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Add notes for 2021-11-22
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@ -182,5 +182,25 @@ $ docker-compose up -d
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- Run all system updates and reboot the server
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- Start a full harvest, but I notice that the number of items being harvested is not complete, so I stopped it
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- Run all system updates on CGSpace (linode18) and DSpace Test (linode26) and reboot them
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- ICT finally got back to use about the passwords for SMTP so I updated that and tested it to make sure it's working
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- Some bot with IP 87.203.87.141 in Greece is making tons of requests to XMLUI with the user agent `Microsoft Internet Explorer`
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- I added them to the list of IPs in nginx that get an HTTP 403 with a message to use a real user agent
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- I will also purge all their requests from Solr:
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```console
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$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips -p
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Purging 10893 hits from 87.203.87.141 in statistics
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Total number of bot hits purged: 10893
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```
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- I did a bit more work documenting and tweaking the PostgreSQL configuration for CGSpace and DSpace Test in the Ansible infrastructure playbooks
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- I finally deployed the changes on both servers
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## 2021-11-22
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- Udana asked me about validating on OpenArchives again
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- According to my notes we actually completed this in 2021-08, but for some reason we are no longer on the list and I can't validate again
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- There seems to be a problem with their website because every link I try to validate says it received an HTTP 500 response from CGSpace
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<!-- vim: set sw=2 ts=2: -->
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@ -34,7 +34,7 @@ Last week I had increased the limit from 30 to 60, which seemed to help, but now
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$ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace
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78
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"/>
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@ -36,7 +36,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
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-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
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-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -28,7 +28,7 @@ Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_
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I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.
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Update GitHub wiki for documentation of maintenance tasks.
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -38,7 +38,7 @@ I noticed we have a very interesting list of countries on CGSpace:
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Not only are there 49,000 countries, we have some blanks (25)…
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Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE”
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -28,7 +28,7 @@ Looking at issues with author authorities on CGSpace
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For some reason we still have the index-lucene-update cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module
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Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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@ -32,7 +32,7 @@ After running DSpace for over five years I’ve never needed to look in any
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This will save us a few gigs of backup space we’re paying for on S3
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Also, I noticed the checker log has some errors we should pay attention to:
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -34,7 +34,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
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# awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
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3168
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -34,7 +34,7 @@ This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRec
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You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets
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Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship
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"/>
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@ -44,7 +44,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
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In this case the select query was showing 95 results before the update
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -42,7 +42,7 @@ $ git checkout -b 55new 5_x-prod
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$ git reset --hard ilri/5_x-prod
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$ git rebase -i dspace-5.5
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -34,7 +34,7 @@ It looks like we might be able to use OUs now, instead of DCs:
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$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)"
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -42,7 +42,7 @@ I exported a random item’s metadata as CSV, deleted all columns except id
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0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -26,7 +26,7 @@ Add dc.type to the output options for Atmire’s Listings and Reports module
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Add dc.type to the output options for Atmire’s Listings and Reports module (#286)
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -46,7 +46,7 @@ I see thousands of them in the logs for the last few months, so it’s not r
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I’ve raised a ticket with Atmire to ask
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Another worrying error from dspace.log is:
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -28,7 +28,7 @@ I checked to see if the Solr sharding task that is supposed to run on January 1s
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I tested on DSpace Test as well and it doesn’t work there either
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I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -50,7 +50,7 @@ DELETE 1
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Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
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Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -54,7 +54,7 @@ Interestingly, it seems DSpace 4.x’s thumbnails were sRGB, but forcing reg
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$ identify ~/Desktop/alc_contrastes_desafios.jpg
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/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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@ -40,7 +40,7 @@ Testing the CMYK patch on a collection with 650 items:
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$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -18,7 +18,7 @@
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="May, 2017"/>
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<meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it’s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire’s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
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@ -18,7 +18,7 @@
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<meta name="twitter:card" content="summary"/>
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<meta name="twitter:title" content="June, 2017"/>
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<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we’ll create a new sub-community for Phase II and create collections for the research themes there The current “Research Themes” community will be renamed to “WLE Phase I Research Themes” Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
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<meta name="generator" content="Hugo 0.89.3" />
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<meta name="generator" content="Hugo 0.89.4" />
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@ -36,7 +36,7 @@ Merge changes for WLE Phase II theme rename (#329)
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Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace
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We can use PostgreSQL’s extended output format (-x) plus sed to format the output into quasi XML:
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"/>
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<meta name="generator" content="Hugo 0.89.4" />
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@ -60,7 +60,7 @@ This was due to newline characters in the dc.description.abstract column, which
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I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d
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Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet
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"/>
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<meta name="generator" content="Hugo 0.89.4" />
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@ -32,7 +32,7 @@ Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two
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Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account is both in the approvers step as well as the group
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"/>
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@ -34,7 +34,7 @@ http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
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There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine
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Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections
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"/>
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@ -48,7 +48,7 @@ Generate list of authors on CGSpace for Peter to go through and correct:
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dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
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COPY 54701
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"/>
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@ -30,7 +30,7 @@ The logs say “Timeout waiting for idle object”
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PostgreSQL activity says there are 115 connections currently
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The list of connections to XMLUI and REST API for today:
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"/>
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<meta name="generator" content="Hugo 0.89.4" />
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@ -150,7 +150,7 @@ dspace.log.2018-01-02:34
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Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains
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"/>
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@ -30,7 +30,7 @@ We don’t need to distinguish between internal and external works, so that
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Yesterday I figured out how to monitor DSpace sessions using JMX
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I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu’s munin-plugins-java package and used the stuff I discovered about JMX in 2018-01
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"/>
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@ -24,7 +24,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
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Export a CSV of the IITA community metadata for Martin Mueller
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"/>
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<meta name="generator" content="Hugo 0.89.4" />
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@ -26,7 +26,7 @@ Catalina logs at least show some memory errors yesterday:
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I tried to test something on DSpace Test but noticed that it’s down since god knows when
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Catalina logs at least show some memory errors yesterday:
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"/>
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<meta name="generator" content="Hugo 0.89.4" />
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@ -38,7 +38,7 @@ http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E
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Then I reduced the JVM heap size from 6144 back to 5120m
