diff --git a/docs/2015-11/index.html b/docs/2015-11/index.html index 982a4257c..fae70e4a7 100644 --- a/docs/2015-11/index.html +++ b/docs/2015-11/index.html @@ -34,7 +34,7 @@ Last week I had increased the limit from 30 to 60, which seemed to help, but now $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace 78 "/> - + @@ -244,14 +244,14 @@ db.statementpool = true
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2015-12/index.html b/docs/2015-12/index.html index fc3c7ab3e..2aac0f955 100644 --- a/docs/2015-12/index.html +++ b/docs/2015-12/index.html @@ -36,7 +36,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less -rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo -rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz "/> - + @@ -266,14 +266,14 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-01/index.html b/docs/2016-01/index.html index ed6ac2ecb..27c905299 100644 --- a/docs/2016-01/index.html +++ b/docs/2016-01/index.html @@ -28,7 +28,7 @@ Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_ I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated. Update GitHub wiki for documentation of maintenance tasks. "/> - + @@ -202,14 +202,14 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-02/index.html b/docs/2016-02/index.html index afffd7079..c8a7d6d8a 100644 --- a/docs/2016-02/index.html +++ b/docs/2016-02/index.html @@ -38,7 +38,7 @@ I noticed we have a very interesting list of countries on CGSpace: Not only are there 49,000 countries, we have some blanks (25)… Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE” "/> - + @@ -380,14 +380,14 @@ Bitstream: tést señora alimentación.pdf
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-03/index.html b/docs/2016-03/index.html index 6c7af09b1..a13a22504 100644 --- a/docs/2016-03/index.html +++ b/docs/2016-03/index.html @@ -28,7 +28,7 @@ Looking at issues with author authorities on CGSpace For some reason we still have the index-lucene-update cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server "/> - + @@ -318,14 +318,14 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-04/index.html b/docs/2016-04/index.html index ab0e7b849..bd873d763 100644 --- a/docs/2016-04/index.html +++ b/docs/2016-04/index.html @@ -32,7 +32,7 @@ After running DSpace for over five years I’ve never needed to look in any This will save us a few gigs of backup space we’re paying for on S3 Also, I noticed the checker log has some errors we should pay attention to: "/> - + @@ -497,14 +497,14 @@ dspace.log.2016-04-27:7271
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-05/index.html b/docs/2016-05/index.html index 7d5d4343d..6cee9880c 100644 --- a/docs/2016-05/index.html +++ b/docs/2016-05/index.html @@ -34,7 +34,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period! # awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l 3168 "/> - + @@ -373,14 +373,14 @@ sys 0m20.540s
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-06/index.html b/docs/2016-06/index.html index d0bee0989..e63eb20eb 100644 --- a/docs/2016-06/index.html +++ b/docs/2016-06/index.html @@ -34,7 +34,7 @@ This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRec You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship "/> - + @@ -411,14 +411,14 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-07/index.html b/docs/2016-07/index.html index d92275c35..33eb1208d 100644 --- a/docs/2016-07/index.html +++ b/docs/2016-07/index.html @@ -44,7 +44,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and In this case the select query was showing 95 results before the update "/> - + @@ -327,14 +327,14 @@ discovery.index.authority.ignore-variants=true
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-08/index.html b/docs/2016-08/index.html index a3cb33c81..d0a9ae163 100644 --- a/docs/2016-08/index.html +++ b/docs/2016-08/index.html @@ -42,7 +42,7 @@ $ git checkout -b 55new 5_x-prod $ git reset --hard ilri/5_x-prod $ git rebase -i dspace-5.5 "/> - + @@ -391,14 +391,14 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-09/index.html b/docs/2016-09/index.html index e75015c99..900afbac1 100644 --- a/docs/2016-09/index.html +++ b/docs/2016-09/index.html @@ -34,7 +34,7 @@ It looks like we might be able to use OUs now, instead of DCs: $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)" "/> - + @@ -608,14 +608,14 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-10/index.html