Add notes for 2023-07-08

2024-11-19 21:25:01 +01:00 · 2023-07-08 23:20:53 +03:00 · 2023-07-08 23:20:53 +03:00 · 8c1e898683
commit 8c1e898683
parent 89d3fb717c
35 changed files with 167 additions and 45 deletions
--- a/content/posts/2023-07.md
+++ b/content/posts/2023-07.md
@ -35,4 +35,59 @@ categories: ["Notes"]
  - It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI
 - I added a custom component to show share icons
 ## 2023-07-05
 - I spent some time trying to update OpenRXV from Angular 9 to 10 to 11 to 12 to 13
  - Most things work but there are some minor bugs it seems
 - Mishell from CIP emailed me to say she was having problems approving an item on CGSpace
  - Looking at PostgreSQL I saw there were a dozen or so locks that were several hours and even over one day old so I killed those processes and told her to try again
 ## 2023-07-06
 - Types meeting
 - I wrote a Python script to check Unpaywall for some information about DOIs
 ## 2023-07-7
 - Continue exploring Unpaywall data for some of our DOIs
  - In the past I've found their _licensing_ information to not be very reliable (preferring Crossref), but I think their _open access status_ is more reliable, especially when the provider is listed as being the publisher
  - Even so, sometimes the version can be "acceptedVersion", which is presumably the author's version, as opposed to the "publishedVersion", which means it's available as open access on the publisher's website
  - I did some quality assurance and found ~100 that were marked as Limited Access, but should have been Open Access, and fixed a handful of licenses
 - Delete duplicate metadata as describe in my DSpace issue from last year: https://github.com/DSpace/DSpace/issues/8253
 - Start working on some statistics on AGROVOC usage for my presenation next week
  - I used the following SQL query to dump values from all subject fields and lower case them:
 ```console
 localhost/dspacetest= ☘ \COPY (SELECT DISTINCT(lower(text_value)) AS "subject" FROM metadatavalue WHERE dspace_object_id in (SELECT dspace_object_id FROM item) AND metadata_field_id IN (187, 120, 210, 122, 215, 127, 208, 124, 128, 123, 125, 135, 203, 236, 238, 119)) to /tmp/2023-07-07-cgspace-subjects.csv WITH CSV HEADER;
 COPY 26443
 Time: 2564.851 ms (00:02.565)
 ```
 - Then I extracted the subjects and looked them up against AGROVOC:
 ```console
 $ csvcut -c subject /tmp/2023-07-07-cgspace-subjects.csv | sed '1d' > /tmp/2023-07-07-cgspace-subjects.txt
 $ ./ilri/agrovoc_lookup.py -i /tmp/2023-07-07-cgspace-subjects.txt -o /tmp/2023-07-07-cgspace-subjects-results.csv
 ```
 - I did some more tests with Angular 13 on OpenRXV and found out why the repository type dropdown wasn't working
  - It was because of a missing 1-line JSON file in the data directory, which is runtime data, not code
  - I copied the data directory from the production serve and rebuild and the site is working well now
  - I did a full harvest with plugins and it worked!
