From 5545aa5ca6468e4208ab2fb2a293204c72cc011f Mon Sep 17 00:00:00 2001 From: Alan Orth Date: Mon, 9 Jan 2017 16:20:52 +0200 Subject: [PATCH] Regenerate public --- public/2015-11/index.html | 3 + public/2015-12/index.html | 13 +-- public/2016-01/index.html | 7 +- public/2016-02/index.html | 9 +- public/2016-03/index.html | 17 ++-- public/2016-04/index.html | 3 + public/2016-05/index.html | 5 +- public/2016-06/index.html | 5 +- public/2016-07/index.html | 5 +- public/2016-08/index.html | 7 +- public/2016-09/index.html | 17 ++-- public/2016-10/index.html | 11 ++- public/2016-11/index.html | 11 ++- public/2016-12/index.html | 15 ++-- public/2017-01/index.html | 14 ++- public/2017/01/mapping-crazy-duplicate.png | Bin 0 -> 5452 bytes public/css/style.css | 6 +- public/index.html | 3 + public/index.xml | 95 +++++++++++---------- public/page/2/index.html | 5 +- public/post/index.html | 3 + public/post/index.xml | 95 +++++++++++---------- public/post/page/2/index.html | 5 +- public/tags/notes/index.html | 3 + public/tags/notes/index.xml | 95 +++++++++++---------- public/tags/notes/page/2/index.html | 5 +- 26 files changed, 278 insertions(+), 179 deletions(-) create mode 100644 public/2017/01/mapping-crazy-duplicate.png diff --git a/public/2015-11/index.html b/public/2015-11/index.html index e63545e04..25df9ab9a 100644 --- a/public/2015-11/index.html +++ b/public/2015-11/index.html @@ -307,6 +307,7 @@ db.statementpool = true +

Recent Posts

@@ -326,6 +327,8 @@ db.statementpool = true
+ +

Links

    diff --git a/public/2015-12/index.html b/public/2015-12/index.html index a31d48977..3f339bef1 100644 --- a/public/2015-12/index.html +++ b/public/2015-12/index.html @@ -224,7 +224,7 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
  1. CCAFS noticed that one of their items displays only the Atmire statlets: https://cgspace.cgiar.org/handle/10568/42445
    2. -

    CCAFS item

    +

    CCAFS item

    • The authorizations for the item are all public READ, and I don’t see any errors in dspace.log when browsing that item
      • @@ -280,10 +280,10 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
    • The PostgreSQL stats from Munin all point to something database-related with the DSpace 5 upgrade around mid–late November
    -

    PostgreSQL bgwriter (year) -PostgreSQL cache (year) -PostgreSQL locks (year) -PostgreSQL scans (year)

    +

    PostgreSQL bgwriter (year) +PostgreSQL cache (year) +PostgreSQL locks (year) +PostgreSQL scans (year)

    2015-12-07

    @@ -325,6 +325,7 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle +

    Recent Posts

    @@ -344,6 +345,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
    + +

    Links

      diff --git a/public/2016-01/index.html b/public/2016-01/index.html index 5890c41a5..6832535a5 100644 --- a/public/2016-01/index.html +++ b/public/2016-01/index.html @@ -213,13 +213,13 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so
    1. This CCAFS item Before:
      2. -

      XMLUI subjects before

      +

      XMLUI subjects before

      • After:
      -

      XMLUI subjects after

      +

      XMLUI subjects after

      @@ -235,6 +235,7 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so +

      Recent Posts

      @@ -254,6 +255,8 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} \; | so
      + +

      Links

        diff --git a/public/2016-02/index.html b/public/2016-02/index.html index adc9342a2..805732298 100644 --- a/public/2016-02/index.html +++ b/public/2016-02/index.html @@ -163,7 +163,7 @@ Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE&r
      1. I noticed we have a very interesting list of countries on CGSpace:
        2. -

        CGSpace country list

        +

        CGSpace country list

        • Not only are there 49,000 countries, we have some blanks (25)…
          • @@ -274,8 +274,8 @@ $ /opt/brew/Cellar/tomcat/8.0.30/bin/catalina start
        • Whip up some quick CSS to make the button in the submission workflow use the XMLUI theme’s brand colors (#154)
        -

        ILRI submission buttons -Drylands submission buttons

        +

        ILRI submission buttons +Drylands submission buttons

        2016-02-09

        @@ -495,6 +495,7 @@ Bitstream: tést señora alimentación.pdf +

        Recent Posts

        @@ -514,6 +515,8 @@ Bitstream: tést señora alimentación.pdf
        + +

        Links

          diff --git a/public/2016-03/index.html b/public/2016-03/index.html index 9307aa5ad..77359d691 100644 --- a/public/2016-03/index.html +++ b/public/2016-03/index.html @@ -175,7 +175,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
        1. It is very messed up because some labels are incorrect, fields are missing, etc
          2. -

          Mixed up label in Atmire CUA

          +

          Mixed up label in Atmire CUA

          • Update documentation for Atmire modules
            • @@ -200,7 +200,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
          • Also four or so center-specific subject strings were missing for Discovery
          -

          Missing XMLUI string

          +

          Missing XMLUI string

          2016-03-15

          @@ -257,13 +257,13 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
        2. Some of their items end up with thumbnails that have a big white border around them:
          3. -

