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Alan Orth 2023-02-15 19:47:13 +03:00
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content/posts/2023-02.md
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@ -148,4 +148,58 @@ value.replace("Jan","01").replace("Feb","02").replace("Mar","03").replace("Apr",
- I checked cgiar.org, ifpri.org, icarda.org, iwmi.cgiar.org, irri.org, etc and corrected a handful
- Start a harvest on AReS
## 2023-02-15
- Work on rebasing my local DSpace 7 dev branches on top of the latest 7.5-SNAPSHOT
- It seems the issues I had with the `dspace submission-forms-migrate` tool in [August, 2022]({{< relref "2022-08.md" >}}) were fixed
- I imported a fresh PostgreSQL snapshot from CGSpace and then removed the Atmire migrations and ran the new migrations as I originally noted in [March, 2022]({{< relref "2022-03.md" >}}), and is pointed out in the [DSpace 7 upgrade notes](https://wiki.lyrasis.org/display/DSDOC7x/Upgrading+DSpace)
- Now I get a new error:
```console
localhost/dspace7= ☘ DELETE FROM schema_version WHERE version IN ('5.0.2017.09.25', '6.0.2017.01.30', '6.0.2017.09.25');
localhost/dspace7= ☘ DELETE FROM schema_version WHERE description LIKE '%Atmire%' OR description LIKE '%CUA%' OR description LIKE '%cua%';
localhost/dspace7= \q
$ ./bin/dspace database migrate ignored
...
CREATE INDEX resourcepolicy_action_idx ON resourcepolicy(action_id)
at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.handleException(DefaultSqlScriptExecutor.java:275)
at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.executeStatement(DefaultSqlScriptExecutor.java:222)
at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.execute(DefaultSqlScriptExecutor.java:126)
at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.executeOnce(SqlMigrationExecutor.java:69)
at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.lambda$execute$0(SqlMigrationExecutor.java:58)
at org.flywaydb.core.internal.database.DefaultExecutionStrategy.execute(DefaultExecutionStrategy.java:27)
at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.execute(SqlMigrationExecutor.java:57)
at org.flywaydb.core.internal.command.DbMigrate.doMigrateGroup(DbMigrate.java:377)
... 24 more
Caused by: org.postgresql.util.PSQLException: ERROR: relation "resourcepolicy_action_idx" already exists
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2676)
at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2366)
at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:356)
at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:496)
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:413)
at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:333)
at org.postgresql.jdbc.PgStatement.executeCachedSql(PgStatement.java:319)
at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:295)
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:290)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:193)
at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:193)
at org.flywaydb.core.internal.jdbc.JdbcTemplate.executeStatement(JdbcTemplate.java:201)
at org.flywaydb.core.internal.sqlscript.ParsedSqlStatement.execute(ParsedSqlStatement.java:95)
at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.executeStatement(DefaultSqlScriptExecutor.java:210)
... 30 more
```
- I dropped that index and then the migration succeeded:
```console
localhost/dspace7= ☘ DROP INDEX resourcepolicy_action_idx;
localhost/dspace7= ☘ \q
$ ./bin/dspace database migrate ignored
Done.
```
- I think that particular error is because I applied the [indexes in this unmerged DSpace 6 patch](https://github.com/DSpace/DSpace/pull/1792), so I don't need to report this as an error in DSpace 7
<!-- vim: set sw=2 ts=2: -->

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@ -18,7 +18,7 @@ I want to try to expand my use of their data to journals, publishers, volumes, i
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-02/" />
<meta property="article:published_time" content="2023-02-01T10:57:36+03:00" />
<meta property="article:modified_time" content="2023-02-13T10:33:16+03:00" />
<meta property="article:modified_time" content="2023-02-14T23:13:35+03:00" />
@ -42,9 +42,9 @@ I want to try to expand my use of their data to journals, publishers, volumes, i
"@type": "BlogPosting",
"headline": "February, 2023",
"url": "https://alanorth.github.io/cgspace-notes/2023-02/",
"wordCount": "1019",
"wordCount": "1245",
"datePublished": "2023-02-01T10:57:36+03:00",
"dateModified": "2023-02-13T10:33:16+03:00",
"dateModified": "2023-02-14T23:13:35+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -284,6 +284,62 @@ I want to try to expand my use of their data to journals, publishers, volumes, i
</li>
<li>Start a harvest on AReS</li>
</ul>
<h2 id="2023-02-15">2023-02-15</h2>
<ul>
<li>Work on rebasing my local DSpace 7 dev branches on top of the latest 7.5-SNAPSHOT
<ul>
<li>It seems the issues I had with the <code>dspace submission-forms-migrate</code> tool in <a href="/cgspace-notes/2022-08/">August, 2022</a> were fixed</li>
