Add notes for 2021-01-18

content/posts/2021-01.md

@@ -205,4 +205,64 @@ $ dspace community-filiator --remove --parent=10568/66598 --child=10568/106605
 - Publish [v1.4.1 of the DSpace Statistics API](https://github.com/ilri/dspace-statistics-api/releases/tag/v1.4.1) based on feedback from the community
   - This includes the fix for limiting the Solr query to UUIDs
 
+## 2021-01-17
+
+- Start a re-index on AReS
+  - First delete the old Elasticsearch temp index:
+
+```console
+$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
+# start indexing in AReS
+```
+
+- Then, the next morning when it's done, check the results of the harvesting, backup the current `openrxv-items` index, and clone the `openrxv-items-temp` index to `openrxv-items`:
+
+```console
+$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'
+{
+  "count" : 100540,
+  "_shards" : {
+    "total" : 1,
+    "successful" : 1,
+    "skipped" : 0,
+    "failed" : 0
+  }
+}
+$ curl -X PUT "localhost:9200/openrxv-items/_settings" -H 'Content-Type: application/json' -d'{"settings": {"index.blocks.write": true}}'
+$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-01-18
+$ curl -XDELETE 'http://localhost:9200/openrxv-items'
+$ curl -X PUT "localhost:9200/openrxv-items-temp/_settings" -H 'Content-Type: application/json' -d'{"settings": {"index.blocks.write": true}}'
+$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
+$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
+$ curl -XDELETE 'http://localhost:9200/openrxv-items-2021-01-18'
+```
+
+## 2021-01-18
+
+- Finish the indexing on AReS that I started yesterday
+- Udana from IWMI emailed me to ask why the iwmi.csv doesn't include items he approved to CGSpace this morning
+  - I told him it is generated every Sunday night
+  - I regenerated the file manually for him
+  - I adjusted the script to run on Monday and Friday
+- Meeting with Peter and Abenet about CG Core v2
+  - We also need to remove CTA and CPWF subjects from the input form since they are both closed now and no longer submitting items
+  - Peter also wants to create new fields on CGSpace for the SDGs and CGIAR Impact Areas
+    - I suggested `cg.subject.sdg` and `cg.subject.impactArea`
+  - We also agreed to remove the following fields:
+    - cg.livestock.agegroup
+    - cg.livestock.function
+    - cg.message.sms
+    - cg.message.voice
+  - I removed them from the input form, metadata registry, and deleted all the values in the database:
+
+```
+localhost/dspace63= > BEGIN;
+localhost/dspace63= > DELETE FROM metadatavalue WHERE metadata_field_id IN (115, 116, 117, 118);
+DELETE 27
+localhost/dspace63= > COMMIT;
+```
+
+- I submitted [an issue](https://github.com/AgriculturalSemantics/cg-core/issues/31) to CG Core v2 to propose standardizing the camel case convention for a few more fields of ours
+- I submitted [an issue](https://github.com/AgriculturalSemantics/cg-core/issues/32) to CG Core v2 to propose removing `cg.series` and `cg.pages` in favor of `dcterms.isPartOf` and `dcterms.extent`, respectively
+
 <!-- vim: set sw=2 ts=2: -->

docs/2021-01/index.html

@@ -27,7 +27,7 @@ For example, this item has 51 views on CGSpace, but 0 on AReS
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-01/" />
 <meta property="article:published_time" content="2021-01-03T10:13:54+02:00" />
-<meta property="article:modified_time" content="2021-01-13T15:44:47+02:00" />
+<meta property="article:modified_time" content="2021-01-14T16:27:57+02:00" />
 
 
 
