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Add notes for 2021-08-05
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@ -60,4 +60,33 @@ categories: ["Notes"]
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- Now it seems to be verified (all green): https://www.openarchives.org/Register/ValidateSite?log=R23ZWX85
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- We are listed in the OpenArchives list of databases conforming to OAI 2.0
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## 2021-08-03
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- Run fresh re-harvest on AReS
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## 2021-08-05
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- Have a quick call with Mishell Portilla from CIP about a journal article that was flagged as being in a predatory journal (Beall's List)
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- We agreed to unmap it from RTB's collection for now, and I asked for advice from Peter and Abenet for what to do in the future
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- A developer from the Alliance asked for access to the CGSpace database so they can make some integration with PowerBI
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- I told them we don't allow direct database access, and that it would be tricky anyways (that's what APIs are for!)
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- I'm curious if there are still any requests coming in to CGSpace from the abusive Russian networks
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- I extracted all the unique IPs that nginx processed in the last week:
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```console
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# zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 /var/log/nginx/access.log.2 /var/log/nginx/access.log.3 /var/log/nginx/access.log.4 /var/log/nginx/access.log.5 /var/log/nginx/access.log.6 /var/log/nginx/access.log.7 /var/log/nginx/access.log.8 | grep -E " (200|499) " | grep -v -E "(mahider|Googlebot|Turnitin|Grammarly|Unpaywall|UptimeRobot|bot)" | awk '{print $1}' | sort | uniq > /tmp/2021-08-05-all-ips.txt
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# wc -l /tmp/2021-08-05-all-ips.txt
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43428 /tmp/2021-08-05-all-ips.txt
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```
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- Already I can see that the total is much less than during the attack on one weekend last month (over 50,000!)
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- Indeed, now I see that there are no IPs from those networks coming in now:
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```console
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$ ./ilri/resolve-addresses-geoip2.py -i /tmp/2021-08-05-all-ips.txt -o /tmp/2021-08-05-all-ips.csv
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$ csvgrep -c asn -r '^(49453|46844|206485|62282|36352|35913|35624|8100)$' /tmp/2021-08-05-all-ips.csv | csvcut -c ip | sed 1d | sort | uniq > /tmp/2021-08-05-all-ips-to-purge.csv
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$ wc -l /tmp/2021-08-05-all-ips-to-purge.csv
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0 /tmp/2021-08-05-all-ips-to-purge.csv
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```
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<!-- vim: set sw=2 ts=2: -->
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@ -34,7 +34,7 @@ Last week I had increased the limit from 30 to 60, which seemed to help, but now
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$ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace
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78
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@ -36,7 +36,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
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-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
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-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
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@ -28,7 +28,7 @@ Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_
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I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.
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Update GitHub wiki for documentation of maintenance tasks.
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@ -38,7 +38,7 @@ I noticed we have a very interesting list of countries on CGSpace:
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Not only are there 49,000 countries, we have some blanks (25)…
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Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”
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@ -28,7 +28,7 @@ Looking at issues with author authorities on CGSpace
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For some reason we still have the index-lucene-update cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module
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Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server
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@ -32,7 +32,7 @@ After running DSpace for over five years I’ve never needed to look in any
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This will save us a few gigs of backup space we’re paying for on S3
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Also, I noticed the checker log has some errors we should pay attention to:
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@ -34,7 +34,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
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# awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
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3168
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@ -34,7 +34,7 @@ This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRec
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You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets
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Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship
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@ -44,7 +44,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
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In this case the select query was showing 95 results before the update
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@ -42,7 +42,7 @@ $ git checkout -b 55new 5_x-prod
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$ git reset --hard ilri/5_x-prod