  - So it seems Angular 13.4.0 will work, yay
 ## 2023-07-08
 - Export CGSpace to check for missing Initiative collection mappings
  - Start a harvest on AReS
 - The AGROVOC lookup finished, so I checked the number of matches:
 ```console
 $ csvgrep -c 'match type' -r '^.+$' ~/Downloads/2023-07-07-cgspace-subjects-resolved.csv | sed 1d | wc -l
 12528
 ```
 - So that's 12,528 out of 26,443 unique terms (47.3%)
 - I did a LOT of work on the OpenRXV frontend build dependencies to bring more in line with Angular 13
 <!-- vim: set sw=2 ts=2: -->
--- a/docs/2023-07/index.html
+++ b/docs/2023-07/index.html
@ -7,17 +7,17 @@
 <meta property="og:title" content="July, 2023" />
-<meta property="og:description" content="2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &ldquo;Copyrighted; all rights reserved&rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&rsquo;s usually copyrighted (could still be open access, but we can&rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&rsquo;t like the Impact Area icons as a component because they don&rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons " />
+<meta property="og:description" content="2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &ldquo;Copyrighted; all rights reserved&rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&rsquo;s usually copyrighted (could still be open access, but we can&rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&rsquo;t like the Impact Area icons as a component because they don&rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 2023-07-05 I spent some time trying to update OpenRXV from Angular 9 to 10 to 11 to 12 to 13 Most things work but there are some minor bugs it seems Mishell from CIP emailed me to say she was having problems approving an item on CGSpace Looking at PostgreSQL I saw there were a dozen or so locks that were several hours and even over one day old so I killed those processes and told her to try again 2023-07-06 Types meeting I wrote a Python script to check Unpaywall for some information about DOIs 2023-07-7 Continue exploring Unpaywall data for some of our DOIs In the past I&rsquo;ve found their licensing information to not be very reliable (preferring Crossref), but I think their open access status is more reliable, especially when the provider is listed as being the publisher Even so, sometimes the version can be &ldquo;acceptedVersion&rdquo;, which is presumably the author&rsquo;s version, as opposed to the &ldquo;publishedVersion&rdquo;, which means it&rsquo;s available as open access on the publisher&rsquo;s website I did some quality assurance and found ~100 that were marked as Limited Access, but should have been Open Access, and fixed a handful of licenses Delete duplicate metadata as describe in my DSpace issue from last year: https://github." />
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-07/" />
 <meta property="article:published_time" content="2023-07-01T17:14:36+03:00" />
-<meta property="article:modified_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="article:modified_time" content="2023-07-05T16:36:30+03:00" />
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="July, 2023"/>
-<meta name="twitter:description" content="2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &ldquo;Copyrighted; all rights reserved&rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&rsquo;s usually copyrighted (could still be open access, but we can&rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&rsquo;t like the Impact Area icons as a component because they don&rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons "/>
+<meta name="twitter:description" content="2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &ldquo;Copyrighted; all rights reserved&rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&rsquo;s usually copyrighted (could still be open access, but we can&rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&rsquo;t like the Impact Area icons as a component because they don&rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 2023-07-05 I spent some time trying to update OpenRXV from Angular 9 to 10 to 11 to 12 to 13 Most things work but there are some minor bugs it seems Mishell from CIP emailed me to say she was having problems approving an item on CGSpace Looking at PostgreSQL I saw there were a dozen or so locks that were several hours and even over one day old so I killed those processes and told her to try again 2023-07-06 Types meeting I wrote a Python script to check Unpaywall for some information about DOIs 2023-07-7 Continue exploring Unpaywall data for some of our DOIs In the