Add notes for 2023-02-15

content/posts/2023-02.md

@@ -148,4 +148,58 @@ value.replace("Jan","01").replace("Feb","02").replace("Mar","03").replace("Apr",
   - I checked cgiar.org, ifpri.org, icarda.org, iwmi.cgiar.org, irri.org, etc and corrected a handful
 - Start a harvest on AReS
 
+## 2023-02-15
+
+- Work on rebasing my local DSpace 7 dev branches on top of the latest 7.5-SNAPSHOT
+  - It seems the issues I had with the `dspace submission-forms-migrate` tool in [August, 2022]({{< relref "2022-08.md" >}}) were fixed
+- I imported a fresh PostgreSQL snapshot from CGSpace and then removed the Atmire migrations and ran the new migrations as I originally noted in [March, 2022]({{< relref "2022-03.md" >}}), and is pointed out in the [DSpace 7 upgrade notes](https://wiki.lyrasis.org/display/DSDOC7x/Upgrading+DSpace)
+  - Now I get a new error:
+
+```console
+localhost/dspace7= ☘ DELETE FROM schema_version WHERE version IN ('5.0.2017.09.25', '6.0.2017.01.30', '6.0.2017.09.25');
+localhost/dspace7= ☘ DELETE FROM schema_version WHERE description LIKE '%Atmire%' OR description LIKE '%CUA%' OR description LIKE '%cua%';
+localhost/dspace7= \q
+$ ./bin/dspace database migrate ignored
+...
+
+CREATE INDEX resourcepolicy_action_idx ON resourcepolicy(action_id)
+
+        at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.handleException(DefaultSqlScriptExecutor.java:275)
+        at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.executeStatement(DefaultSqlScriptExecutor.java:222)
+        at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.execute(DefaultSqlScriptExecutor.java:126)
+        at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.executeOnce(SqlMigrationExecutor.java:69)
+        at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.lambda$execute$0(SqlMigrationExecutor.java:58)
+        at org.flywaydb.core.internal.database.DefaultExecutionStrategy.execute(DefaultExecutionStrategy.java:27)
+        at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.execute(SqlMigrationExecutor.java:57)
+        at org.flywaydb.core.internal.command.DbMigrate.doMigrateGroup(DbMigrate.java:377)
+        ... 24 more
+Caused by: org.postgresql.util.PSQLException: ERROR: relation "resourcepolicy_action_idx" already exists
+        at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2676)
+        at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2366)
+        at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:356)
+        at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:496)
+        at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:413)
+        at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:333)
+        at org.postgresql.jdbc.PgStatement.executeCachedSql(PgStatement.java:319)
+        at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:295)
+        at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:290)
+        at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:193)
+        at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:193)
+        at org.flywaydb.core.internal.jdbc.JdbcTemplate.executeStatement(JdbcTemplate.java:201)
+        at org.flywaydb.core.internal.sqlscript.ParsedSqlStatement.execute(ParsedSqlStatement.java:95)
+        at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.executeStatement(DefaultSqlScriptExecutor.java:210)
+        ... 30 more
+```
+
+- I dropped that index and then the migration succeeded:
+
+```console
+localhost/dspace7= ☘ DROP INDEX resourcepolicy_action_idx;
+localhost/dspace7= ☘ \q
+$ ./bin/dspace database migrate ignored
+Done.
+```
+
+- I think that particular error is because I applied the [indexes in this unmerged DSpace 6 patch](https://github.com/DSpace/DSpace/pull/1792), so I don't need to report this as an error in DSpace 7
+
 <!-- vim: set sw=2 ts=2: -->

docs/2023-02/index.html

@@ -18,7 +18,7 @@ I want to try to expand my use of their data to journals, publishers, volumes, i
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-02/" />
 <meta property="article:published_time" content="2023-02-01T10:57:36+03:00" />
-<meta property="article:modified_time" content="2023-02-13T10:33:16+03:00" />
+<meta property="article:modified_time" content="2023-02-14T23:13:35+03:00" />
 
 
 