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Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the Ansible infrastructure scripts to support hosts choosing which distribution they want to use
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"/>
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<meta name="generator" content="Hugo 0.89.4" />
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@ -58,7 +58,7 @@ real 74m42.646s
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user 8m5.056s
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sys 2m7.289s
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"/>
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@ -36,7 +36,7 @@ During the mvn package stage on the 5.8 branch I kept getting issues with java r
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There is insufficient memory for the Java Runtime Environment to continue.
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"/>
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@ -46,7 +46,7 @@ Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did
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The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes
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I ran all system updates on DSpace Test and rebooted it
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"/>
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@ -30,7 +30,7 @@ I’ll update the DSpace role in our Ansible infrastructure playbooks and ru
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Also, I’ll re-run the postgresql tasks because the custom PostgreSQL variables are dynamic according to the system’s RAM, and we never re-ran them after migrating to larger Linodes last month
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I’m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I’m getting those autowire errors in Tomcat 8.5.30 again:
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"/>
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@ -26,7 +26,7 @@ I created a GitHub issue to track this #389, because I’m super busy in Nai
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Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items
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I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now
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"/>
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Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage
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Today these are the top 10 IPs:
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"/>
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I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another Ghostscript vulnerability last week
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"/>
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357 207.46.13.1
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903 54.70.40.11
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"/>
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user 0m22.203s
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sys 0m1.979s
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"/>
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<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -46,7 +46,7 @@ Most worryingly, there are encoding errors in the abstracts for eleven items, fo
|
||||
|
||||
I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -64,7 +64,7 @@ $ ./fix-metadata-values.py -i /tmp/2019-02-21-fix-4-regions.csv -db dspace -u ds
|
||||
$ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-2-countries.csv -db dspace -u dspace -p 'fuuu' -m 228 -f cg.coverage.country -d
|
||||
$ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace -u dspace -p 'fuuu' -m 231 -f cg.coverage.region -d
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -48,7 +48,7 @@ DELETE 1
|
||||
|
||||
But after this I tried to delete the item from the XMLUI and it is still present…
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -34,7 +34,7 @@ Run system updates on CGSpace (linode18) and reboot it
|
||||
|
||||
Skype with Marie-Angélique and Abenet about CG Core v2
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -38,7 +38,7 @@ CGSpace
|
||||
|
||||
Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -46,7 +46,7 @@ After rebooting, all statistics cores were loaded… wow, that’s luck
|
||||
|
||||
Run system updates on DSpace Test (linode19) and reboot it
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -72,7 +72,7 @@ Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
|
||||
7249 2a01:7e00::f03c:91ff:fe18:7396
|
||||
9124 45.5.186.2
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -18,7 +18,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="October, 2019"/>
|
||||
<meta name="twitter:description" content="2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U+00A0) there that would otherwise be removed by the csv-metadata-quality script’s “unneccesary Unicode” fix: $ csvcut -c 'id,dc."/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -58,7 +58,7 @@ Let’s see how many of the REST API requests were for bitstreams (because t
|
||||
# zcat --force /var/log/nginx/rest.log.*.gz | grep -E "[0-9]{1,2}/Oct/2019" | grep -c -E "/rest/bitstreams"
|
||||
106781
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -46,7 +46,7 @@ Make sure all packages are up to date and the package manager is up to date, the
|
||||
# dpkg -C
|
||||
# reboot
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -56,7 +56,7 @@ I tweeted the CGSpace repository link
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -38,7 +38,7 @@ The code finally builds and runs with a fresh install
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -42,7 +42,7 @@ You need to download this into the DSpace 6.x source and compile it
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -48,7 +48,7 @@ The third item now has a donut with score 1 since I tweeted it last week
|
||||
|
||||
On the same note, the one item Abenet pointed out last week now has a donut with score of 104 after I tweeted it last week
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -34,7 +34,7 @@ I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ I sent Atmire the dspace.log from today and told them to log into the server to
|
||||
In other news, I checked the statistics API on DSpace 6 and it’s working
|
||||
I tried to build the OAI registry on the freshly migrated DSpace 6 on DSpace Test and I get an error:
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -38,7 +38,7 @@ I restarted Tomcat and PostgreSQL and the issue was gone
|
||||
|
||||
Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the 5_x-prod branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter’s request
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ It is class based so I can easily add support for other vocabularies, and the te