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$ git rebase -i dspace-5.5
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@ -34,7 +34,7 @@ It looks like we might be able to use OUs now, instead of DCs:
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$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)"
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@ -42,7 +42,7 @@ I exported a random item’s metadata as CSV, deleted all columns except id
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0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
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@ -26,7 +26,7 @@ Add dc.type to the output options for Atmire’s Listings and Reports module
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Add dc.type to the output options for Atmire’s Listings and Reports module (#286)
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"/>
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@ -46,7 +46,7 @@ I see thousands of them in the logs for the last few months, so it’s not r
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I’ve raised a ticket with Atmire to ask
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Another worrying error from dspace.log is:
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@ -28,7 +28,7 @@ I checked to see if the Solr sharding task that is supposed to run on January 1s
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I tested on DSpace Test as well and it doesn’t work there either
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I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years
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@ -50,7 +50,7 @@ DELETE 1
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Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
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Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name
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@ -54,7 +54,7 @@ Interestingly, it seems DSpace 4.x’s thumbnails were sRGB, but forcing reg
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$ identify ~/Desktop/alc_contrastes_desafios.jpg
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/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
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@ -40,7 +40,7 @@ Testing the CMYK patch on a collection with 650 items:
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$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
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@ -18,7 +18,7 @@
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="May, 2017"/>
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<meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it’s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire’s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
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@ -18,7 +18,7 @@
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="June, 2017"/>
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<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we’ll create a new sub-community for Phase II and create collections for the research themes there The current “Research Themes” community will be renamed to “WLE Phase I Research Themes” Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
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@ -36,7 +36,7 @@ Merge changes for WLE Phase II theme rename (#329)
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Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace
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We can use PostgreSQL’s extended output format (-x) plus sed to format the output into quasi XML:
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@ -60,7 +60,7 @@ This was due to newline characters in the dc.description.abstract column, which
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I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d
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Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet
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@ -32,7 +32,7 @@ Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two
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Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account is both in the approvers step as well as the group
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There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine
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Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections
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dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
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COPY 54701
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PostgreSQL activity says there are 115 connections currently
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The list of connections to XMLUI and REST API for today:
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@ -150,7 +150,7 @@ dspace.log.2018-01-02:34
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Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains
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Yesterday I figured out how to monitor DSpace sessions using JMX
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I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu’s munin-plugins-java package and used the stuff I discovered about JMX in 2018-01
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@ -24,7 +24,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
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Export a CSV of the IITA community metadata for Martin Mueller
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I tried to test something on DSpace Test but noticed that it’s down since god knows when
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Catalina logs at least show some memory errors yesterday:
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Then I reduced the JVM heap size from 6144 back to 5120m
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Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the Ansible infrastructure scripts to support hosts choosing which distribution they want to use
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@ -58,7 +58,7 @@ real 74m42.646s
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user 8m5.056s
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sys 2m7.289s
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"/>
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There is insufficient memory for the Java Runtime Environment to continue.