past I&rsquo;ve found their licensing information to not be very reliable (preferring Crossref), but I think their open access status is more reliable, especially when the provider is listed as being the publisher Even so, sometimes the version can be &ldquo;acceptedVersion&rdquo;, which is presumably the author&rsquo;s version, as opposed to the &ldquo;publishedVersion&rdquo;, which means it&rsquo;s available as open access on the publisher&rsquo;s website I did some quality assurance and found ~100 that were marked as Limited Access, but should have been Open Access, and fixed a handful of licenses Delete duplicate metadata as describe in my DSpace issue from last year: https://github."/>
 <meta name="generator" content="Hugo 0.112.3">
@ -28,9 +28,9 @@
  "@type": "BlogPosting",
  "headline": "July, 2023",
  "url": "https://alanorth.github.io/cgspace-notes/2023-07/",
-  "wordCount": "273",
+  "wordCount": "731",
  "datePublished": "2023-07-01T17:14:36+03:00",
-  "dateModified": "2023-07-04T08:03:36+03:00",
+  "dateModified": "2023-07-05T16:36:30+03:00",
  "author": {
    "@type": "Person",
    "name": "Alan Orth"
@ -143,6 +143,73 @@
 </li>
 <li>I added a custom component to show share icons</li>
 </ul>
 <h2 id="2023-07-05">2023-07-05</h2>
 <ul>
 <li>I spent some time trying to update OpenRXV from Angular 9 to 10 to 11 to 12 to 13
 <ul>
 <li>Most things work but there are some minor bugs it seems</li>
 </ul>
 </li>
 <li>Mishell from CIP emailed me to say she was having problems approving an item on CGSpace
 <ul>
 <li>Looking at PostgreSQL I saw there were a dozen or so locks that were several hours and even over one day old so I killed those processes and told her to try again</li>
 </ul>
 </li>
 </ul>
 <h2 id="2023-07-06">2023-07-06</h2>
 <ul>
 <li>Types meeting</li>
 <li>I wrote a Python script to check Unpaywall for some information about DOIs</li>
 </ul>
 <h2 id="2023-07-7">2023-07-7</h2>
 <ul>
 <li>Continue exploring Unpaywall data for some of our DOIs
 <ul>
 <li>In the past I&rsquo;ve found their <em>licensing</em> information to not be very reliable (preferring Crossref), but I think their <em>open access status</em> is more reliable, especially when the provider is listed as being the publisher</li>
 <li>Even so, sometimes the version can be &ldquo;acceptedVersion&rdquo;, which is presumably the author&rsquo;s version, as opposed to the &ldquo;publishedVersion&rdquo;, which means it&rsquo;s available as open access on the publisher&rsquo;s website</li>
 <li>I did some quality assurance and found ~100 that were marked as Limited Access, but should have been Open Access, and fixed a handful of licenses</li>
 </ul>
 </li>
 <li>Delete duplicate metadata as describe in my DSpace issue from last year: <a href="https://github.com/DSpace/DSpace/issues/8253">https://github.com/DSpace/DSpace/issues/8253</a></li>
 <li>Start working on some statistics on AGROVOC usage for my presenation next week
 <ul>
 <li>I used the following SQL query to dump values from all subject fields and lower case them:</li>
 </ul>
 </li>
 </ul>
 <div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspacetest= ☘ \COPY (SELECT DISTINCT(lower(text_value)) AS &#34;subject&#34; FROM metadatavalue WHERE dspace_object_id in (SELECT dspace_object_id FROM item) AND metadata_field_id IN (187, 120, 210, 122, 215, 127, 208, 124, 128, 123, 125, 135, 203, 236, 238, 119)) to /tmp/2023-07-07-cgspace-subjects.csv WITH CSV HEADER;
 </span></span><span style="display:flex;"><span>COPY 26443
 </span></span><span style="display:flex;"><span>Time: 2564.851 ms (00:02.565)
 </span></span></code></pre></div><ul>
 <li>Then I extracted the subjects and looked them up against AGROVOC:</li>
 </ul>
 <div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ csvcut -c subject /tmp/2023-07-07-cgspace-subjects.csv | sed <span style="color:#e6db74">&#39;1d&#39;</span> &gt; /tmp/2023-07-07-cgspace-subjects.txt
 </span></span><span style="display:flex;"><span>$ ./ilri/agrovoc_lookup.py -i /tmp/2023-07-07-cgspace-subjects.txt -o /tmp/2023-07-07-cgspace-subjects-results.csv
 </span></span></code></pre></div><ul>
 <li>I did some more tests with Angular 13 on OpenRXV and found out why the repository type dropdown wasn&rsquo;t working
 <ul>
 <li>It was because of a missing 1-line JSON file in the data directory, which is runtime data, not code</li>
 <li>I copied the data directory from the production serve and rebuild and the site is working well now</li>
 <li>I did a full harvest with plugins and it worked!</li>
 <li>So it seems Angular 13.4.0 will work, yay</li>
 </ul>
 </li>
 </ul>
 <h2 id="2023-07-08">2023-07-08</h2>