</ul>
</li>
<li>I imported a fresh PostgreSQL snapshot from CGSpace and then removed the Atmire migrations and ran the new migrations as I originally noted in <a href="/cgspace-notes/2022-03/">March, 2022</a>, and is pointed out in the <a href="https://wiki.lyrasis.org/display/DSDOC7x/Upgrading+DSpace">DSpace 7 upgrade notes</a>
<ul>
<li>Now I get a new error:</li>
</ul>
</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspace7= ☘ DELETE FROM schema_version WHERE version IN (&#39;5.0.2017.09.25&#39;, &#39;6.0.2017.01.30&#39;, &#39;6.0.2017.09.25&#39;);
</span></span><span style="display:flex;"><span>localhost/dspace7= ☘ DELETE FROM schema_version WHERE description LIKE &#39;%Atmire%&#39; OR description LIKE &#39;%CUA%&#39; OR description LIKE &#39;%cua%&#39;;
</span></span><span style="display:flex;"><span>localhost/dspace7= \q
</span></span><span style="display:flex;"><span>$ ./bin/dspace database migrate ignored
</span></span><span style="display:flex;"><span>...
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>CREATE INDEX resourcepolicy_action_idx ON resourcepolicy(action_id)
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span> at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.handleException(DefaultSqlScriptExecutor.java:275)
</span></span><span style="display:flex;"><span> at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.executeStatement(DefaultSqlScriptExecutor.java:222)
</span></span><span style="display:flex;"><span> at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.execute(DefaultSqlScriptExecutor.java:126)
</span></span><span style="display:flex;"><span> at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.executeOnce(SqlMigrationExecutor.java:69)
</span></span><span style="display:flex;"><span> at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.lambda$execute$0(SqlMigrationExecutor.java:58)
</span></span><span style="display:flex;"><span> at org.flywaydb.core.internal.database.DefaultExecutionStrategy.execute(DefaultExecutionStrategy.java:27)
</span></span><span style="display:flex;"><span> at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.execute(SqlMigrationExecutor.java:57)
</span></span><span style="display:flex;"><span> at org.flywaydb.core.internal.command.DbMigrate.doMigrateGroup(DbMigrate.java:377)
</span></span><span style="display:flex;"><span> ... 24 more
</span></span><span style="display:flex;"><span>Caused by: org.postgresql.util.PSQLException: ERROR: relation &#34;resourcepolicy_action_idx&#34; already exists
</span></span><span style="display:flex;"><span> at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2676)
</span></span><span style="display:flex;"><span> at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2366)
</span></span><span style="display:flex;"><span> at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:356)
</span></span><span style="display:flex;"><span> at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:496)
</span></span><span style="display:flex;"><span> at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:413)
</span></span><span style="display:flex;"><span> at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:333)
</span></span><span style="display:flex;"><span> at org.postgresql.jdbc.PgStatement.executeCachedSql(PgStatement.java:319)
</span></span><span style="display:flex;"><span> at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:295)
</span></span><span style="display:flex;"><span> at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:290)
</span></span><span style="display:flex;"><span> at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:193)
</span></span><span style="display:flex;"><span> at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:193)
</span></span><span style="display:flex;"><span> at org.flywaydb.core.internal.jdbc.JdbcTemplate.executeStatement(JdbcTemplate.java:201)
</span></span><span style="display:flex;"><span> at org.flywaydb.core.internal.sqlscript.ParsedSqlStatement.execute(ParsedSqlStatement.java:95)
</span></span><span style="display:flex;"><span> at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.executeStatement(DefaultSqlScriptExecutor.java:210)
</span></span><span style="display:flex;"><span> ... 30 more
</span></span></code></pre></div><ul>
<li>I dropped that index and then the migration succeeded:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspace7= ☘ DROP INDEX resourcepolicy_action_idx;
</span></span><span style="display:flex;"><span>localhost/dspace7= ☘ \q
</span></span><span style="display:flex;"><span>$ ./bin/dspace database migrate ignored
</span></span><span style="display:flex;"><span>Done.
</span></span></code></pre></div><ul>
<li>I think that particular error is because I applied the <a href="https://github.com/DSpace/DSpace/pull/1792">indexes in this unmerged DSpace 6 patch</a>, so I don&rsquo;t need to report this as an error in DSpace 7</li>
</ul>
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