diff --git a/content/posts/2020-06.md b/content/posts/2020-06.md new file mode 100644 index 000000000..2c890180d --- /dev/null +++ b/content/posts/2020-06.md @@ -0,0 +1,41 @@ +--- +title: "June, 2020" +date: 2020-05-01T13:55:39+03:00 +author: "Alan Orth" +categories: ["Notes"] +--- + +## 2020-06-01 + +- I tried to run the `AtomicStatisticsUpdateCLI` CUA migration script on DSpace Test (linode26) again and it is still going very slowly and has tons of errors like I noticed yesterday + - I sent Atmire the dspace.log from today and told them to log into the server to debug the process +- In other news, I checked the statistics API on DSpace 6 and it's working +- I tried to build the OAI registry on the freshly migrated DSpace 6 on DSpace Test and I get an error: + + + +``` +$ dspace oai import -c +OAI 2.0 manager action started +Loading @mire database changes for module MQM +Changes have been processed +Clearing index +Index cleared +Using full import. +Full import +java.lang.NullPointerException + at org.dspace.xoai.app.XOAI.willChangeStatus(XOAI.java:438) + at org.dspace.xoai.app.XOAI.index(XOAI.java:368) + at org.dspace.xoai.app.XOAI.index(XOAI.java:280) + at org.dspace.xoai.app.XOAI.indexAll(XOAI.java:227) + at org.dspace.xoai.app.XOAI.index(XOAI.java:134) + at org.dspace.xoai.app.XOAI.main(XOAI.java:560) + at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) + at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) + at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) + at java.lang.reflect.Method.invoke(Method.java:498) + at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229) + at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81) +``` + + diff --git a/docs/2015-11/index.html b/docs/2015-11/index.html index 74dde7dfe..d01000d1c 100644 --- a/docs/2015-11/index.html +++ b/docs/2015-11/index.html @@ -241,14 +241,14 @@ db.statementpool = true
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    • - diff --git a/docs/2015-12/index.html b/docs/2015-12/index.html index 0d4f756f2..b5e317a43 100644 --- a/docs/2015-12/index.html +++ b/docs/2015-12/index.html @@ -263,14 +263,14 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
  • May, 2020
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    • - diff --git a/docs/2016-01/index.html b/docs/2016-01/index.html index 9299ec85c..07d096cda 100644 --- a/docs/2016-01/index.html +++ b/docs/2016-01/index.html @@ -199,14 +199,14 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
  • May, 2020
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    • - diff --git a/docs/2016-02/index.html b/docs/2016-02/index.html index 4d8e22707..c8d19c9e8 100644 --- a/docs/2016-02/index.html +++ b/docs/2016-02/index.html @@ -377,14 +377,14 @@ Bitstream: tést señora alimentación.pdf
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    • - diff --git a/docs/2016-03/index.html b/docs/2016-03/index.html index e64403067..e4ecaa423 100644 --- a/docs/2016-03/index.html +++ b/docs/2016-03/index.html @@ -315,14 +315,14 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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    • - diff --git a/docs/2016-04/index.html b/docs/2016-04/index.html index e8a5850ab..1dfd582ae 100644 --- a/docs/2016-04/index.html +++ b/docs/2016-04/index.html @@ -494,14 +494,14 @@ dspace.log.2016-04-27:7271
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    • - diff --git a/docs/2016-05/index.html b/docs/2016-05/index.html index 0dc2a825b..e756fe8dd 100644 --- a/docs/2016-05/index.html +++ b/docs/2016-05/index.html @@ -370,14 +370,14 @@ sys 0m20.540s
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    • - diff --git a/docs/2016-06/index.html b/docs/2016-06/index.html index b9413d378..f20505300 100644 --- a/docs/2016-06/index.html +++ b/docs/2016-06/index.html @@ -408,14 +408,14 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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    • - diff --git a/docs/2016-07/index.html b/docs/2016-07/index.html index 6e6435445..69f2c108f 100644 --- a/docs/2016-07/index.html +++ b/docs/2016-07/index.html @@ -324,14 +324,14 @@ discovery.index.authority.ignore-variants=true
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    • - diff --git a/docs/2016-08/index.html b/docs/2016-08/index.html index 06d3b19aa..73cfabc43 100644 --- a/docs/2016-08/index.html +++ b/docs/2016-08/index.html @@ -388,14 +388,14 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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    • - diff --git a/docs/2016-09/index.html b/docs/2016-09/index.html index 6f43571ff..105ff627b 100644 --- a/docs/2016-09/index.html +++ b/docs/2016-09/index.html @@ -605,14 +605,14 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
  • May, 2020
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    • - diff --git a/docs/2016-10/index.html b/docs/2016-10/index.html index ef5fda74b..427f61c3c 100644 --- a/docs/2016-10/index.html +++ b/docs/2016-10/index.html @@ -371,14 +371,14 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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    • - diff --git a/docs/2016-11/index.html b/docs/2016-11/index.html index 6af0a64a8..0b48453ba 100644 --- a/docs/2016-11/index.html +++ b/docs/2016-11/index.html @@ -547,14 +547,14 @@ org.dspace.discovery.SearchServiceException: Error executing query
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    • - diff --git a/docs/2016-12/index.html b/docs/2016-12/index.html index 58e8dc81f..90ae82a3d 100644 --- a/docs/2016-12/index.html +++ b/docs/2016-12/index.html @@ -783,14 +783,14 @@ $ exit