 <ul>
 <li>Export CGSpace to check for missing Initiative collection mappings
 <ul>
 <li>Start a harvest on AReS</li>
 </ul>
 </li>
 <li>The AGROVOC lookup finished, so I checked the number of matches:</li>
 </ul>
 <div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ csvgrep -c <span style="color:#e6db74">&#39;match type&#39;</span> -r <span style="color:#e6db74">&#39;^.+$&#39;</span> ~/Downloads/2023-07-07-cgspace-subjects-resolved.csv | sed 1d | wc -l
 </span></span><span style="display:flex;"><span>12528
 </span></span></code></pre></div><ul>
 <li>So that&rsquo;s 12,528 out of 26,443 unique terms (47.3%)</li>
 <li>I did a LOT of work on the OpenRXV frontend build dependencies to bring more in line with Angular 13</li>
 </ul>
 <!-- raw HTML omitted -->
--- a/docs/categories/index.html
+++ b/docs/categories/index.html
@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/categories/notes/index.html
+++ b/docs/categories/notes/index.html
@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
@ -90,7 +90,7 @@
 </p>
  </header>
-  2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &ldquo;Copyrighted; all rights reserved&rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&rsquo;s usually copyrighted (could still be open access, but we can&rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&rsquo;t like the Impact Area icons as a component because they don&rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 
+  2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &ldquo;Copyrighted; all rights reserved&rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&rsquo;s usually copyrighted (could still be open access, but we can&rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&rsquo;t like the Impact Area icons as a component because they don&rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 2023-07-05 I spent some time trying to update OpenRXV from Angular 9 to 10 to 11 to 12 to 13 Most things work but there are some minor bugs it seems Mishell from CIP emailed me to say she was having problems approving an item on CGSpace Looking at PostgreSQL I saw there were a dozen or so locks that were several hours and even over one day old so I killed those processes and told her to try again 2023-07-06 Types meeting I wrote a Python script to check Unpaywall for some information about DOIs 2023-07-7 Continue exploring Unpaywall data for some of our DOIs In the past I&rsquo;ve found their licensing information to not be very reliable (preferring Crossref), but I think their open access status is more reliable, especially when the provider is listed as being the publisher Even so, sometimes the version can be &ldquo;acceptedVersion&rdquo;, which is presumably the author&rsquo;s version, as opposed to the &ldquo;publishedVersion&rdquo;, which means it&rsquo;s available as open access on the publisher&rsquo;s website I did some quality assurance and found ~100 that were marked as Limited Access, but should have been Open Access, and fixed a handful of licenses Delete duplicate metadata as describe in my DSpace issue from last year: https://github.
  <a href='https://alanorth.github.io/cgspace-notes/2023-07/'>Read more →</a>
 </article> 
--- a/docs/categories/notes/index.xml
+++ b/docs/categories/notes/index.xml
@ -13,7 +13,7 @@
      <pubDate>Sat, 01 Jul 2023 17:14:36 +0300</pubDate>
      <guid>https://alanorth.github.io/cgspace-notes/2023-07/</guid>
-      <description>2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &amp;ldquo;Copyrighted; all rights reserved&amp;rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&amp;rsquo;s usually copyrighted (could still be open access, but we can&amp;rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&amp;hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&amp;rsquo;t like the Impact Area icons as a component because they don&amp;rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons </description>
+      <description>2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &amp;ldquo;Copyrighted; all rights reserved&amp;rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&amp;rsquo;s usually copyrighted (could still be open access, but we can&amp;rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&amp;hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&amp;rsquo;t like the Impact Area icons as a component because they don&amp;rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 2023-07-05 I spent some time trying to update OpenRXV from Angular 9 to 10 to 11 to 12 to 13 Most things work but there are some minor bugs it seems Mishell from CIP emailed me to say she was having problems