b/docs/2016-10/index.html index 3a3023400..8ce5b8fc5 100644 --- a/docs/2016-10/index.html +++ b/docs/2016-10/index.html @@ -42,7 +42,7 @@ I exported a random item’s metadata as CSV, deleted all columns except id 0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X "/> - + @@ -374,14 +374,14 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-11/index.html b/docs/2016-11/index.html index bc5f36df3..6b5e6ea6f 100644 --- a/docs/2016-11/index.html +++ b/docs/2016-11/index.html @@ -26,7 +26,7 @@ Add dc.type to the output options for Atmire’s Listings and Reports module Add dc.type to the output options for Atmire’s Listings and Reports module (#286) "/> - + @@ -550,14 +550,14 @@ org.dspace.discovery.SearchServiceException: Error executing query
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2016-12/index.html b/docs/2016-12/index.html index 90a778f10..13a19d9ef 100644 --- a/docs/2016-12/index.html +++ b/docs/2016-12/index.html @@ -46,7 +46,7 @@ I see thousands of them in the logs for the last few months, so it’s not r I’ve raised a ticket with Atmire to ask Another worrying error from dspace.log is: "/> - + @@ -786,14 +786,14 @@ $ exit
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-01/index.html b/docs/2017-01/index.html index 2c218fa57..842972f20 100644 --- a/docs/2017-01/index.html +++ b/docs/2017-01/index.html @@ -28,7 +28,7 @@ I checked to see if the Solr sharding task that is supposed to run on January 1s I tested on DSpace Test as well and it doesn’t work there either I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years "/> - + @@ -371,14 +371,14 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-02/index.html b/docs/2017-02/index.html index 529cab73f..11e881259 100644 --- a/docs/2017-02/index.html +++ b/docs/2017-02/index.html @@ -50,7 +50,7 @@ DELETE 1 Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301) Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name "/> - + @@ -426,14 +426,14 @@ COPY 1968
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-03/index.html b/docs/2017-03/index.html index f3afd852e..ac14c8d15 100644 --- a/docs/2017-03/index.html +++ b/docs/2017-03/index.html @@ -54,7 +54,7 @@ Interestingly, it seems DSpace 4.x’s thumbnails were sRGB, but forcing reg $ identify ~/Desktop/alc_contrastes_desafios.jpg /Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000 "/> - + @@ -357,14 +357,14 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-04/index.html b/docs/2017-04/index.html index 77e0b3660..59af21292 100644 --- a/docs/2017-04/index.html +++ b/docs/2017-04/index.html @@ -40,7 +40,7 @@ Testing the CMYK patch on a collection with 650 items: $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt "/> - + @@ -587,14 +587,14 @@ $ gem install compass -v 1.0.3
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-05/index.html b/docs/2017-05/index.html index ad99adfba..6b925ea6a 100644 --- a/docs/2017-05/index.html +++ b/docs/2017-05/index.html @@ -18,7 +18,7 @@ - + @@ -393,14 +393,14 @@ UPDATE 187
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-06/index.html b/docs/2017-06/index.html index 11a5f8883..a2b26d3f4 100644 --- a/docs/2017-06/index.html +++ b/docs/2017-06/index.html @@ -18,7 +18,7 @@ - + @@ -272,14 +272,14 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-07/index.html b/docs/2017-07/index.html index 749fd04f6..2adcddc21 100644 --- a/docs/2017-07/index.html +++ b/docs/2017-07/index.html @@ -36,7 +36,7 @@ Merge changes for WLE Phase II theme rename (#329) Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace We can use PostgreSQL’s extended output format (-x) plus sed to format the output into quasi XML: "/> - + @@ -277,14 +277,14 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-08/index.html b/docs/2017-08/index.html index 5a32b6673..e0880bd47 100644 --- a/docs/2017-08/index.html +++ b/docs/2017-08/index.html @@ -60,7 +60,7 @@ This was due to newline characters in the dc.description.abstract column, which I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet "/> - + @@ -519,14 +519,14 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-09/index.html b/docs/2017-09/index.html index fd6fe755c..5722370f7 100644 --- a/docs/2017-09/index.html +++ b/docs/2017-09/index.html @@ -32,7 +32,7 @@ Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account is both in the approvers step as well as the group "/> - + @@ -661,14 +661,14 @@ Cert Status: good
