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Add notes for 2020-01-27
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@ -13,8 +13,8 @@ Run system updates and reboot DSpace Test
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2017-07-04
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Merge changes for WLE Phase II theme rename (#329)
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Looking at extracting the metadata registries from ICARDA's MEL DSpace database so we can compare fields with CGSpace
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We can use PostgreSQL's extended output format (-x) plus sed to format the output into quasi XML:
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Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace
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We can use PostgreSQL’s extended output format (-x) plus sed to format the output into quasi XML:
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" />
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2017-07/" />
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@ -30,10 +30,10 @@ Run system updates and reboot DSpace Test
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2017-07-04
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Merge changes for WLE Phase II theme rename (#329)
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Looking at extracting the metadata registries from ICARDA's MEL DSpace database so we can compare fields with CGSpace
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We can use PostgreSQL's extended output format (-x) plus sed to format the output into quasi XML:
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Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace
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We can use PostgreSQL’s extended output format (-x) plus sed to format the output into quasi XML:
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"/>
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<meta name="generator" content="Hugo 0.62.2" />
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<meta name="generator" content="Hugo 0.63.1" />
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@ -63,7 +63,7 @@ We can use PostgreSQL's extended output format (-x) plus sed to format the o
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<!-- combined, minified CSS -->
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<link href="https://alanorth.github.io/cgspace-notes/css/style.a20c1a4367639632cdb341d23c27ca44fedcc75b0f8b3cbea6203010da153d3c.css" rel="stylesheet" integrity="sha256-ogwaQ2djljLNs0HSPCfKRP7cx1sPizy+piAwENoVPTw=" crossorigin="anonymous">
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<link href="https://alanorth.github.io/cgspace-notes/css/style.23e2c3298bcc8c1136c19aba330c211ec94c36f7c4454ea15cf4d3548370042a.css" rel="stylesheet" integrity="sha256-I+LDKYvMjBE2wZq6MwwhHslMNvfERU6hXPTTVINwBCo=" crossorigin="anonymous">
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<!-- RSS 2.0 feed -->
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@ -111,7 +111,7 @@ We can use PostgreSQL's extended output format (-x) plus sed to format the o
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-07/">July, 2017</a></h2>
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<p class="blog-post-meta"><time datetime="2017-07-01T18:03:52+03:00">Sat Jul 01, 2017</time> by Alan Orth in
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<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
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<span class="fas fa-tag" aria-hidden="true"></span> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
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</p>
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</header>
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@ -122,19 +122,19 @@ We can use PostgreSQL's extended output format (-x) plus sed to format the o
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<h2 id="2017-07-04">2017-07-04</h2>
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<ul>
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<li>Merge changes for WLE Phase II theme rename (<a href="https://github.com/ilri/DSpace/pull/329">#329</a>)</li>
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<li>Looking at extracting the metadata registries from ICARDA's MEL DSpace database so we can compare fields with CGSpace</li>
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<li>We can use PostgreSQL's extended output format (<code>-x</code>) plus <code>sed</code> to format the output into quasi XML:</li>
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<li>Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace</li>
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<li>We can use PostgreSQL’s extended output format (<code>-x</code>) plus <code>sed</code> to format the output into quasi XML:</li>
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</ul>
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<pre><code>$ psql dspacenew -x -c 'select element, qualifier, scope_note from metadatafieldregistry where metadata_schema_id=5 order by element, qualifier;' | sed -r 's:^-\[ RECORD (.*) \]-+$:</dc-type>\n<dc-type>\n<schema>cg</schema>:;s:([^ ]*) +\| (.*): <\1>\2</\1>:;s:^$:</dc-type>:;1s:</dc-type>\n::'
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</code></pre><ul>
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<li>The <code>sed</code> script is from a post on the <a href="https://www.postgresql.org/message-id/437E44A5.508%40ultimeth.com">PostgreSQL mailing list</a></li>
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<li>Abenet says the ILRI board wants to be able to have “lead author” for every item, so I've whipped up a WIP test in the <code>5_x-lead-author</code> branch</li>
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<li>It works but is still very rough and we haven't thought out the whole lifecycle yet</li>
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<li>Abenet says the ILRI board wants to be able to have “lead author” for every item, so I’ve whipped up a WIP test in the <code>5_x-lead-author</code> branch</li>
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<li>It works but is still very rough and we haven’t thought out the whole lifecycle yet</li>
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</ul>
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<p><img src="/cgspace-notes/2017/07/lead-author-test.png" alt="Testing lead author in submission form"></p>
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<ul>
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<li>I assume that “lead author” would actually be the first question on the item submission form</li>
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<li>We also need to check to see which ORCID authority core this uses, because it seems to be using an entirely new one rather than the one for <code>dc.contributor.author</code> (which makes sense of course, but fuck, all the author problems aren't bad enough?!)</li>
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<li>We also need to check to see which ORCID authority core this uses, because it seems to be using an entirely new one rather than the one for <code>dc.contributor.author</code> (which makes sense of course, but fuck, all the author problems aren’t bad enough?!)</li>
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<li>Also would need to edit XMLUI item displays to incorporate this into authors list</li>