approving an item on CGSpace Looking at PostgreSQL I saw there were a dozen or so locks that were several hours and even over one day old so I killed those processes and told her to try again 2023-07-06 Types meeting I wrote a Python script to check Unpaywall for some information about DOIs 2023-07-7 Continue exploring Unpaywall data for some of our DOIs In the past I&amp;rsquo;ve found their licensing information to not be very reliable (preferring Crossref), but I think their open access status is more reliable, especially when the provider is listed as being the publisher Even so, sometimes the version can be &amp;ldquo;acceptedVersion&amp;rdquo;, which is presumably the author&amp;rsquo;s version, as opposed to the &amp;ldquo;publishedVersion&amp;rdquo;, which means it&amp;rsquo;s available as open access on the publisher&amp;rsquo;s website I did some quality assurance and found ~100 that were marked as Limited Access, but should have been Open Access, and fixed a handful of licenses Delete duplicate metadata as describe in my DSpace issue from last year: https://github.</description>
    </item>
    <item>
--- a/docs/categories/notes/page/2/index.html
+++ b/docs/categories/notes/page/2/index.html
@ -10,7 +10,7 @@
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--- a/docs/categories/notes/page/3/index.html
+++ b/docs/categories/notes/page/3/index.html
@ -10,7 +10,7 @@
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--- a/docs/categories/notes/page/5/index.html
+++ b/docs/categories/notes/page/5/index.html
@ -10,7 +10,7 @@
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+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/categories/notes/page/6/index.html
+++ b/docs/categories/notes/page/6/index.html
@ -10,7 +10,7 @@
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-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/categories/notes/page/7/index.html
+++ b/docs/categories/notes/page/7/index.html
@ -10,7 +10,7 @@
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-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
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--- a/docs/categories/notes/page/8/index.html
+++ b/docs/categories/notes/page/8/index.html
@ -10,7 +10,7 @@
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 <meta property="og:type" content="website" />
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-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/index.html
+++ b/docs/index.html
@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
@ -105,7 +105,7 @@
 </p>
  </header>
-  2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &ldquo;Copyrighted; all rights reserved&rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&rsquo;s usually copyrighted (could still be open access, but we can&rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&rsquo;t like the Impact Area icons as a component because they don&rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 
+  2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &ldquo;Copyrighted; all rights reserved&rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&rsquo;s usually copyrighted (could still be open access, but we can&rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&rsquo;t like the Impact Area icons as a component because they don&rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 2023-07-05 I spent some time trying to update OpenRXV from Angular 9 to 10 to 11 to 12 to 13 Most things work but there are some minor bugs it seems Mishell from CIP emailed me to say she was having problems approving an item on CGSpace Looking at PostgreSQL I saw there were a dozen or so locks that were several hours and even over one day old so I killed those processes and told her to try again 2023-07-06 Types meeting I wrote a Python script to check Unpaywall for some information about DOIs 2023-07-7 Continue exploring Unpaywall data for some of our DOIs In the past I&rsquo;ve found their licensing information to not be very reliable (preferring Crossref), but I think their open access status is more reliable, especially when the provider is listed as being the publisher Even so, sometimes the version can be &ldquo;acceptedVersion&rdquo;, which is presumably the author&rsquo;s version, as opposed to the &ldquo;publishedVersion&rdquo;, which means it&rsquo;s available as open access on the publisher&rsquo;s website I did some quality assurance and found ~100 that were marked as Limited Access, but should have been Open Access, and fixed a handful of licenses Delete duplicate metadata as describe in my DSpace issue from last year: https://github.