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The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes
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I ran all system updates on DSpace Test and rebooted it
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Also, I’ll re-run the postgresql tasks because the custom PostgreSQL variables are dynamic according to the system’s RAM, and we never re-ran them after migrating to larger Linodes last month
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I’m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I’m getting those autowire errors in Tomcat 8.5.30 again:
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@ -26,7 +26,7 @@ I created a GitHub issue to track this #389, because I’m super busy in Nai
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Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items
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I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now
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@ -36,7 +36,7 @@ Send a note about my dspace-statistics-api to the dspace-tech mailing list
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Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage
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Today these are the top 10 IPs:
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<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ Then I ran all system updates and restarted the server
|
||||
|
||||
I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another Ghostscript vulnerability last week
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -50,7 +50,7 @@ I don’t see anything interesting in the web server logs around that time t
|
||||
357 207.46.13.1
|
||||
903 54.70.40.11
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -72,7 +72,7 @@ real 0m19.873s
|
||||
user 0m22.203s
|
||||
sys 0m1.979s
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -46,7 +46,7 @@ Most worryingly, there are encoding errors in the abstracts for eleven items, fo
|
||||
|
||||
I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -64,7 +64,7 @@ $ ./fix-metadata-values.py -i /tmp/2019-02-21-fix-4-regions.csv -db dspace -u ds
|
||||
$ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-2-countries.csv -db dspace -u dspace -p 'fuuu' -m 228 -f cg.coverage.country -d
|
||||
$ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace -u dspace -p 'fuuu' -m 231 -f cg.coverage.region -d
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -48,7 +48,7 @@ DELETE 1
|
||||
|
||||
But after this I tried to delete the item from the XMLUI and it is still present…
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -34,7 +34,7 @@ Run system updates on CGSpace (linode18) and reboot it
|
||||
|
||||
Skype with Marie-Angélique and Abenet about CG Core v2
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -38,7 +38,7 @@ CGSpace
|
||||
|
||||
Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -46,7 +46,7 @@ After rebooting, all statistics cores were loaded… wow, that’s luck
|
||||
|
||||
Run system updates on DSpace Test (linode19) and reboot it
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -72,7 +72,7 @@ Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
|
||||
7249 2a01:7e00::f03c:91ff:fe18:7396
|
||||
9124 45.5.186.2
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -18,7 +18,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="October, 2019"/>
|
||||
<meta name="twitter:description" content="2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script’s “unneccesary Unicode” fix: $ csvcut -c 'id,dc."/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -58,7 +58,7 @@ Let’s see how many of the REST API requests were for bitstreams (because t
|
||||
# zcat --force /var/log/nginx/rest.log.*.gz | grep -E "[0-9]{1,2}/Oct/2019" | grep -c -E "/rest/bitstreams"
|
||||
106781
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -46,7 +46,7 @@ Make sure all packages are up to date and the package manager is up to date, the
|
||||
# dpkg -C
|
||||
# reboot
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -56,7 +56,7 @@ I tweeted the CGSpace repository link
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -38,7 +38,7 @@ The code finally builds and runs with a fresh install
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -42,7 +42,7 @@ You need to download this into the DSpace 6.x source and compile it
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -48,7 +48,7 @@ The third item now has a donut with score 1 since I tweeted it last week
|
||||
|
||||
On the same note, the one item Abenet pointed out last week now has a donut with score of 104 after I tweeted it last week
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -34,7 +34,7 @@ I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ I sent Atmire the dspace.log from today and told them to log into the server to
|
||||
In other news, I checked the statistics API on DSpace 6 and it’s working
|
||||
I tried to build the OAI registry on the freshly migrated DSpace 6 on DSpace Test and I get an error:
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -38,7 +38,7 @@ I restarted Tomcat and PostgreSQL and the issue was gone
|
||||
|
||||
Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the 5_x-prod branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter’s request
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ It is class based so I can easily add support for other vocabularies, and the te
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -48,7 +48,7 @@ I filed a bug on OpenRXV: https://github.com/ilri/OpenRXV/issues/39
|
||||
|
||||
I filed an issue on OpenRXV to make some minor edits to the admin UI: https://github.com/ilri/OpenRXV/issues/40
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -44,7 +44,7 @@ During the FlywayDB migration I got an error:
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -32,7 +32,7 @@ So far we’ve spent at least fifty hours to process the statistics and stat
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ I started processing those (about 411,000 records):
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -50,7 +50,7 @@ For example, this item has 51 views on CGSpace, but 0 on AReS
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -60,7 +60,7 @@ $ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty
|
||||
}
|
||||
}
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -34,7 +34,7 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -44,7 +44,7 @@ Perhaps one of the containers crashed, I should have looked closer but I was in
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ I looked at the top user agents and IPs in the Solr statistics for last month an