@@ -60,9 +60,9 @@ For example, this item has 51 views on CGSpace, but 0 on AReS
   "@type": "BlogPosting",
   "headline": "January, 2021",
   "url": "https://alanorth.github.io/cgspace-notes/2021-01/",
-  "wordCount": "1515",
+  "wordCount": "1834",
   "datePublished": "2021-01-03T10:13:54+02:00",
-  "dateModified": "2021-01-13T15:44:47+02:00",
+  "dateModified": "2021-01-14T16:27:57+02:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -385,6 +385,74 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
 </ul>
 </li>
 </ul>
+<h2 id="2021-01-17">2021-01-17</h2>
+<ul>
+<li>Start a re-index on AReS
+<ul>
+<li>First delete the old Elasticsearch temp index:</li>
+</ul>
+</li>
+</ul>
+<pre><code class="language-console" data-lang="console">$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
+# start indexing in AReS
+</code></pre><ul>
+<li>Then, the next morning when it&rsquo;s done, check the results of the harvesting, backup the current <code>openrxv-items</code> index, and clone the <code>openrxv-items-temp</code> index to <code>openrxv-items</code>:</li>
+</ul>
+<pre><code class="language-console" data-lang="console">$ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&amp;pretty'
+{
+  &quot;count&quot; : 100540,
+  &quot;_shards&quot; : {
+    &quot;total&quot; : 1,
+    &quot;successful&quot; : 1,
+    &quot;skipped&quot; : 0,
+    &quot;failed&quot; : 0
+  }
+}
+$ curl -X PUT &quot;localhost:9200/openrxv-items/_settings&quot; -H 'Content-Type: application/json' -d'{&quot;settings&quot;: {&quot;index.blocks.write&quot;: true}}'
+$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-01-18
+$ curl -XDELETE 'http://localhost:9200/openrxv-items'
+$ curl -X PUT &quot;localhost:9200/openrxv-items-temp/_settings&quot; -H 'Content-Type: application/json' -d'{&quot;settings&quot;: {&quot;index.blocks.write&quot;: true}}'
+$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
+$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
+$ curl -XDELETE 'http://localhost:9200/openrxv-items-2021-01-18'
+</code></pre><h2 id="2021-01-18">2021-01-18</h2>
+<ul>
+<li>Finish the indexing on AReS that I started yesterday</li>
+<li>Udana from IWMI emailed me to ask why the iwmi.csv doesn&rsquo;t include items he approved to CGSpace this morning
+<ul>
+<li>I told him it is generated every Sunday night</li>
+<li>I regenerated the file manually for him</li>
+<li>I adjusted the script to run on Monday and Friday</li>
+</ul>
+</li>
+<li>Meeting with Peter and Abenet about CG Core v2
+<ul>
+<li>We also need to remove CTA and CPWF subjects from the input form since they are both closed now and no longer submitting items</li>
+<li>Peter also wants to create new fields on CGSpace for the SDGs and CGIAR Impact Areas
+<ul>
+<li>I suggested <code>cg.subject.sdg</code> and <code>cg.subject.impactArea</code></li>
+</ul>
+</li>
+<li>We also agreed to remove the following fields:
+<ul>
+<li>cg.livestock.agegroup</li>
+<li>cg.livestock.function</li>
+<li>cg.message.sms</li>
+<li>cg.message.voice</li>
+</ul>
+</li>
+<li>I removed them from the input form, metadata registry, and deleted all the values in the database:</li>
+</ul>
+</li>
+</ul>
+<pre><code>localhost/dspace63= &gt; BEGIN;
+localhost/dspace63= &gt; DELETE FROM metadatavalue WHERE metadata_field_id IN (115, 116, 117, 118);
+DELETE 27
+localhost/dspace63= &gt; COMMIT;
+</code></pre><ul>
+<li>I submitted <a href="https://github.com/AgriculturalSemantics/cg-core/issues/31">an issue</a> to CG Core v2 to propose standardizing the camel case convention for a few more fields of ours</li>
+<li>I submitted <a href="https://github.com/AgriculturalSemantics/cg-core/issues/32">an issue</a> to CG Core v2 to propose removing <code>cg.series</code> and <code>cg.pages</code> in favor of <code>dcterms.isPartOf</code> and <code>dcterms.extent</code>, respectively</li>
+</ul>
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@@ -10,7 +10,7 @@
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 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
-<meta property="og:updated_time" content="2021-01-13T15:44:47+02:00" />
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 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
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docs/cgspace-cgcorev2-migration/index.html

