f079d618dc243812267efe62e11f22fe49618f976a4.css" rel="stylesheet" integrity="sha256-vrgBLtwIuhC+AS8HnWGNwkOBImfv5i4R8i/klhj5dqQ=" crossorigin="anonymous">
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F+GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous">
|
||||
|
||||
|
||||
<!-- minified Font Awesome for SVG icons -->
|
||||
@ -81,6 +81,40 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-01/">January, 2021</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2021-01-03T10:13:54+02:00">Sun Jan 03, 2021</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2021-01-03">2021-01-03</h2>
|
||||
<ul>
|
||||
<li>Peter notified me that some filters on AReS were broken again
|
||||
<ul>
|
||||
<li>It’s the same issue with the field names getting <code>.keyword</code> appended to the end that I already <a href="https://github.com/ilri/OpenRXV/issues/66">filed an issue on OpenRXV about last month</a></li>
|
||||
<li>I fixed the broken filters (careful to not edit any others, lest they break too!)</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>Fix an issue with start page number for the DSpace REST API and statistics API in OpenRXV
|
||||
<ul>
|
||||
<li>The start page had been “1” in the UI, but in the backend they were doing some gymnastics to adjust to the zero-based offset/limit/page of the DSpace REST API and the statistics API</li>
|
||||
<li>I adjusted it to default to 0 and added a note to the admin screen</li>
|
||||
<li>I realized that this issue was actually causing the first page of 100 statistics to be missing…</li>
|
||||
<li>For example, <a href="https://cgspace.cgiar.org/handle/10568/66839">this item</a> has 51 views on CGSpace, but 0 on AReS</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2021-01/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
|
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@ -324,39 +358,6 @@
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<article class="blog-post">
|
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<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2020-04-02T10:53:24+03:00">Thu Apr 02, 2020</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
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</p>
|
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</header>
|
||||
<h2 id="2020-04-02">2020-04-02</h2>
|
||||
<ul>
|
||||
<li>Maria asked me to update Charles Staver’s ORCID iD in the submission template and on CGSpace, as his name was lower case before, and now he has corrected it
|
||||
<ul>
|
||||
<li>I updated the fifty-eight existing items on CGSpace</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>Looking into the items Udana had asked about last week that were missing Altmetric donuts:
|
||||
<ul>
|
||||
<li><a href="https://hdl.handle.net/10568/103225">The first</a> is still missing its DOI, so I added it and <a href="https://twitter.com/mralanorth/status/1245632619661766657">tweeted its handle</a> (after a few hours there was a donut with score 222)</li>
|
||||
<li><a href="https://hdl.handle.net/10568/106899">The second item</a> now has a donut with score 2 since I <a href="https://twitter.com/mralanorth/status/1243158045540134913">tweeted its handle</a> last week</li>
|
||||
<li><a href="https://hdl.handle.net/10568/107258">The third item</a> now has a donut with score 1 since I <a href="https://twitter.com/mralanorth/status/1243158786392625153">tweeted it</a> last week</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>On the same note, the <a href="https://hdl.handle.net/10568/106573">one item</a> Abenet pointed out last week now has a donut with score of 104 after I <a href="https://twitter.com/mralanorth/status/1243163710241345536">tweeted it</a> last week</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2020-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/2/" rel="prev" role="button">Previous page</a>
|
||||
@ -381,6 +382,8 @@
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
|
||||
@ -389,8 +392,6 @@
|
||||
|
||||
<li><a href="/cgspace-notes/2022-04/">April, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||
<meta property="og:updated_time" content="2022-07-28T16:55:36+03:00" />
|
||||
<meta property="og:updated_time" content="2022-08-01T10:22:36+03:00" />
|
||||
|
||||
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
|
||||
<!-- combined, minified CSS -->
|
||||
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.beb8012edc08ba10be012f079d618dc243812267efe62e11f22fe49618f976a4.css" rel="stylesheet" integrity="sha256-vrgBLtwIuhC+AS8HnWGNwkOBImfv5i4R8i/klhj5dqQ=" crossorigin="anonymous">