|
||||
|
||||
I will add the RI/1.0 pattern to our DSpace agents overload and purge them from Solr (we had previously seen this agent with 9,000 hits or so in 2020-09), but I think I will leave the Microsoft Word one… as that’s an actual user…
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ I simply started it and AReS was running again:
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -30,7 +30,7 @@ Export another list of ALL subjects on CGSpace, including AGROVOC and non-AGROVO
|
||||
localhost/dspace63= > \COPY (SELECT DISTINCT LOWER(text_value) AS subject, count(*) FROM metadatavalue WHERE dspace_object_id in (SELECT dspace_object_id FROM item) AND metadata_field_id IN (119, 120, 127, 122, 128, 125, 135, 203, 208, 210, 215, 123, 236, 242, 187) GROUP BY subject ORDER BY count DESC) to /tmp/2021-07-01-all-subjects.csv WITH CSV HEADER;
|
||||
COPY 20994
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -18,7 +18,7 @@ I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
|
||||
<meta property="og:type" content="article" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-08/" />
|
||||
<meta property="article:published_time" content="2021-08-01T09:01:07+03:00" />
|
||||
<meta property="article:modified_time" content="2021-08-01T16:19:05+03:00" />
|
||||
<meta property="article:modified_time" content="2021-08-02T16:00:42+03:00" />
|
||||
|
||||
|
||||
|
||||
@ -32,7 +32,7 @@ Update Docker images on AReS server (linode20) and reboot the server:
|
||||
|
||||
I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
@ -42,9 +42,9 @@ I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
|
||||
"@type": "BlogPosting",
|
||||
"headline": "August, 2021",
|
||||
"url": "https://alanorth.github.io/cgspace-notes/2021-08/",
|
||||
"wordCount": "300",
|
||||
"wordCount": "535",
|
||||
"datePublished": "2021-08-01T09:01:07+03:00",
|
||||
"dateModified": "2021-08-01T16:19:05+03:00",
|
||||
"dateModified": "2021-08-02T16:00:42+03:00",
|
||||
"author": {
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
@ -168,7 +168,43 @@ I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<!-- raw HTML omitted -->
|
||||
<h2 id="2021-08-03">2021-08-03</h2>
|
||||
<ul>
|
||||
<li>Run fresh re-harvest on AReS</li>
|
||||
</ul>
|
||||
<h2 id="2021-08-05">2021-08-05</h2>
|
||||
<ul>
|
||||
<li>Have a quick call with Mishell Portilla from CIP about a journal article that was flagged as being in a predatory journal (Beall’s List)
|
||||
<ul>
|
||||
<li>We agreed to unmap it from RTB’s collection for now, and I asked for advice from Peter and Abenet for what to do in the future</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>A developer from the Alliance asked for access to the CGSpace database so they can make some integration with PowerBI
|
||||
<ul>
|
||||
<li>I told them we don’t allow direct database access, and that it would be tricky anyways (that’s what APIs are for!)</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>I’m curious if there are still any requests coming in to CGSpace from the abusive Russian networks
|
||||
<ul>
|
||||
<li>I extracted all the unique IPs that nginx processed in the last week:</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console"># zcat --force /var/log/nginx/access.log /var/log/nginx/access.log.1 /var/log/nginx/access.log.2 /var/log/nginx/access.log.3 /var/log/nginx/access.log.4 /var/log/nginx/access.log.5 /var/log/nginx/access.log.6 /var/log/nginx/access.log.7 /var/log/nginx/access.log.8 | grep -E " (200|499) " | grep -v -E "(mahider|Googlebot|Turnitin|Grammarly|Unpaywall|UptimeRobot|bot)" | awk '{print $1}' | sort | uniq > /tmp/2021-08-05-all-ips.txt
|
||||
# wc -l /tmp/2021-08-05-all-ips.txt
|
||||
43428 /tmp/2021-08-05-all-ips.txt
|
||||
</code></pre><ul>
|
||||
<li>Already I can see that the total is much less than during the attack on one weekend last month (over 50,000!)
|
||||
<ul>
|
||||
<li>Indeed, now I see that there are no IPs from those networks coming in now:</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console">$ ./ilri/resolve-addresses-geoip2.py -i /tmp/2021-08-05-all-ips.txt -o /tmp/2021-08-05-all-ips.csv
|
||||
$ csvgrep -c asn -r '^(49453|46844|206485|62282|36352|35913|35624|8100)$' /tmp/2021-08-05-all-ips.csv | csvcut -c ip | sed 1d | sort | uniq > /tmp/2021-08-05-all-ips-to-purge.csv
|
||||
$ wc -l /tmp/2021-08-05-all-ips-to-purge.csv
|
||||
0 /tmp/2021-08-05-all-ips-to-purge.csv
|
||||
</code></pre><!-- raw HTML omitted -->
|
||||
|
||||
|
||||
|
||||
|
@ -17,7 +17,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="404 Page not found"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -10,14 +10,14 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||
<meta property="og:updated_time" content="2021-08-01T16:19:05+03:00" />
|
||||
<meta property="og:updated_time" content="2021-08-02T16:00:42+03:00" />
|
||||
|
||||
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Categories"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -10,14 +10,14 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||
<meta property="og:updated_time" content="2021-08-01T16:19:05+03:00" />
|
||||
<meta property="og:updated_time" content="2021-08-02T16:00:42+03:00" />
|
||||
|
||||
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
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|
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||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -3,19 +3,19 @@
|
||||
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2021-08/</loc>
|
||||
<lastmod>2021-08-01T16:19:05+03:00</lastmod>
|
||||
<lastmod>2021-08-02T16:00:42+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
|
||||
<lastmod>2021-08-01T16:19:05+03:00</lastmod>
|
||||
<lastmod>2021-08-02T16:00:42+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||
<lastmod>2021-08-01T16:19:05+03:00</lastmod>
|
||||
<lastmod>2021-08-02T16:00:42+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
|
||||
<lastmod>2021-08-01T16:19:05+03:00</lastmod>
|
||||
<lastmod>2021-08-02T16:00:42+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||
<lastmod>2021-08-01T16:19:05+03:00</lastmod>
|
||||
<lastmod>2021-08-02T16:00:42+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2021-07/</loc>
|
||||
<lastmod>2021-08-01T16:19:05+03:00</lastmod>
|
||||
|
@ -17,7 +17,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Tags"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
@ -17,7 +17,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Migration"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.86.1" />
|
||||
<meta name="generator" content="Hugo 0.87.0" />
|
||||
|
||||
|
||||
|
||||
|
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Reference in New Issue
Block a user