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Alan Orth
2019-05-01 11:53:26 +03:00
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60
docs/posts/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-04-01T09:00:43&#43;03:00"/>
<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-04-01T09:00:43\x2b03:00",
"dateModified": "2019-05-01T07:37:43\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,38 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54&#43;03:00">Sun Jul 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-07-01">2018-07-01</h2>
<ul>
<li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
</ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre>
<ul>
<li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
@ -419,24 +451,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35&#43;03:00">Mon Sep 18, 2017</time> by Alan Orth in
<i class="fa fa-folder" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
</p>
</header>
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -461,16 +475,16 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
<li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>
<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
<li><a href="/cgspace-notes/2019-01/">January, 2019</a></li>
</ol>
</section>

64
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@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-04-01T09:00:43&#43;03:00"/>
<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-04-01T09:00:43\x2b03:00",
"dateModified": "2019-05-01T07:37:43\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,24 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35&#43;03:00">Mon Sep 18, 2017</time> by Alan Orth in
<i class="fa fa-folder" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/categories/notes" rel="category tag">Notes</a>
</p>
</header>
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
@ -357,42 +375,6 @@ DELETE 1
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00&#43;03:00">Fri Dec 02, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-12-02">2016-12-02</h2>
<ul>
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
</ul>
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&quot;dc.title&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&quot;THUMBNAIL&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&quot;-1&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
</code></pre>
<ul>
<li>I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade</li>
<li>I&rsquo;ve raised a ticket with Atmire to ask</li>
<li>Another worrying error from dspace.log is:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -417,16 +399,16 @@ DELETE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
<li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>
<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
<li><a href="/cgspace-notes/2019-01/">January, 2019</a></li>
</ol>
</section>

77
docs/posts/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-04-01T09:00:43&#43;03:00"/>
<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-04-01T09:00:43\x2b03:00",
"dateModified": "2019-05-01T07:37:43\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,42 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00&#43;03:00">Fri Dec 02, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-12-02">2016-12-02</h2>
<ul>
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
</ul>
<pre><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&quot;dc.title&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&quot;THUMBNAIL&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&quot;-1&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
</code></pre>
<ul>
<li>I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade</li>
<li>I&rsquo;ve raised a ticket with Atmire to ask</li>
<li>Another worrying error from dspace.log is:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
@ -344,37 +380,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00&#43;03:00">Fri Feb 05, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-02-05">2016-02-05</h2>
<ul>
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
</ul>
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
<ul>
<li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li>
<li>Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
@ -399,16 +404,16 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
<li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>
<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
<li><a href="/cgspace-notes/2019-01/">January, 2019</a></li>
</ol>
</section>

41
docs/posts/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-04-01T09:00:43&#43;03:00"/>
<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-04-01T09:00:43\x2b03:00",
"dateModified": "2019-05-01T07:37:43\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,37 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00&#43;03:00">Fri Feb 05, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-02-05">2016-02-05</h2>
<ul>
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
</ul>
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
<ul>
<li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li>
<li>Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
@ -193,16 +224,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
<li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>
<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
<li><a href="/cgspace-notes/2019-01/">January, 2019</a></li>
</ol>
</section>