Update notes for 2019-04-08

content/posts/2019-04.md

@@ -401,4 +401,31 @@ $ psql -c 'select * from pg_stat_activity' | grep -o -E '(dspaceWeb|dspaceApi|ds
 - It seems that the issue with CGSpace being "down" is actually because of CPU steal again!!!
 - I opened a ticket with support and asked them to migrate the VM to a less busy host
 
+## 2019-04-08
+
+- Start checking IITA's last round of batch uploads from [March on DSpace Test](https://dspacetest.cgiar.org/handle/10568/100333) (20193rd.xls)
+  - Lots of problems with affiliations, I had to correct about sixty of them
+  - I used lein to host the latest CSV of our affiliations for OpenRefine to reconcile against:
+
+```
+$ lein run ~/src/git/DSpace/2019-02-22-affiliations.csv name id
+```
+
+- After matching the values and creating some new matches I had trouble remembering how to copy the reconciled values to a new column
+  - The matched values can be accessed with `cell.recon.match.name`, but some of the new values don't appear, perhaps because I edited the original cell values?
+  - I ended up using this GREL expression to copy all values to a new column:
+
+```
+if(cell.recon.matched, cell.recon.match.name, value)
+```
+
+- See the [OpenRefine variables documentation](https://github.com/OpenRefine/OpenRefine/wiki/Variables#recon) for more notes about the `recon` object
+- I also noticed a handful of errors in our current list of affiliations so I corrected them:
+
+```
+$ ./fix-metadata-values.py -i 2019-04-08-fix-13-affiliations.csv -db dspace -u dspace -p 'fuuu' -f cg.contributor.affiliation -m 211 -t correct -d
+```
+
+- We should create a new list of affiliations to update our controlled vocabulary again
+
 <!-- vim: set sw=2 ts=2: -->

docs/2019-04/index.html

@@ -38,7 +38,7 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-04/" />
 <meta property="article:published_time" content="2019-04-01T09:00:43&#43;03:00"/>
-<meta property="article:modified_time" content="2019-04-07T21:15:03&#43;03:00"/>
+<meta property="article:modified_time" content="2019-04-07T21:17:16&#43;03:00"/>
 
 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="April, 2019"/>
@@ -81,9 +81,9 @@ $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace
   "@type": "BlogPosting",
   "headline": "April, 2019",
   "url": "https://alanorth.github.io/cgspace-notes/2019-04/",
-  "wordCount": "2222",
+  "wordCount": "2397",
   "datePublished": "2019-04-01T09:00:43&#43;03:00",
-  "dateModified": "2019-04-07T21:15:03&#43;03:00",
+  "dateModified": "2019-04-07T21:17:16&#43;03:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -623,6 +623,44 @@ X-XSS-Protection: 1; mode=block
 <li>I opened a ticket with support and asked them to migrate the VM to a less busy host</li>
 </ul>
 
+<h2 id="2019-04-08">2019-04-08</h2>
+
+<ul>
+<li>Start checking IITA&rsquo;s last round of batch uploads from <a href="https://dspacetest.cgiar.org/handle/10568/100333">March on DSpace Test</a> (20193rd.xls)
+
+<ul>
+<li>Lots of problems with affiliations, I had to correct about sixty of them</li>
+<li>I used lein to host the latest CSV of our affiliations for OpenRefine to reconcile against:</li>
+</ul></li>
+</ul>
+
+<pre><code>$ lein run ~/src/git/DSpace/2019-02-22-affiliations.csv name id
+</code></pre>
+
+<ul>
+<li>After matching the values and creating some new matches I had trouble remembering how to copy the reconciled values to a new column
+
+<ul>
+<li>The matched values can be accessed with <code>cell.recon.match.name</code>, but some of the new values don&rsquo;t appear, perhaps because I edited the original cell values?</li>
+<li>I ended up using this GREL expression to copy all values to a new column:</li>
+</ul></li>
+</ul>
+
+<pre><code>if(cell.recon.matched, cell.recon.match.name, value)
+</code></pre>
+
+<ul>
+<li>See the <a href="https://github.com/OpenRefine/OpenRefine/wiki/Variables#recon">OpenRefine variables documentation</a> for more notes about the <code>recon</code> object</li>
+<li>I also noticed a handful of errors in our current list of affiliations so I corrected them:</li>
+</ul>
+
+<pre><code>$ ./fix-metadata-values.py -i 2019-04-08-fix-13-affiliations.csv -db dspace -u dspace -p 'fuuu' -f cg.contributor.affiliation -m 211 -t correct -d
+</code></pre>
+
+<ul>
+<li>We should create a new list of affiliations to update our controlled vocabulary again</li>
+</ul>
+
 <!-- vim: set sw=2 ts=2: -->
 
   

docs/sitemap.xml

@@ -4,7 +4,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/2019-04/</loc>
-    <lastmod>2019-04-07T21:15:03+03:00</lastmod>
+    <lastmod>2019-04-07T21:17:16+03:00</lastmod>
   </url>
   
   <url>
@@ -219,7 +219,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/</loc>
-    <lastmod>2019-04-07T21:15:03+03:00</lastmod>
+    <lastmod>2019-04-07T21:17:16+03:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -230,7 +230,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
-    <lastmod>2019-04-07T21:15:03+03:00</lastmod>
+    <lastmod>2019-04-07T21:17:16+03:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -242,13 +242,13 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
-    <lastmod>2019-04-07T21:15:03+03:00</lastmod>
+    <lastmod>2019-04-07T21:17:16+03:00</lastmod>
     <priority>0</priority>
   </url>
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
-    <lastmod>2019-04-07T21:15:03+03:00</lastmod>
+    <lastmod>2019-04-07T21:17:16+03:00</lastmod>
     <priority>0</priority>
   </url>