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-10/index.html b/docs/2017-10/index.html index 4d5fd1623..4f9143ad8 100644 --- a/docs/2017-10/index.html +++ b/docs/2017-10/index.html @@ -34,7 +34,7 @@ http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336 There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections "/> - + @@ -445,14 +445,14 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-11/index.html b/docs/2017-11/index.html index 2c66ec310..a5684eea5 100644 --- a/docs/2017-11/index.html +++ b/docs/2017-11/index.html @@ -48,7 +48,7 @@ Generate list of authors on CGSpace for Peter to go through and correct: dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv; COPY 54701 "/> - + @@ -946,14 +946,14 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2017-12/index.html b/docs/2017-12/index.html index 38a9dbf65..7d1d58249 100644 --- a/docs/2017-12/index.html +++ b/docs/2017-12/index.html @@ -30,7 +30,7 @@ The logs say “Timeout waiting for idle object” PostgreSQL activity says there are 115 connections currently The list of connections to XMLUI and REST API for today: "/> - + @@ -785,14 +785,14 @@ DELETE 20
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-01/index.html b/docs/2018-01/index.html index 2ae8a7b62..541e5eed0 100644 --- a/docs/2018-01/index.html +++ b/docs/2018-01/index.html @@ -150,7 +150,7 @@ dspace.log.2018-01-02:34 Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains "/> - + @@ -1454,14 +1454,14 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-02/index.html b/docs/2018-02/index.html index b4068c12d..857bc6b52 100644 --- a/docs/2018-02/index.html +++ b/docs/2018-02/index.html @@ -30,7 +30,7 @@ We don’t need to distinguish between internal and external works, so that Yesterday I figured out how to monitor DSpace sessions using JMX I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu’s munin-plugins-java package and used the stuff I discovered about JMX in 2018-01 "/> - + @@ -1041,14 +1041,14 @@ UPDATE 3
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-03/index.html b/docs/2018-03/index.html index 78d0a52de..d029d9ece 100644 --- a/docs/2018-03/index.html +++ b/docs/2018-03/index.html @@ -24,7 +24,7 @@ Export a CSV of the IITA community metadata for Martin Mueller Export a CSV of the IITA community metadata for Martin Mueller "/> - + @@ -587,14 +587,14 @@ Fixed 5 occurences of: GENEBANKS
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-04/index.html b/docs/2018-04/index.html index 6f59a586b..d379fab8a 100644 --- a/docs/2018-04/index.html +++ b/docs/2018-04/index.html @@ -26,7 +26,7 @@ Catalina logs at least show some memory errors yesterday: I tried to test something on DSpace Test but noticed that it’s down since god knows when Catalina logs at least show some memory errors yesterday: "/> - + @@ -596,14 +596,14 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-05/index.html b/docs/2018-05/index.html index 191e695a4..dd5a3c3c0 100644 --- a/docs/2018-05/index.html +++ b/docs/2018-05/index.html @@ -38,7 +38,7 @@ http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E Then I reduced the JVM heap size from 6144 back to 5120m Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the Ansible infrastructure scripts to support hosts choosing which distribution they want to use "/> - + @@ -525,14 +525,14 @@ $ psql -h localhost -U postgres dspacetest
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-06/index.html b/docs/2018-06/index.html index 53d8a48ae..bf61b00c5 100644 --- a/docs/2018-06/index.html +++ b/docs/2018-06/index.html @@ -58,7 +58,7 @@ real 74m42.646s user 8m5.056s sys 2m7.289s "/> - + @@ -519,14 +519,14 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-07/index.html b/docs/2018-07/index.html index 7b97a955e..a3d0321b3 100644 --- a/docs/2018-07/index.html +++ b/docs/2018-07/index.html @@ -36,7 +36,7 @@ During the mvn package stage on the 5.8 branch I kept getting issues with java r There is insufficient memory for the Java Runtime Environment to continue. "/> - + @@ -571,14 +571,14 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-08/index.html b/docs/2018-08/index.html index ae6a4e16d..d4a7010b9 100644 --- a/docs/2018-08/index.html +++ b/docs/2018-08/index.html @@ -46,7 +46,7 @@ Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes I ran all system updates on DSpace Test and rebooted it "/> - + @@ -444,14 +444,14 @@ $ dspace database migrate ignored