  <a href='https://alanorth.github.io/cgspace-notes/2023-07/'>Read more →</a>
 </article> 
--- a/docs/index.xml
+++ b/docs/index.xml
@ -13,7 +13,7 @@
      <pubDate>Sat, 01 Jul 2023 17:14:36 +0300</pubDate>
      <guid>https://alanorth.github.io/cgspace-notes/2023-07/</guid>
-      <description>2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &amp;ldquo;Copyrighted; all rights reserved&amp;rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&amp;rsquo;s usually copyrighted (could still be open access, but we can&amp;rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&amp;hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&amp;rsquo;t like the Impact Area icons as a component because they don&amp;rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons </description>
+      <description>2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &amp;ldquo;Copyrighted; all rights reserved&amp;rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&amp;rsquo;s usually copyrighted (could still be open access, but we can&amp;rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&amp;hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&amp;rsquo;t like the Impact Area icons as a component because they don&amp;rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 2023-07-05 I spent some time trying to update OpenRXV from Angular 9 to 10 to 11 to 12 to 13 Most things work but there are some minor bugs it seems Mishell from CIP emailed me to say she was having problems approving an item on CGSpace Looking at PostgreSQL I saw there were a dozen or so locks that were several hours and even over one day old so I killed those processes and told her to try again 2023-07-06 Types meeting I wrote a Python script to check Unpaywall for some information about DOIs 2023-07-7 Continue exploring Unpaywall data for some of our DOIs In the past I&amp;rsquo;ve found their licensing information to not be very reliable (preferring Crossref), but I think their open access status is more reliable, especially when the provider is listed as being the publisher Even so, sometimes the version can be &amp;ldquo;acceptedVersion&amp;rdquo;, which is presumably the author&amp;rsquo;s version, as opposed to the &amp;ldquo;publishedVersion&amp;rdquo;, which means it&amp;rsquo;s available as open access on the publisher&amp;rsquo;s website I did some quality assurance and found ~100 that were marked as Limited Access, but should have been Open Access, and fixed a handful of licenses Delete duplicate metadata as describe in my DSpace issue from last year: https://github.</description>
    </item>
    <item>
--- a/docs/page/10/index.html
+++ b/docs/page/10/index.html
@ -10,7 +10,7 @@
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+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/page/2/index.html
+++ b/docs/page/2/index.html
@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/page/3/index.html
+++ b/docs/page/3/index.html
@ -10,7 +10,7 @@
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-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/page/4/index.html
+++ b/docs/page/4/index.html
@ -10,7 +10,7 @@
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--- a/docs/page/5/index.html
+++ b/docs/page/5/index.html
@ -10,7 +10,7 @@
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-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/page/6/index.html
+++ b/docs/page/6/index.html
@ -10,7 +10,7 @@
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-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/page/7/index.html
+++ b/docs/page/7/index.html
@ -10,7 +10,7 @@
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-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/page/8/index.html
+++ b/docs/page/8/index.html
@ -10,7 +10,7 @@
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-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/page/9/index.html
+++ b/docs/page/9/index.html
@ -10,7 +10,7 @@
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 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
--- a/docs/posts/index.html
+++ b/docs/posts/index.html
@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
-<meta property="og:updated_time" content="2023-07-04T08:03:36+03:00" />
+<meta property="og:updated_time" content="2023-07-05T16:36:30+03:00" />
@ -105,7 +105,7 @@
 </p>
  </header>
-  2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &ldquo;Copyrighted; all rights reserved&rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&rsquo;s usually copyrighted (could still be open access, but we can&rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&rsquo;t like the Impact Area icons as a component because they don&rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 
+  2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &ldquo;Copyrighted; all rights reserved&rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&rsquo;s usually copyrighted (could still be open access, but we can&rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&rsquo;t like the Impact Area icons as a component because they don&rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 2023-07-05 I spent some time trying to update OpenRXV from Angular 9 to 10 to 11 to 12 to 13 Most things work but there are some minor bugs it seems Mishell from CIP emailed me to say she was having problems approving an item on CGSpace Looking at PostgreSQL I saw there were a dozen or so locks that were several hours and even over one day old so I killed those processes and told her to try again 2023-07-06 Types meeting I wrote a Python script to check Unpaywall for some information about DOIs 2023-07-7 Continue exploring Unpaywall data for some of our DOIs In the past I&rsquo;ve found their licensing information to not be very reliable (preferring Crossref), but I think their open access status is more reliable, especially when the provider is listed as being the publisher Even so, sometimes the version can be &ldquo;acceptedVersion&rdquo;, which is presumably the author&rsquo;s version, as opposed to the &ldquo;publishedVersion&rdquo;, which means it&rsquo;s available as open access on the publisher&rsquo;s website I did some quality assurance and found ~100 that were marked as Limited Access, but should have been Open Access, and fixed a handful of licenses Delete duplicate metadata as describe in my DSpace issue from last year: https://github.