@@ -11,7 +11,7 @@
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/" />
 <meta property="article:published_time" content="2019-10-28T13:27:35+02:00" />
-<meta property="article:modified_time" content="2020-04-13T15:30:24+03:00" />
+<meta property="article:modified_time" content="2021-01-18T16:20:57+02:00" />
 
 
 
@@ -30,7 +30,7 @@
   "url": "https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/",
   "wordCount": "555",
   "datePublished": "2019-10-28T13:27:35+02:00",
-  "dateModified": "2020-04-13T15:30:24+03:00",
+  "dateModified": "2021-01-18T16:20:57+02:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -116,7 +116,7 @@
 <li><a href="#implementation-progress">Implementation Progress</a></li>
 </ul>
 <h2 id="proposed-changes">Proposed Changes</h2>
-<p>As of 2019-12-22 the scope of the changes includes the following fields:</p>
+<p>As of 2021-01-18 the scope of the changes includes the following fields:</p>
 <ul>
 <li>cg.creator.id→cg.creator.identifier
 <ul>
@@ -132,8 +132,8 @@
 <li>values from CrossRef or Grid.ac if possible</li>
 </ul>
 </li>
-<li>dc.description.version→cg.review-status</li>
+<li>dc.description.version→cg.reviewStatus</li>
-<li>cg.fulltextstatus→cg.howpublished
+<li>cg.fulltextstatus→cg.howPublished
 <ul>
 <li>CGSpace uses values like &ldquo;Formally Published&rdquo; or &ldquo;Grey Literature&rdquo;</li>
 </ul>
@@ -179,13 +179,13 @@
 <h2 id="fields-to-create">Fields to Create</h2>
 <p>Make sure the following fields exist:</p>
 <ul>
-<li><input checked="" disabled="" type="checkbox"> cg.creator.identifier (242)</li>
+<li>[] cg.creator.identifier</li>
-<li><input checked="" disabled="" type="checkbox"> cg.contributor.donor (243)</li>
+<li>[] cg.contributor.donor</li>
-<li><input checked="" disabled="" type="checkbox"> cg.review-status (244)</li>
+<li>[] cg.reviewStatus</li>
-<li><input checked="" disabled="" type="checkbox"> cg.howpublished (245)</li>
+<li>[] cg.howPublished</li>
-<li><input checked="" disabled="" type="checkbox"> cg.journal (246)</li>
+<li>[] cg.journal</li>
-<li><input checked="" disabled="" type="checkbox"> cg.isbn (247)</li>
+<li>[] cg.isbn</li>
-<li><input checked="" disabled="" type="checkbox"> cg.issn (248)</li>
+<li>[] cg.issn</li>
 </ul>
 <h2 id="fields-to-delete">Fields to delete</h2>
 <p>Fields to delete after migration:</p>

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 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
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 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
-<meta property="og:updated_time" content="2021-01-13T15:44:47+02:00" />
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@@ -4,27 +4,27 @@
   
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-    <lastmod>2021-01-13T15:44:47+02:00</lastmod>
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   <url>
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   <url>
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@@ -114,7 +114,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/</loc>
-    <lastmod>2020-04-13T15:30:24+03:00</lastmod>
+    <lastmod>2021-01-18T16:20:57+02:00</lastmod>
   </url>
   
   <url>

docs/tags/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
-<meta property="og:updated_time" content="2020-12-01T19:15:48+02:00" />
+<meta property="og:updated_time" content="2021-01-18T16:20:57+02:00" />
 
 
 

docs/tags/migration/index.html

@@ -10,7 +10,7 @@
 <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/migration/" />
-<meta property="og:updated_time" content="2020-12-01T19:15:48+02:00" />
+<meta property="og:updated_time" content="2021-01-18T16:20:57+02:00" />