@@ -42,9 +42,9 @@ I want to try to expand my use of their data to journals, publishers, volumes, i
   "@type": "BlogPosting",
   "headline": "February, 2023",
   "url": "https://alanorth.github.io/cgspace-notes/2023-02/",
-  "wordCount": "1019",
+  "wordCount": "1245",
   "datePublished": "2023-02-01T10:57:36+03:00",
-  "dateModified": "2023-02-13T10:33:16+03:00",
+  "dateModified": "2023-02-14T23:13:35+03:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -284,6 +284,62 @@ I want to try to expand my use of their data to journals, publishers, volumes, i
 </li>
 <li>Start a harvest on AReS</li>
 </ul>
+<h2 id="2023-02-15">2023-02-15</h2>
+<ul>
+<li>Work on rebasing my local DSpace 7 dev branches on top of the latest 7.5-SNAPSHOT
+<ul>
+<li>It seems the issues I had with the <code>dspace submission-forms-migrate</code> tool in <a href="/cgspace-notes/2022-08/">August, 2022</a> were fixed</li>
+</ul>
+</li>
+<li>I imported a fresh PostgreSQL snapshot from CGSpace and then removed the Atmire migrations and ran the new migrations as I originally noted in <a href="/cgspace-notes/2022-03/">March, 2022</a>, and is pointed out in the <a href="https://wiki.lyrasis.org/display/DSDOC7x/Upgrading+DSpace">DSpace 7 upgrade notes</a>
+<ul>
+<li>Now I get a new error:</li>
+</ul>
+</li>
+</ul>
+<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspace7= ☘ DELETE FROM schema_version WHERE version IN (&#39;5.0.2017.09.25&#39;, &#39;6.0.2017.01.30&#39;, &#39;6.0.2017.09.25&#39;);
+</span></span><span style="display:flex;"><span>localhost/dspace7= ☘ DELETE FROM schema_version WHERE description LIKE &#39;%Atmire%&#39; OR description LIKE &#39;%CUA%&#39; OR description LIKE &#39;%cua%&#39;;
+</span></span><span style="display:flex;"><span>localhost/dspace7= \q
+</span></span><span style="display:flex;"><span>$ ./bin/dspace database migrate ignored
+</span></span><span style="display:flex;"><span>...
+</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
+</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>CREATE INDEX resourcepolicy_action_idx ON resourcepolicy(action_id)
+</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
+</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>        at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.handleException(DefaultSqlScriptExecutor.java:275)
+</span></span><span style="display:flex;"><span>        at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.executeStatement(DefaultSqlScriptExecutor.java:222)
+</span></span><span style="display:flex;"><span>        at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.execute(DefaultSqlScriptExecutor.java:126)
+</span></span><span style="display:flex;"><span>        at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.executeOnce(SqlMigrationExecutor.java:69)
+</span></span><span style="display:flex;"><span>        at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.lambda$execute$0(SqlMigrationExecutor.java:58)
+</span></span><span style="display:flex;"><span>        at org.flywaydb.core.internal.database.DefaultExecutionStrategy.execute(DefaultExecutionStrategy.java:27)
+</span></span><span style="display:flex;"><span>        at org.flywaydb.core.internal.resolver.sql.SqlMigrationExecutor.execute(SqlMigrationExecutor.java:57)
+</span></span><span style="display:flex;"><span>        at org.flywaydb.core.internal.command.DbMigrate.doMigrateGroup(DbMigrate.java:377)
+</span></span><span style="display:flex;"><span>        ... 24 more
+</span></span><span style="display:flex;"><span>Caused by: org.postgresql.util.PSQLException: ERROR: relation &#34;resourcepolicy_action_idx&#34; already exists
+</span></span><span style="display:flex;"><span>        at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2676)
+</span></span><span style="display:flex;"><span>        at org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:2366)
+</span></span><span style="display:flex;"><span>        at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:356)
+</span></span><span style="display:flex;"><span>        at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:496)
+</span></span><span style="display:flex;"><span>        at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:413)
+</span></span><span style="display:flex;"><span>        at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:333)
+</span></span><span style="display:flex;"><span>        at org.postgresql.jdbc.PgStatement.executeCachedSql(PgStatement.java:319)
+</span></span><span style="display:flex;"><span>        at org.postgresql.jdbc.PgStatement.executeWithFlags(PgStatement.java:295)
+</span></span><span style="display:flex;"><span>        at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:290)
+</span></span><span style="display:flex;"><span>        at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:193)
+</span></span><span style="display:flex;"><span>        at org.apache.commons.dbcp2.DelegatingStatement.execute(DelegatingStatement.java:193)
+</span></span><span style="display:flex;"><span>        at org.flywaydb.core.internal.jdbc.JdbcTemplate.executeStatement(JdbcTemplate.java:201)
+</span></span><span style="display:flex;"><span>        at org.flywaydb.core.internal.sqlscript.ParsedSqlStatement.execute(ParsedSqlStatement.java:95)
+</span></span><span style="display:flex;"><span>        at org.flywaydb.core.internal.sqlscript.DefaultSqlScriptExecutor.executeStatement(DefaultSqlScriptExecutor.java:210)
+</span></span><span style="display:flex;"><span>        ... 30 more
+</span></span></code></pre></div><ul>
+<li>I dropped that index and then the migration succeeded:</li>
+</ul>
+<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspace7= ☘ DROP INDEX resourcepolicy_action_idx;
+</span></span><span style="display:flex;"><span>localhost/dspace7= ☘ \q
+</span></span><span style="display:flex;"><span>$ ./bin/dspace database migrate ignored
+</span></span><span style="display:flex;"><span>Done.
+</span></span></code></pre></div><ul>
+<li>I think that particular error is because I applied the <a href="https://github.com/DSpace/DSpace/pull/1792">indexes in this unmerged DSpace 6 patch</a>, so I don&rsquo;t need to report this as an error in DSpace 7</li>
+</ul>
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 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
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 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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docs/posts/page/6/index.html

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docs/posts/page/9/index.html

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