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    • - diff --git a/docs/2017-01/index.html b/docs/2017-01/index.html index 33ef20cfb..3c08a753a 100644 --- a/docs/2017-01/index.html +++ b/docs/2017-01/index.html @@ -368,14 +368,14 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
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    • - diff --git a/docs/2017-02/index.html b/docs/2017-02/index.html index 48896f16f..3dadb3f78 100644 --- a/docs/2017-02/index.html +++ b/docs/2017-02/index.html @@ -423,14 +423,14 @@ COPY 1968
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    • - diff --git a/docs/2017-03/index.html b/docs/2017-03/index.html index cd5b562e5..722a12eb9 100644 --- a/docs/2017-03/index.html +++ b/docs/2017-03/index.html @@ -354,14 +354,14 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
  • May, 2020
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    • - diff --git a/docs/2017-04/index.html b/docs/2017-04/index.html index cca7d5038..690edfdc1 100644 --- a/docs/2017-04/index.html +++ b/docs/2017-04/index.html @@ -584,14 +584,14 @@ $ gem install compass -v 1.0.3
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    • - diff --git a/docs/2017-05/index.html b/docs/2017-05/index.html index e7752d9ed..46a2db966 100644 --- a/docs/2017-05/index.html +++ b/docs/2017-05/index.html @@ -390,14 +390,14 @@ UPDATE 187
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    • - diff --git a/docs/2017-06/index.html b/docs/2017-06/index.html index f095b0c3b..4854c4521 100644 --- a/docs/2017-06/index.html +++ b/docs/2017-06/index.html @@ -269,14 +269,14 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
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    • - diff --git a/docs/2017-07/index.html b/docs/2017-07/index.html index 40bc57d65..e5d97866d 100644 --- a/docs/2017-07/index.html +++ b/docs/2017-07/index.html @@ -274,14 +274,14 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
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    • - diff --git a/docs/2017-08/index.html b/docs/2017-08/index.html index 05dabe264..bc1d6e54c 100644 --- a/docs/2017-08/index.html +++ b/docs/2017-08/index.html @@ -516,14 +516,14 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
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    • - diff --git a/docs/2017-09/index.html b/docs/2017-09/index.html index fe184b888..f9a031518 100644 --- a/docs/2017-09/index.html +++ b/docs/2017-09/index.html @@ -658,14 +658,14 @@ Cert Status: good
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    • - diff --git a/docs/2017-10/index.html b/docs/2017-10/index.html index 93de24818..766e949f8 100644 --- a/docs/2017-10/index.html +++ b/docs/2017-10/index.html @@ -442,14 +442,14 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
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    • - diff --git a/docs/2017-11/index.html b/docs/2017-11/index.html index 27608bbb3..6604b9e9c 100644 --- a/docs/2017-11/index.html +++ b/docs/2017-11/index.html @@ -943,14 +943,14 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
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    • - diff --git a/docs/2017-12/index.html b/docs/2017-12/index.html index 4cadfe2f6..0603a296f 100644 --- a/docs/2017-12/index.html +++ b/docs/2017-12/index.html @@ -782,14 +782,14 @@ DELETE 20
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    • - diff --git a/docs/2018-01/index.html b/docs/2018-01/index.html index 01b91c7b4..762e44e57 100644 --- a/docs/2018-01/index.html +++ b/docs/2018-01/index.html @@ -1451,14 +1451,14 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
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    • - diff --git a/docs/2018-02/index.html b/docs/2018-02/index.html index 1dbb3ab67..8f44e4ed4 100644 --- a/docs/2018-02/index.html +++ b/docs/2018-02/index.html @@ -1038,14 +1038,14 @@ UPDATE 3
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    • - diff --git a/docs/2018-03/index.html b/docs/2018-03/index.html index 8ce07f078..b9fbf9b23 100644 --- a/docs/2018-03/index.html +++ b/docs/2018-03/index.html @@ -584,14 +584,14 @@ Fixed 5 occurences of: GENEBANKS
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    • - diff --git a/docs/2018-04/index.html b/docs/2018-04/index.html index f386ddd8d..f988b5594 100644 --- a/docs/2018-04/index.html +++ b/docs/2018-04/index.html @@ -593,14 +593,14 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
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    • - diff --git a/docs/2018-05/index.html b/docs/2018-05/index.html index a78412799..01d1bc3ab 100644 --- a/docs/2018-05/index.html +++ b/docs/2018-05/index.html @@ -522,14 +522,14 @@ $ psql -h localhost -U postgres dspacetest
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    • - diff --git a/docs/2018-06/index.html b/docs/2018-06/index.html index 38449da05..144684ab9 100644 --- a/docs/2018-06/index.html +++ b/docs/2018-06/index.html @@ -516,14 +516,14 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
  • May, 2020
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    • - diff --git a/docs/2018-07/index.html b/docs/2018-07/index.html index 1f794dcc6..c02cf79d7 100644 --- a/docs/2018-07/index.html +++ b/docs/2018-07/index.html @@ -568,14 +568,14 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
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    • - diff --git a/docs/2018-08/index.html b/docs/2018-08/index.html index 5812fff5e..de940a4fa 100644 --- a/docs/2018-08/index.html +++ b/docs/2018-08/index.html @@ -441,14 +441,14 @@ $ dspace database migrate ignored
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    • - diff --git a/docs/2018-09/index.html b/docs/2018-09/index.html index 9c0c5935b..2b7b073c2 100644 --- a/docs/2018-09/index.html +++ b/docs/2018-09/index.html @@ -747,14 +747,14 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