  <a href='https://alanorth.github.io/cgspace-notes/2023-07/'>Read more →</a>
 </article> 
--- a/docs/posts/index.xml
+++ b/docs/posts/index.xml
@ -13,7 +13,7 @@
      <pubDate>Sat, 01 Jul 2023 17:14:36 +0300</pubDate>
      <guid>https://alanorth.github.io/cgspace-notes/2023-07/</guid>
-      <description>2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &amp;ldquo;Copyrighted; all rights reserved&amp;rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&amp;rsquo;s usually copyrighted (could still be open access, but we can&amp;rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&amp;hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&amp;rsquo;t like the Impact Area icons as a component because they don&amp;rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons </description>
+      <description>2023-07-01 Export CGSpace to check for missing Initiative collection mappings Start harvesting on AReS 2023-07-02 Minor edits to the crossref_doi_lookup.py script while running some checks from 22,000 CGSpace DOIs 2023-07-03 I analyzed the licenses declared by Crossref and found with high confidence that ~400 of ours were incorrect I took the more accurate ones from Crossref and updated the items on CGSpace I took a few hundred ISBNs as well for where we were missing them I also tagged ~4,700 items with missing licenses as &amp;ldquo;Copyrighted; all rights reserved&amp;rdquo; based on their Crossref license status being TDM, mostly from Elsevier, Wiley, and Springer Checking a dozen or so manually, I confirmed that if Crossref only has a TDM license then it&amp;rsquo;s usually copyrighted (could still be open access, but we can&amp;rsquo;t tell via Crossref) I would be curious to write a script to check the Unpaywall API for open access status&amp;hellip; In the past I found that their license status was not very accurate, but the open access status might be more reliable More minor work on the DSpace 7 item views I learned some new Angular template syntax I created a custom component to show Creative Commons licenses on the simple item page I also decided that I don&amp;rsquo;t like the Impact Area icons as a component because they don&amp;rsquo;t have any visual meaning 2023-07-04 Focus group meeting with CGSpace partners about DSpace 7 I added a themed file selection component to the CGSpace theme It displays the bistream description instead of the file name, just like we did in DSpace 6 XMLUI I added a custom component to show share icons 2023-07-05 I spent some time trying to update OpenRXV from Angular 9 to 10 to 11 to 12 to 13 Most things work but there are some minor bugs it seems Mishell from CIP emailed me to say she was having problems approving an item on CGSpace Looking at PostgreSQL I saw there were a dozen or so locks that were several hours and even over one day old so I killed those processes and told her to try again 2023-07-06 Types meeting I wrote a Python script to check Unpaywall for some information about DOIs 2023-07-7 Continue exploring Unpaywall data for some of our DOIs In the past I&amp;rsquo;ve found their licensing information to not be very reliable (preferring Crossref), but I think their open access status is more reliable, especially when the provider is listed as being the publisher Even so, sometimes the version can be &amp;ldquo;acceptedVersion&amp;rdquo;, which is presumably the author&amp;rsquo;s version, as opposed to the &amp;ldquo;publishedVersion&amp;rdquo;, which means it&amp;rsquo;s available as open access on the publisher&amp;rsquo;s website I did some quality assurance and found ~100 that were marked as Limited Access, but should have been Open Access, and fixed a handful of licenses Delete duplicate metadata as describe in my DSpace issue from last year: https://github.</description>
    </item>
    <item>
--- a/docs/posts/page/10/index.html
+++ b/docs/posts/page/10/index.html
@ -10,7 +10,7 @@
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