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-09/index.html b/docs/2018-09/index.html index bd8d0da31..db1620fbb 100644 --- a/docs/2018-09/index.html +++ b/docs/2018-09/index.html @@ -30,7 +30,7 @@ I’ll update the DSpace role in our Ansible infrastructure playbooks and ru Also, I’ll re-run the postgresql tasks because the custom PostgreSQL variables are dynamic according to the system’s RAM, and we never re-ran them after migrating to larger Linodes last month I’m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I’m getting those autowire errors in Tomcat 8.5.30 again: "/> - + @@ -750,14 +750,14 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-10/index.html b/docs/2018-10/index.html index da4dc3910..18a1ee687 100644 --- a/docs/2018-10/index.html +++ b/docs/2018-10/index.html @@ -26,7 +26,7 @@ I created a GitHub issue to track this #389, because I’m super busy in Nai Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now "/> - + @@ -658,14 +658,14 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-11/index.html b/docs/2018-11/index.html index 274272f69..a68ce33f9 100644 --- a/docs/2018-11/index.html +++ b/docs/2018-11/index.html @@ -36,7 +36,7 @@ Send a note about my dspace-statistics-api to the dspace-tech mailing list Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage Today these are the top 10 IPs: "/> - + @@ -555,14 +555,14 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2018-12/index.html b/docs/2018-12/index.html index 8aae7a3a5..011f4a007 100644 --- a/docs/2018-12/index.html +++ b/docs/2018-12/index.html @@ -36,7 +36,7 @@ Then I ran all system updates and restarted the server I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another Ghostscript vulnerability last week "/> - + @@ -596,14 +596,14 @@ UPDATE 1
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-01/index.html b/docs/2019-01/index.html index 6f6d1ddfe..8d9a83ce2 100644 --- a/docs/2019-01/index.html +++ b/docs/2019-01/index.html @@ -50,7 +50,7 @@ I don’t see anything interesting in the web server logs around that time t 357 207.46.13.1 903 54.70.40.11 "/> - + @@ -1266,14 +1266,14 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-02/index.html b/docs/2019-02/index.html index c63cf7abc..ef8462a0e 100644 --- a/docs/2019-02/index.html +++ b/docs/2019-02/index.html @@ -72,7 +72,7 @@ real 0m19.873s user 0m22.203s sys 0m1.979s "/> - + @@ -1346,14 +1346,14 @@ Please see the DSpace documentation for assistance.
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-03/index.html b/docs/2019-03/index.html index 767b98728..deb9c8dc8 100644 --- a/docs/2019-03/index.html +++ b/docs/2019-03/index.html @@ -46,7 +46,7 @@ Most worryingly, there are encoding errors in the abstracts for eleven items, fo I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs "/> - + @@ -1210,14 +1210,14 @@ sys 0m2.551s
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-04/index.html b/docs/2019-04/index.html index 050aee3e2..2310281d7 100644 --- a/docs/2019-04/index.html +++ b/docs/2019-04/index.html @@ -64,7 +64,7 @@ $ ./fix-metadata-values.py -i /tmp/2019-02-21-fix-4-regions.csv -db dspace -u ds $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-2-countries.csv -db dspace -u dspace -p 'fuuu' -m 228 -f cg.coverage.country -d $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace -u dspace -p 'fuuu' -m 231 -f cg.coverage.region -d "/> - + @@ -1301,14 +1301,14 @@ UPDATE 14
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-05/index.html b/docs/2019-05/index.html index 168b3e71d..521c00d36 100644 --- a/docs/2019-05/index.html +++ b/docs/2019-05/index.html @@ -48,7 +48,7 @@ DELETE 1 But after this I tried to delete the item from the XMLUI and it is still present… "/> - + @@ -633,14 +633,14 @@ COPY 64871
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-06/index.html b/docs/2019-06/index.html index 7231c2d5a..5bc41ac59 100644 --- a/docs/2019-06/index.html +++ b/docs/2019-06/index.html @@ -34,7 +34,7 @@ Run system updates on CGSpace (linode18) and reboot it Skype with Marie-Angélique and Abenet about CG Core v2 "/> - + @@ -319,14 +319,14 @@ UPDATE 2
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-07/index.html b/docs/2019-07/index.html index d13817f52..2b7dc59fe 100644 --- a/docs/2019-07/index.html +++ b/docs/2019-07/index.html @@ -38,7 +38,7 @@ CGSpace Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community "/> - + @@ -556,14 +556,14 @@ issn.validate('1020-3362')