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<li>And fuck, then anyone consuming our data via REST / OAI will not notice that we have an author outside of <code>dc.contributor.authors</code>… ugh</li>
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<li>What if we modify the item submission form to use <a href="https://wiki.duraspace.org/display/DSDOC5x/Submission+User+Interface#SubmissionUserInterface-ItemtypeBasedMetadataCollection"><code>type-bind</code> fields to show/hide certain fields depending on the type</a>?</li>
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@ -152,8 +152,8 @@ We can use PostgreSQL's extended output format (-x) plus sed to format the o
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org.postgresql.util.PSQLException: FATAL: remaining connection slots are reserved for non-replication superuser connections
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</code></pre><ul>
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<li>Looking at the <code>pg_stat_activity</code> table I saw there were indeed 98 active connections to PostgreSQL, and at this time the limit is 100, so that makes sense</li>
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<li>Tsega restarted Tomcat and it's working now</li>
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<li>Abenet said she was generating a report with Atmire's CUA module, so it could be due to that?</li>
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<li>Tsega restarted Tomcat and it’s working now</li>
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<li>Abenet said she was generating a report with Atmire’s CUA module, so it could be due to that?</li>
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<li>Looking in the logs I see this random error again that I should report to DSpace:</li>
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</ul>
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<pre><code>2017-07-05 13:50:07,196 ERROR org.dspace.statistics.SolrLogger @ COUNTRY ERROR: EU
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@ -171,7 +171,7 @@ org.postgresql.util.PSQLException: FATAL: remaining connection slots are reserve
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</ul>
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<h2 id="2017-07-14">2017-07-14</h2>
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<ul>
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<li>Sisay sent me a patch to add “Photo Report” to <code>dc.type</code> so I've added it to the <code>5_x-prod</code> branch</li>
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<li>Sisay sent me a patch to add “Photo Report” to <code>dc.type</code> so I’ve added it to the <code>5_x-prod</code> branch</li>
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</ul>
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<h2 id="2017-07-17">2017-07-17</h2>
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<ul>
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@ -193,7 +193,7 @@ org.postgresql.util.PSQLException: FATAL: remaining connection slots are reserve
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</li>
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<li>Talk to Tsega and Danny about exporting/injesting the blog posts from Drupal into DSpace?</li>
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<li>Followup meeting on August 8/9?</li>
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<li>Sent Abenet the 2415 records from CGIAR Library's Historical Archive (10947/1) after cleaning up the author authorities and HTML entities in <code>dc.contributor.author</code> and <code>dc.description.abstract</code> using OpenRefine:
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<li>Sent Abenet the 2415 records from CGIAR Library’s Historical Archive (10947/1) after cleaning up the author authorities and HTML entities in <code>dc.contributor.author</code> and <code>dc.description.abstract</code> using OpenRefine:
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<ul>
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<li>Authors: <code>value.replace(/::\w{8}-\w{4}-\w{4}-\w{4}-\w{12}::600/,"")</code></li>
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<li>Abstracts: <code>replace(value,/<\/?\w+((\s+\w+(\s*=\s*(?:".*?"|'.*?'|[^'">\s]+))?)+\s*|\s*)\/?>/,'')</code></li>
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@ -210,10 +210,10 @@ org.postgresql.util.PSQLException: FATAL: remaining connection slots are reserve
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</ul>
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<h2 id="2017-07-27">2017-07-27</h2>
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<ul>
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<li>Help Sisay with some transforms to add descriptions to the <code>filename</code> column of some CIAT Presentations he's working on in OpenRefine</li>
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<li>Help Sisay with some transforms to add descriptions to the <code>filename</code> column of some CIAT Presentations he’s working on in OpenRefine</li>
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<li>Marianne emailed a few days ago to ask why “Integrating Ecosystem Solutions” was not in the list of WLE Phase I Research Themes on the input form</li>
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<li>I told her that I only added the themes that I saw in the <a href="https://cgspace.cgiar.org/handle/10568/34508">WLE Phase I Research Themes</a> community</li>
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<li>Then Mia from WLE also emailed to ask where some WLE focal regions went, and I said I didn't understand what she was talking about, as all we did in our previous work was rename the old “Research Themes” subcommunity to “WLE Phase I Research Themes” and add a new subcommunity for “WLE Phase II Research Themes”.</li>
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<li>Then Mia from WLE also emailed to ask where some WLE focal regions went, and I said I didn’t understand what she was talking about, as all we did in our previous work was rename the old “Research Themes” subcommunity to “WLE Phase I Research Themes” and add a new subcommunity for “WLE Phase II Research Themes”.</li>
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<li>Discuss some modifications to the CCAFS project tags in CGSpace submission form and in the database</li>
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</ul>
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<h2 id="2017-07-28">2017-07-28</h2>
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@ -228,7 +228,7 @@ org.postgresql.util.PSQLException: FATAL: remaining connection slots are reserve
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<h2 id="2017-07-30">2017-07-30</h2>
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<ul>
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<li>Start working on CCAFS project tag cleanup</li>
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<li>More questions about inconsistencies and spelling mistakes in their tags, so I've sent some questions for followup</li>
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<li>More questions about inconsistencies and spelling mistakes in their tags, so I’ve sent some questions for followup</li>
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</ul>
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<h2 id="2017-07-31">2017-07-31</h2>
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<ul>
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