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F+GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous">
|
||||
|
||||
|
||||
<!-- minified Font Awesome for SVG icons -->
|
||||
@ -81,6 +81,39 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-04/">April, 2020</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2020-04-02T10:53:24+03:00">Thu Apr 02, 2020</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2020-04-02">2020-04-02</h2>
|
||||
<ul>
|
||||
<li>Maria asked me to update Charles Staver’s ORCID iD in the submission template and on CGSpace, as his name was lower case before, and now he has corrected it
|
||||
<ul>
|
||||
<li>I updated the fifty-eight existing items on CGSpace</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>Looking into the items Udana had asked about last week that were missing Altmetric donuts:
|
||||
<ul>
|
||||
<li><a href="https://hdl.handle.net/10568/103225">The first</a> is still missing its DOI, so I added it and <a href="https://twitter.com/mralanorth/status/1245632619661766657">tweeted its handle</a> (after a few hours there was a donut with score 222)</li>
|
||||
<li><a href="https://hdl.handle.net/10568/106899">The second item</a> now has a donut with score 2 since I <a href="https://twitter.com/mralanorth/status/1243158045540134913">tweeted its handle</a> last week</li>
|
||||
<li><a href="https://hdl.handle.net/10568/107258">The third item</a> now has a donut with score 1 since I <a href="https://twitter.com/mralanorth/status/1243158786392625153">tweeted it</a> last week</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>On the same note, the <a href="https://hdl.handle.net/10568/106573">one item</a> Abenet pointed out last week now has a donut with score of 104 after I <a href="https://twitter.com/mralanorth/status/1243163710241345536">tweeted it</a> last week</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2020-04/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
|
||||
@ -368,32 +401,6 @@
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2019-06-02T10:57:51+03:00">Sun Jun 02, 2019</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2019-06-02">2019-06-02</h2>
|
||||
<ul>
|
||||
<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
|
||||
<li>Run system updates on CGSpace (linode18) and reboot it</li>
|
||||
</ul>
|
||||
<h2 id="2019-06-03">2019-06-03</h2>
|
||||
<ul>
|
||||
<li>Skype with Marie-Angélique and Abenet about <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2</a></li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2019-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/3/" rel="prev" role="button">Previous page</a>
|
||||
@ -418,6 +425,8 @@
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
|
||||
@ -426,8 +435,6 @@
|
||||
|
||||
<li><a href="/cgspace-notes/2022-04/">April, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||
<meta property="og:updated_time" content="2022-07-28T16:55:36+03:00" />
|
||||
<meta property="og:updated_time" content="2022-08-01T10:22:36+03:00" />
|
||||
|
||||
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
|
||||
<!-- combined, minified CSS -->
|
||||
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.beb8012edc08ba10be012f079d618dc243812267efe62e11f22fe49618f976a4.css" rel="stylesheet" integrity="sha256-vrgBLtwIuhC+AS8HnWGNwkOBImfv5i4R8i/klhj5dqQ=" crossorigin="anonymous">
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F+GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous">
|
||||
|
||||
|
||||
<!-- minified Font Awesome for SVG icons -->
|
||||
@ -81,6 +81,32 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-06/">June, 2019</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2019-06-02T10:57:51+03:00">Sun Jun 02, 2019</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2019-06-02">2019-06-02</h2>
|
||||
<ul>
|
||||
<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
|
||||
<li>Run system updates on CGSpace (linode18) and reboot it</li>
|
||||
</ul>
|
||||
<h2 id="2019-06-03">2019-06-03</h2>
|
||||
<ul>
|
||||
<li>Skype with Marie-Angélique and Abenet about <a href="https://agriculturalsemantics.github.io/cg-core/cgcore.html">CG Core v2</a></li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2019-06/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
|
||||
@ -365,38 +391,6 @@ sys 0m1.979s
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-08-01">2018-08-01</h2>
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre><ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat’s</li>
|
||||
<li>I’m not sure why Tomcat didn’t crash with an OutOfMemoryError…</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/4/" rel="prev" role="button">Previous page</a>