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    • - diff --git a/docs/2018-10/index.html b/docs/2018-10/index.html index 2594cded5..316c844e0 100644 --- a/docs/2018-10/index.html +++ b/docs/2018-10/index.html @@ -655,14 +655,14 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
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    • - diff --git a/docs/2018-11/index.html b/docs/2018-11/index.html index 95c7c1eb0..5dcfb41e1 100644 --- a/docs/2018-11/index.html +++ b/docs/2018-11/index.html @@ -552,14 +552,14 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
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    • - diff --git a/docs/2018-12/index.html b/docs/2018-12/index.html index 4a5226f2d..053f66955 100644 --- a/docs/2018-12/index.html +++ b/docs/2018-12/index.html @@ -593,14 +593,14 @@ UPDATE 1
  • May, 2020
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    • - diff --git a/docs/2019-01/index.html b/docs/2019-01/index.html index 3912948b3..36ddeaa9c 100644 --- a/docs/2019-01/index.html +++ b/docs/2019-01/index.html @@ -1263,14 +1263,14 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
  • May, 2020
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    • - diff --git a/docs/2019-02/index.html b/docs/2019-02/index.html index 3bc4b48ae..0febdf66a 100644 --- a/docs/2019-02/index.html +++ b/docs/2019-02/index.html @@ -1343,14 +1343,14 @@ Please see the DSpace documentation for assistance.
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    • - diff --git a/docs/2019-03/index.html b/docs/2019-03/index.html index 52d01b8d9..311983616 100644 --- a/docs/2019-03/index.html +++ b/docs/2019-03/index.html @@ -1207,14 +1207,14 @@ sys 0m2.551s
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    • - diff --git a/docs/2019-04/index.html b/docs/2019-04/index.html index 26374fb49..a1723193f 100644 --- a/docs/2019-04/index.html +++ b/docs/2019-04/index.html @@ -1298,14 +1298,14 @@ UPDATE 14
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    • - diff --git a/docs/2019-05/index.html b/docs/2019-05/index.html index ca4e37466..2aae3f60b 100644 --- a/docs/2019-05/index.html +++ b/docs/2019-05/index.html @@ -630,14 +630,14 @@ COPY 64871
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    • - diff --git a/docs/2019-06/index.html b/docs/2019-06/index.html index 3b16c8e10..9930de79e 100644 --- a/docs/2019-06/index.html +++ b/docs/2019-06/index.html @@ -316,14 +316,14 @@ UPDATE 2
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    • - diff --git a/docs/2019-07/index.html b/docs/2019-07/index.html index 926a59b13..9bd7c00c1 100644 --- a/docs/2019-07/index.html +++ b/docs/2019-07/index.html @@ -553,14 +553,14 @@ issn.validate('1020-3362')
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    • - diff --git a/docs/2019-08/index.html b/docs/2019-08/index.html index 00e8a8ac7..c3e550fa6 100644 --- a/docs/2019-08/index.html +++ b/docs/2019-08/index.html @@ -572,14 +572,14 @@ sys 2m27.496s
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    • - diff --git a/docs/2019-09/index.html b/docs/2019-09/index.html index b6a4f3877..0859fb9a6 100644 --- a/docs/2019-09/index.html +++ b/docs/2019-09/index.html @@ -580,14 +580,14 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
  • May, 2020
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    • - diff --git a/docs/2019-10/index.html b/docs/2019-10/index.html index 48e063d1b..9b64ff215 100644 --- a/docs/2019-10/index.html +++ b/docs/2019-10/index.html @@ -384,14 +384,14 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
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    • - diff --git a/docs/2019-11/index.html b/docs/2019-11/index.html index 1f82ea8bb..38a80d440 100644 --- a/docs/2019-11/index.html +++ b/docs/2019-11/index.html @@ -691,14 +691,14 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
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    • - diff --git a/docs/2019-12/index.html b/docs/2019-12/index.html index ed7fea399..55b58ec02 100644 --- a/docs/2019-12/index.html +++ b/docs/2019-12/index.html @@ -403,14 +403,14 @@ UPDATE 1
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    • - diff --git a/docs/2020-01/index.html b/docs/2020-01/index.html index 4afe84dfe..c2525b40f 100644 --- a/docs/2020-01/index.html +++ b/docs/2020-01/index.html @@ -603,14 +603,14 @@ COPY 2900
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    • - diff --git a/docs/2020-02/index.html b/docs/2020-02/index.html index 9faed4bbf..76cd1bf14 100644 --- a/docs/2020-02/index.html +++ b/docs/2020-02/index.html @@ -1274,14 +1274,14 @@ Moving: 21993 into core statistics-2019
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    • - diff --git a/docs/2020-03/index.html b/docs/2020-03/index.html index 3797ff046..44a13b82f 100644 --- a/docs/2020-03/index.html +++ b/docs/2020-03/index.html @@ -483,14 +483,14 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
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    • - diff --git a/docs/2020-05/index.html b/docs/2020-05/index.html index 6d3b4e3d0..6f7225147 100644 --- a/docs/2020-05/index.html +++ b/docs/2020-05/index.html @@ -18,7 +18,7 @@ I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2 - + @@ -43,7 +43,7 @@ I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2 "url": "https://alanorth.github.io/cgspace-notes/2020-05/", "wordCount": "2154", "datePublished": "2020-05-02T09:52:04+03:00", - "dateModified": "2020-05-31T20:49:41+03:00", + "dateModified": "2020-06-01T13:55:08+03:00", "author": { "@type": "Person", "name": "Alan Orth" @@ -476,14 +476,14 @@ Caused by: java.lang.NullPointerException
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    +
    +