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -48,7 +48,7 @@ I filed a bug on OpenRXV: https://github.com/ilri/OpenRXV/issues/39
|
||||
|
||||
I filed an issue on OpenRXV to make some minor edits to the admin UI: https://github.com/ilri/OpenRXV/issues/40
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -44,7 +44,7 @@ During the FlywayDB migration I got an error:
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -32,7 +32,7 @@ So far we’ve spent at least fifty hours to process the statistics and stat
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ I started processing those (about 411,000 records):
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -50,7 +50,7 @@ For example, this item has 51 views on CGSpace, but 0 on AReS
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -60,7 +60,7 @@ $ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty
|
||||
}
|
||||
}
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -34,7 +34,7 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -44,7 +44,7 @@ Perhaps one of the containers crashed, I should have looked closer but I was in
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ I looked at the top user agents and IPs in the Solr statistics for last month an
|
||||
|
||||
I will add the RI/1.0 pattern to our DSpace agents overload and purge them from Solr (we had previously seen this agent with 9,000 hits or so in 2020-09), but I think I will leave the Microsoft Word one… as that’s an actual user…
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -36,7 +36,7 @@ I simply started it and AReS was running again:
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -30,7 +30,7 @@ Export another list of ALL subjects on CGSpace, including AGROVOC and non-AGROVO
|
||||
localhost/dspace63= > \COPY (SELECT DISTINCT LOWER(text_value) AS subject, count(*) FROM metadatavalue WHERE dspace_object_id in (SELECT dspace_object_id FROM item) AND metadata_field_id IN (119, 120, 127, 122, 128, 125, 135, 203, 208, 210, 215, 123, 236, 242, 187) GROUP BY subject ORDER BY count DESC) to /tmp/2021-07-01-all-subjects.csv WITH CSV HEADER;
|
||||
COPY 20994
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -32,7 +32,7 @@ Update Docker images on AReS server (linode20) and reboot the server:
|
||||
|
||||
I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -48,7 +48,7 @@ The syntax Moayad showed me last month doesn’t seem to honor the search qu
|
||||
|
||||
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -46,7 +46,7 @@ $ wc -l /tmp/2021-10-01-affiliations.txt
|
||||
|
||||
So we have 1879/7100 (26.46%) matching already
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -18,7 +18,7 @@ $ zstd statistics-2019.json
|
||||
<meta property="og:type" content="article" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-11/" />
|
||||
<meta property="article:published_time" content="2021-11-02T22:27:07+02:00" />
|
||||
<meta property="article:modified_time" content="2021-11-09T06:29:52+02:00" />
|
||||
<meta property="article:modified_time" content="2021-11-21T13:45:30+02:00" />
|
||||
|
||||
|
||||
|
||||
@ -32,7 +32,7 @@ First I exported all the 2019 stats from CGSpace:
|
||||
$ ./run.sh -s http://localhost:8081/solr/statistics -f 'time:2019-*' -a export -o statistics-2019.json -k uid
|
||||
$ zstd statistics-2019.json
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
@ -42,9 +42,9 @@ $ zstd statistics-2019.json
|
||||
"@type": "BlogPosting",
|
||||
"headline": "November, 2021",
|
||||
"url": "https://alanorth.github.io/cgspace-notes/2021-11/",
|
||||
"wordCount": "1153",
|
||||
"wordCount": "1339",
|
||||
"datePublished": "2021-11-02T22:27:07+02:00",
|
||||
"dateModified": "2021-11-09T06:29:52+02:00",
|
||||
"dateModified": "2021-11-21T13:45:30+02:00",
|
||||
"author": {
|
||||
"@type": "Person",
|
||||
"name": "Alan Orth"
|
||||
@ -307,6 +307,33 @@ $ docker-compose up -d
|
||||
</ul>
|
||||
</li>
|
||||
<li>Run all system updates on CGSpace (linode18) and DSpace Test (linode26) and reboot them</li>
|
||||
<li>ICT finally got back to use about the passwords for SMTP so I updated that and tested it to make sure it’s working</li>
|
||||
<li>Some bot with IP 87.203.87.141 in Greece is making tons of requests to XMLUI with the user agent <code>Microsoft Internet Explorer</code>
|
||||
<ul>
|
||||
<li>I added them to the list of IPs in nginx that get an HTTP 403 with a message to use a real user agent</li>
|
||||
<li>I will also purge all their requests from Solr:</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips -p
|
||||
Purging 10893 hits from 87.203.87.141 in statistics
|
||||
<span style="color:#960050;background-color:#1e0010">
|
||||
</span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 10893
|
||||
</code></pre></div><ul>
|
||||
<li>I did a bit more work documenting and tweaking the PostgreSQL configuration for CGSpace and DSpace Test in the Ansible infrastructure playbooks
|
||||
<ul>
|
||||
<li>I finally deployed the changes on both servers</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<h2 id="2021-11-22">2021-11-22</h2>
|
||||
<ul>
|
||||
<li>Udana asked me about validating on OpenArchives again
|
||||
<ul>
|
||||
<li>According to my notes we actually completed this in 2021-08, but for some reason we are no longer on the list and I can’t validate again</li>
|
||||
<li>There seems to be a problem with their website because every link I try to validate says it received an HTTP 500 response from CGSpace</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<!-- raw HTML omitted -->
|
||||
|
||||
|
@ -17,7 +17,7 @@
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="404 Page not found"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -10,14 +10,14 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
|
||||
<meta property="og:updated_time" content="2021-11-09T06:29:52+02:00" />
|
||||
<meta property="og:updated_time" content="2021-11-21T13:45:30+02:00" />
|
||||
|
||||
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Categories"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -10,14 +10,14 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||
<meta property="og:updated_time" content="2021-11-09T06:29:52+02:00" />
|
||||
<meta property="og:updated_time" content="2021-11-21T13:45:30+02:00" />
|
||||
|
||||
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
@ -10,14 +10,14 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
|
||||
<meta property="og:updated_time" content="2021-11-09T06:29:52+02:00" />
|
||||
<meta property="og:updated_time" content="2021-11-21T13:45:30+02:00" />
|
||||
|
||||
|
||||
|
||||
<meta name="twitter:card" content="summary"/>
|
||||
<meta name="twitter:title" content="Notes"/>
|
||||
<meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
|
||||
<meta name="generator" content="Hugo 0.89.3" />
|
||||
<meta name="generator" content="Hugo 0.89.4" />
|
||||
|
||||
|
||||
|
||||
|
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|
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