|
||||
@ -421,6 +415,8 @@ sys 0m1.979s
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
|
||||
@ -429,8 +425,6 @@ sys 0m1.979s
|
||||
|
||||
<li><a href="/cgspace-notes/2022-04/">April, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||
<meta property="og:updated_time" content="2022-07-28T16:55:36+03:00" />
|
||||
<meta property="og:updated_time" content="2022-08-01T10:22:36+03:00" />
|
||||
|
||||
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
|
||||
<!-- combined, minified CSS -->
|
||||
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.beb8012edc08ba10be012f079d618dc243812267efe62e11f22fe49618f976a4.css" rel="stylesheet" integrity="sha256-vrgBLtwIuhC+AS8HnWGNwkOBImfv5i4R8i/klhj5dqQ=" crossorigin="anonymous">
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F+GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous">
|
||||
|
||||
|
||||
<!-- minified Font Awesome for SVG icons -->
|
||||
@ -81,6 +81,38 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2018-08-01T11:52:54+03:00">Wed Aug 01, 2018</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2018-08-01">2018-08-01</h2>
|
||||
<ul>
|
||||
<li>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
|
||||
[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
|
||||
[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
|
||||
</code></pre><ul>
|
||||
<li>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</li>
|
||||
<li>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat’s</li>
|
||||
<li>I’m not sure why Tomcat didn’t crash with an OutOfMemoryError…</li>
|
||||
<li>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</li>
|
||||
<li>The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes</li>
|
||||
<li>I ran all system updates on DSpace Test and rebooted it</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
|
||||
@ -381,32 +413,6 @@ COPY 54701
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre><ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<nav class="blog-pagination">
|
||||
|
||||
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/notes/page/5/" rel="prev" role="button">Previous page</a>
|
||||
@ -431,6 +437,8 @@ COPY 54701
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
|
||||
@ -439,8 +447,6 @@ COPY 54701
|
||||
|
||||
<li><a href="/cgspace-notes/2022-04/">April, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||
<meta property="og:updated_time" content="2022-07-28T16:55:36+03:00" />
|
||||
<meta property="og:updated_time" content="2022-08-01T10:22:36+03:00" />
|
||||
|
||||
|
||||
|
||||
@ -31,7 +31,7 @@
|
||||
|
||||
<!-- combined, minified CSS -->
|
||||
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.beb8012edc08ba10be012f079d618dc243812267efe62e11f22fe49618f976a4.css" rel="stylesheet" integrity="sha256-vrgBLtwIuhC+AS8HnWGNwkOBImfv5i4R8i/klhj5dqQ=" crossorigin="anonymous">
|
||||
<link href="https://alanorth.github.io/cgspace-notes/css/style.c6ba80bc50669557645abe05f86b73cc5af84408ed20f1551a267bc19ece8228.css" rel="stylesheet" integrity="sha256-xrqAvFBmlVdkWr4F+GtzzFr4RAjtIPFVGiZ7wZ7Ogig=" crossorigin="anonymous">
|
||||
|
||||
|
||||
<!-- minified Font Awesome for SVG icons -->
|
||||
@ -81,6 +81,32 @@
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
|
||||
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54+03:00">Sun Oct 01, 2017</time> by Alan Orth in
|
||||
<span class="fas fa-folder" aria-hidden="true"></span> <a href="/categories/notes/" rel="category tag">Notes</a>
|
||||
|
||||
|
||||
</p>
|
||||
</header>
|
||||
<h2 id="2017-10-01">2017-10-01</h2>
|
||||
<ul>
|
||||
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
|
||||
</ul>
|
||||
<pre tabindex="0"><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
|
||||
</code></pre><ul>
|
||||
<li>There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
|
||||
<li>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</li>
|
||||
</ul>
|
||||
<a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
|
||||
</article>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<article class="blog-post">
|
||||
<header>
|
||||
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
|
||||
@ -124,6 +150,8 @@
|
||||
<ol class="list-unstyled">
|
||||
|
||||
|
||||
<li><a href="/cgspace-notes/2022-08/">August, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
|
||||
@ -132,8 +160,6 @@
|
||||
|
||||
<li><a href="/cgspace-notes/2022-04/">April, 2022</a></li>
|
||||
|
||||
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
|
||||
|
||||
</ol>
|
||||
</section>
|
||||
|
||||
|
||||
Reference in New Issue
Block a user