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-08/index.html b/docs/2019-08/index.html index db91c749a..e559207d1 100644 --- a/docs/2019-08/index.html +++ b/docs/2019-08/index.html @@ -46,7 +46,7 @@ After rebooting, all statistics cores were loaded… wow, that’s luck Run system updates on DSpace Test (linode19) and reboot it "/> - + @@ -575,14 +575,14 @@ sys 2m27.496s
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-09/index.html b/docs/2019-09/index.html index 11fe1abd3..68a68adda 100644 --- a/docs/2019-09/index.html +++ b/docs/2019-09/index.html @@ -72,7 +72,7 @@ Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning: 7249 2a01:7e00::f03c:91ff:fe18:7396 9124 45.5.186.2 "/> - + @@ -583,14 +583,14 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-10/index.html b/docs/2019-10/index.html index 230b346aa..2c1b4fc9a 100644 --- a/docs/2019-10/index.html +++ b/docs/2019-10/index.html @@ -18,7 +18,7 @@ - + @@ -387,14 +387,14 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-11/index.html b/docs/2019-11/index.html index 15dedcd9d..9322b731f 100644 --- a/docs/2019-11/index.html +++ b/docs/2019-11/index.html @@ -58,7 +58,7 @@ Let’s see how many of the REST API requests were for bitstreams (because t # zcat --force /var/log/nginx/rest.log.*.gz | grep -E "[0-9]{1,2}/Oct/2019" | grep -c -E "/rest/bitstreams" 106781 "/> - + @@ -694,14 +694,14 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2019-12/index.html b/docs/2019-12/index.html index 6a0463cbf..ddc21d83a 100644 --- a/docs/2019-12/index.html +++ b/docs/2019-12/index.html @@ -46,7 +46,7 @@ Make sure all packages are up to date and the package manager is up to date, the # dpkg -C # reboot "/> - + @@ -406,14 +406,14 @@ UPDATE 1
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-01/index.html b/docs/2020-01/index.html index 45744f6d3..21f9c3beb 100644 --- a/docs/2020-01/index.html +++ b/docs/2020-01/index.html @@ -56,7 +56,7 @@ I tweeted the CGSpace repository link "/> - + @@ -606,14 +606,14 @@ COPY 2900
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-02/index.html b/docs/2020-02/index.html index 5a796641d..d2b1b55e9 100644 --- a/docs/2020-02/index.html +++ b/docs/2020-02/index.html @@ -38,7 +38,7 @@ The code finally builds and runs with a fresh install "/> - + @@ -1277,14 +1277,14 @@ Moving: 21993 into core statistics-2019
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-03/index.html b/docs/2020-03/index.html index 6568c8411..80a971fad 100644 --- a/docs/2020-03/index.html +++ b/docs/2020-03/index.html @@ -42,7 +42,7 @@ You need to download this into the DSpace 6.x source and compile it "/> - + @@ -486,14 +486,14 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-04/index.html b/docs/2020-04/index.html index d04270d36..96b6b7e35 100644 --- a/docs/2020-04/index.html +++ b/docs/2020-04/index.html @@ -48,7 +48,7 @@ The third item now has a donut with score 1 since I tweeted it last week On the same note, the one item Abenet pointed out last week now has a donut with score of 104 after I tweeted it last week "/> - + @@ -660,14 +660,14 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-05/index.html b/docs/2020-05/index.html index dbdd5cb65..8992c610a 100644 --- a/docs/2020-05/index.html +++ b/docs/2020-05/index.html @@ -34,7 +34,7 @@ I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2 "/> - + @@ -479,14 +479,14 @@ Caused by: java.lang.NullPointerException
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-06/index.html b/docs/2020-06/index.html index 1254d317b..b0c4f15c0 100644 --- a/docs/2020-06/index.html +++ b/docs/2020-06/index.html @@ -36,7 +36,7 @@ I sent Atmire the dspace.log from today and told them to log into the server to In other news, I checked the statistics API on DSpace 6 and it’s working I tried to build the OAI registry on the freshly migrated DSpace 6 on DSpace Test and I get an error: "/> - + @@ -813,14 +813,14 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-07/index.html b/docs/2020-07/index.html index a362d436d..aedbba61b 100644 --- a/docs/2020-07/index.html +++ b/docs/2020-07/index.html @@ -38,7 +38,7 @@ I restarted Tomcat and PostgreSQL and the issue was gone Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the 5_x-prod branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter’s request "/> - + @@ -1144,14 +1144,14 @@ Fixed 4 occurences of: Muloi, D.M.
