Add notes for 2022-02-14

This commit is contained in:
Alan Orth 2022-02-14 16:43:12 +03:00
parent e3109b7483
commit 9b4498de04
Signed by: alanorth
GPG Key ID: 0FB860CC9C45B1B9
26 changed files with 107 additions and 31 deletions

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@ -374,4 +374,42 @@ sys 3m2.459s
- Start a full harvest on AReS - Start a full harvest on AReS
## 2022-02-14
- Last week Gaia sent me her notes on the second batch of TAC/ICW documents (items 201400 in the spreadsheet)
- I created a filter in LibreOffice and selected the IDs for items with the action "delete", then I created a custom text facet in OpenRefine with this GREL:
```
or(
isNotNull(value.match('201')),
isNotNull(value.match('203')),
isNotNull(value.match('209')),
isNotNull(value.match('209')),
isNotNull(value.match('215')),
isNotNull(value.match('220')),
isNotNull(value.match('225')),
isNotNull(value.match('226')),
isNotNull(value.match('227')),
...
isNotNull(value.match('396'))
```
- Then I flagged all matching records and exported a CSV to use with SAFBuilder
- Then I imported the SAF bundle on DSpace Test:
```console
$ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" dspace import --add --eperson=fuuu@umm.com --source /tmp/SimpleArchiveFormat --mapfile=./2022-02-14-tac-batch2-201to400.map
```
- Export the next batch from OpenRefine (items with ID 401 to 700), check duplicates, and then join with the file names:
```console
$ csvcut -c id,dc.title,dcterms.issued,dcterms.type ~/Downloads/2022-01-21-CGSpace-TAC-ICW-batch3-401to700.csv > /tmp/tac3.csv
$ ./ilri/check-duplicates.py -i /tmp/tac3.csv -db dspacetest -u dspacetest -p 'dom@in34sniper' -o /tmp/2022-02-14-tac-batch3-401-700.csv
$ csvcut -c id,filename ~/Downloads/2022-01-21-CGSpace-TAC-ICW-batch3-401to700.csv > /tmp/tac3-filenames.csv
$ csvjoin -c id /tmp/2022-02-14-tac-batch3-401-700.csv /tmp/tac3-filenames.csv > /tmp/2022-02-14-tac-batch3-401-700-filenames.csv
```
- I sent these 300 items to Gaia...
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->

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@ -21,7 +21,7 @@ We agreed to try to do more alignment of affiliations/funders with ROR
<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-02/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-02/" />
<meta property="article:published_time" content="2022-02-01T14:06:54+02:00" /> <meta property="article:published_time" content="2022-02-01T14:06:54+02:00" />
<meta property="article:modified_time" content="2022-02-11T09:41:05+03:00" /> <meta property="article:modified_time" content="2022-02-14T09:40:59+03:00" />
@ -48,9 +48,9 @@ We agreed to try to do more alignment of affiliations/funders with ROR
"@type": "BlogPosting", "@type": "BlogPosting",
"headline": "February, 2022", "headline": "February, 2022",
"url": "https://alanorth.github.io/cgspace-notes/2022-02/", "url": "https://alanorth.github.io/cgspace-notes/2022-02/",
"wordCount": "2039", "wordCount": "2194",
"datePublished": "2022-02-01T14:06:54+02:00", "datePublished": "2022-02-01T14:06:54+02:00",
"dateModified": "2022-02-11T09:41:05+03:00", "dateModified": "2022-02-14T09:40:59+03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -494,6 +494,44 @@ sys 3m2.459s
</code></pre></div><ul> </code></pre></div><ul>
<li>Start a full harvest on AReS</li> <li>Start a full harvest on AReS</li>
</ul> </ul>
<h2 id="2022-02-14">2022-02-14</h2>
<ul>
<li>Last week Gaia sent me her notes on the second batch of TAC/ICW documents (items 201400 in the spreadsheet)
<ul>
<li>I created a filter in LibreOffice and selected the IDs for items with the action &ldquo;delete&rdquo;, then I created a custom text facet in OpenRefine with this GREL:</li>
</ul>
</li>
</ul>
<pre tabindex="0"><code>or(
isNotNull(value.match('201')),
isNotNull(value.match('203')),
isNotNull(value.match('209')),
isNotNull(value.match('209')),
isNotNull(value.match('215')),
isNotNull(value.match('220')),
isNotNull(value.match('225')),
isNotNull(value.match('226')),
isNotNull(value.match('227')),
...
isNotNull(value.match('396'))
</code></pre><ul>
<li>Then I flagged all matching records and exported a CSV to use with SAFBuilder
<ul>
<li>Then I imported the SAF bundle on DSpace Test:</li>
</ul>
</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ JAVA_OPTS<span style="color:#f92672">=</span><span style="color:#e6db74">&#34;-Xmx1024m -Dfile.encoding=UTF-8&#34;</span> dspace import --add --eperson<span style="color:#f92672">=</span>fuuu@umm.com --source /tmp/SimpleArchiveFormat --mapfile<span style="color:#f92672">=</span>./2022-02-14-tac-batch2-201to400.map
</code></pre></div><ul>
<li>Export the next batch from OpenRefine (items with ID 401 to 700), check duplicates, and then join with the file names:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ csvcut -c id,dc.title,dcterms.issued,dcterms.type ~/Downloads/2022-01-21-CGSpace-TAC-ICW-batch3-401to700.csv &gt; /tmp/tac3.csv
$ ./ilri/check-duplicates.py -i /tmp/tac3.csv -db dspacetest -u dspacetest -p <span style="color:#e6db74">&#39;dom@in34sniper&#39;</span> -o /tmp/2022-02-14-tac-batch3-401-700.csv
$ csvcut -c id,filename ~/Downloads/2022-01-21-CGSpace-TAC-ICW-batch3-401to700.csv &gt; /tmp/tac3-filenames.csv
$ csvjoin -c id /tmp/2022-02-14-tac-batch3-401-700.csv /tmp/tac3-filenames.csv &gt; /tmp/2022-02-14-tac-batch3-401-700-filenames.csv
</code></pre></div><ul>
<li>I sent these 300 items to Gaia&hellip;</li>
</ul>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-02-11T09:41:05+03:00" /> <meta property="og:updated_time" content="2022-02-14T09:40:59+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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</url><url> </url><url>
<loc>https://alanorth.github.io/cgspace-notes/2022-02/</loc> <loc>https://alanorth.github.io/cgspace-notes/2022-02/</loc>
<lastmod>2022-02-11T09:41:05+03:00</lastmod> <lastmod>2022-02-14T09:40:59+03:00</lastmod>
</url><url> </url><url>
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
<lastmod>2022-02-11T09:41:05+03:00</lastmod> <lastmod>2022-02-14T09:40:59+03:00</lastmod>
</url><url> </url><url>
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc> <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
<lastmod>2022-02-11T09:41:05+03:00</lastmod> <lastmod>2022-02-14T09:40:59+03:00</lastmod>
</url><url> </url><url>
<loc>https://alanorth.github.io/cgspace-notes/2022-01/</loc> <loc>https://alanorth.github.io/cgspace-notes/2022-01/</loc>
<lastmod>2022-02-07T09:49:34+03:00</lastmod> <lastmod>2022-02-07T09:49:34+03:00</lastmod>