    June, 2020

    +

    by Alan Orth in + Notes + + +

    +
    +

    2020-06-01

    + + Read more → +
    + + + + + +

    April, 2020

    @@ -357,51 +384,6 @@ - -
    -
    -

    September, 2019

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    by Alan Orth in - Notes - - -

    -
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    2019-09-01

    -
      -
    • Linode emailed to say that CGSpace (linode18) had a high rate of outbound traffic for several hours this morning
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    • Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
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    # zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 | grep -E "01/Sep/2019:0" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
-    440 17.58.101.255
-    441 157.55.39.101
-    485 207.46.13.43
-    728 169.60.128.125
-    730 207.46.13.108
-    758 157.55.39.9
-    808 66.160.140.179
-    814 207.46.13.212
-   2472 163.172.71.23
-   6092 3.94.211.189
-# zcat --force /var/log/nginx/rest.log /var/log/nginx/rest.log.1 /var/log/nginx/oai.log /var/log/nginx/oai.log.1 | grep -E "01/Sep/2019:0" | awk '{print $1}' | sort | uniq -c | sort -n | tail -n 10
-     33 2a01:7e00::f03c:91ff:fe16:fcb
-     57 3.83.192.124
-     57 3.87.77.25
-     57 54.82.1.8
-    822 2a01:9cc0:47:1:1a:4:0:2
-   1223 45.5.184.72
-   1633 172.104.229.92
-   5112 205.186.128.185
-   7249 2a01:7e00::f03c:91ff:fe18:7396
-   9124 45.5.186.2
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    - Read more → -
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