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-08/index.html b/docs/2020-08/index.html index 7d68dd846..50178b608 100644 --- a/docs/2020-08/index.html +++ b/docs/2020-08/index.html @@ -36,7 +36,7 @@ It is class based so I can easily add support for other vocabularies, and the te "/> - + @@ -800,14 +800,14 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-09/index.html b/docs/2020-09/index.html index 6a2416a83..2bb1aa96d 100644 --- a/docs/2020-09/index.html +++ b/docs/2020-09/index.html @@ -48,7 +48,7 @@ I filed a bug on OpenRXV: https://github.com/ilri/OpenRXV/issues/39 I filed an issue on OpenRXV to make some minor edits to the admin UI: https://github.com/ilri/OpenRXV/issues/40 "/> - + @@ -719,14 +719,14 @@ solr_query_params = {
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-10/index.html b/docs/2020-10/index.html index d27131df5..64245d1ff 100644 --- a/docs/2020-10/index.html +++ b/docs/2020-10/index.html @@ -44,7 +44,7 @@ During the FlywayDB migration I got an error: "/> - + @@ -1243,14 +1243,14 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-11/index.html b/docs/2020-11/index.html index 94e9e1d4d..f93bb1b32 100644 --- a/docs/2020-11/index.html +++ b/docs/2020-11/index.html @@ -32,7 +32,7 @@ So far we’ve spent at least fifty hours to process the statistics and stat "/> - + @@ -733,14 +733,14 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2020-12/index.html b/docs/2020-12/index.html index a4b83cd2b..e104b9983 100644 --- a/docs/2020-12/index.html +++ b/docs/2020-12/index.html @@ -36,7 +36,7 @@ I started processing those (about 411,000 records): "/> - + @@ -871,14 +871,14 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-2020-12-29?pretty'
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2021-01/index.html b/docs/2021-01/index.html index 32d476521..97a010678 100644 --- a/docs/2021-01/index.html +++ b/docs/2021-01/index.html @@ -50,7 +50,7 @@ For example, this item has 51 views on CGSpace, but 0 on AReS "/> - + @@ -690,14 +690,14 @@ java.lang.IllegalArgumentException: Invalid character found in the request targe
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2021-02/index.html b/docs/2021-02/index.html index 26346564f..e7e0fdba4 100644 --- a/docs/2021-02/index.html +++ b/docs/2021-02/index.html @@ -60,7 +60,7 @@ $ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty } } "/> - + @@ -900,14 +900,14 @@ dspace.log.2021-02-28:0
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2021-03/index.html b/docs/2021-03/index.html index 53a48bd9b..48a14b863 100644 --- a/docs/2021-03/index.html +++ b/docs/2021-03/index.html @@ -34,7 +34,7 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst "/> - + @@ -877,14 +877,14 @@ COPY 3081
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2021-04/index.html b/docs/2021-04/index.html index 866bed0ee..0f09236bd 100644 --- a/docs/2021-04/index.html +++ b/docs/2021-04/index.html @@ -44,7 +44,7 @@ Perhaps one of the containers crashed, I should have looked closer but I was in "/> - + @@ -1044,14 +1044,14 @@ $ ./ilri/doi-to-handle.py -i /tmp/dois.txt -o /tmp/handles.csv -db dspace63 -u d
  • June, 2021
    • +
  • July, 2021
    • +
  • May, 2021
  • April, 2021
  • March, 2021
    • -
  • CGSpace CG Core v2 Migration
    • - diff --git a/docs/2021-05/index.html b/docs/2021-05/index.html index 799dc4580..a5d346b1f 100644 --- a/docs/2021-05/index.html +++ b/docs/2021-05/index.html @@ -20,7 +20,7 @@ I will add the RI/1.0 pattern to our DSpace agents overload and purge them from - + @@ -36,7 +36,7 @@ I looked at the top user agents and IPs in the Solr statistics for last month an I will add the RI/1.0 pattern to our DSpace agents overload and purge them from Solr (we had previously seen this agent with 9,000 hits or so in 2020-09), but I think I will leave the Microsoft Word one… as that’s an actual user… "/> - + @@ -48,7 +48,7 @@ I will add the RI/1.0 pattern to our DSpace agents overload and purge them from "url": "https://alanorth.github.io/cgspace-notes/2021-05/", "wordCount": "3605", "datePublished": "2021-05-02T09:50:54+03:00", - "dateModified": "2021-05-30T22:09:06+03:00", + "dateModified": "2021-07-06T17:03:55+03:00", "author": { "@type": "Person", "name": "Alan Orth" @@ -522,7 +522,7 @@ UPDATE 47405 COPY 5000 $ csvcut -c 1 /tmp/2021-05-20-agrovoc.csv| sed 1d > /tmp/2021-05-20-agrovoc.txt $ ./ilri/agrovoc-lookup.py -i /tmp/2021-05-20-agrovoc.txt -o /tmp/2021-05-20-agrovoc-results.csv -$ csvgrep -c "number of matches" -m 0 /tmp/2021-05-20-agrovoc-results.csv > /tmp/2021-05-20-agrovoc-rejected.csv +$ csvgrep -c "number of matches" -r '^0$' /tmp/2021-05-20-agrovoc-results.csv > /tmp/2021-05-20-agrovoc-rejected.csv