          Excessive whitespace in thumbnail

          +

          Excessive whitespace in thumbnail

          • Turns out we can add -trim to the GraphicsMagick options to trim the whitespace
          -

          Trimmed thumbnail

          +

          Trimmed thumbnail

          • Command used:
            • @@ -297,7 +297,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
          • On a related note, we have 51,000 items indexed from the sitemap, but 500,000 items in the Google index, so we DEFINITELY have a problem with duplicate content
          -

          CGSpace pages in Google index

          +

          CGSpace pages in Google index

          • Turns out this is a problem with DSpace’s robots.txt, and there’s a Jira ticket since December, 2015: https://jira.duraspace.org/browse/DS-2962
            • @@ -305,8 +305,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
          • For now I’ve just set a bunch of these dynamic pages to not appear in search results by using the URL Parameters tool in Webmaster Tools
          -

          URL parameters cause millions of dynamic pages -Setting pages with the filter_0 param not to show in search results

          +

          URL parameters cause millions of dynamic pages +Setting pages with the filter_0 param not to show in search results

          • Move AVCD collection to new community and update move_collection.sh script: https://gist.github.com/alanorth/392c4660e8b022d99dfa
            • @@ -388,6 +388,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja +

            Recent Posts

            @@ -407,6 +408,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
            + +

            Links

              diff --git a/public/2016-04/index.html b/public/2016-04/index.html index 29fdaf544..73c553893 100644 --- a/public/2016-04/index.html +++ b/public/2016-04/index.html @@ -607,6 +607,7 @@ dspace.log.2016-04-27:7271 +

              Recent Posts

              @@ -626,6 +627,8 @@ dspace.log.2016-04-27:7271
              + +

              Links

                diff --git a/public/2016-05/index.html b/public/2016-05/index.html index f9735e4e2..b7d2db3e0 100644 --- a/public/2016-05/index.html +++ b/public/2016-05/index.html @@ -180,7 +180,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
              1. Fix a reference to dc.type.output in Discovery that I had missed when we migrated to dc.type last month (#223)
          -

          Item type in Discovery results

          +

          Item type in Discovery results

          2016-05-06

          @@ -459,6 +459,7 @@ sys 0m20.540s +

          Recent Posts

          @@ -478,6 +479,8 @@ sys 0m20.540s
          + +

          Links

            diff --git a/public/2016-06/index.html b/public/2016-06/index.html index 201ffcad0..797d8d5bb 100644 --- a/public/2016-06/index.html +++ b/public/2016-06/index.html @@ -466,7 +466,7 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
          1. Now the sharing and Altmetric bits are more prominent:
            2. -

            DSpace 5.1 XMLUI With Altmetric Badge

            +

            DSpace 5.1 XMLUI With Altmetric Badge

            • Run all system updates on the servers and reboot
              • @@ -503,6 +503,7 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D +

              Recent Posts

              @@ -522,6 +523,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
              + +

              Links

                diff --git a/public/2016-07/index.html b/public/2016-07/index.html index 93e496562..64325a639 100644 --- a/public/2016-07/index.html +++ b/public/2016-07/index.html @@ -390,7 +390,7 @@ index.authority.ignore-variants=true
              1. Integrate and massively clean up About page (#256)
            -

            About page

            +

            About page

            • The DSpace source code mentions the configuration key discovery.index.authority.ignore-prefered.* (with prefix of discovery, despite the docs saying otherwise), so I’m trying the following on DSpace Test:
              • @@ -429,6 +429,7 @@ discovery.index.authority.ignore-variants=true +

              Recent Posts

              @@ -448,6 +449,8 @@ discovery.index.authority.ignore-variants=true
              + +

              Links

                diff --git a/public/2016-08/index.html b/public/2016-08/index.html index 4cf43f31c..d12ae7a9d 100644 --- a/public/2016-08/index.html +++ b/public/2016-08/index.html @@ -279,7 +279,7 @@ $ ln -sv ~/dspace/webapps/solr /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/sol
              1. Finally got DSpace (5.5) running on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5 via the updated Ansible stuff
            -

            DSpace 5.5 on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5

            +

            DSpace 5.5 on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5

            2016-08-14

            @@ -293,7 +293,7 @@ $ ln -sv ~/dspace/webapps/solr /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/sol
          2. Notes on NodeJS + nginx + systemd: https://gist.github.com/alanorth/51acd476891c67dfe27725848cf5ace1
            3. -

            ExpressJS running behind nginx

            +

            ExpressJS running behind nginx

            2016-08-16

            @@ -499,6 +499,7 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b +

            Recent Posts

            @@ -518,6 +519,8 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
            + +

            Links

              diff --git a/public/2016-09/index.html b/public/2016-09/index.html index 14ac21ffd..6914e731e 100644 --- a/public/2016-09/index.html +++ b/public/2016-09/index.html @@ -172,7 +172,7 @@ distinguishedName: CN=Last\, First (ILRI),OU=ILRI Ethiopia Employees,OU=ILRI Eth
            1. Changing the DSpace LDAP config to use OU=ILRIHUB seems to work:
              2. -

              DSpace groups based on LDAP DN

              +

              DSpace groups based on LDAP DN

              • Notes for local PostgreSQL database recreation from production snapshot:
                • @@ -519,9 +519,9 @@ java.util.Map does not have a no-arg default constructor.
              • Perhaps these particular issues are memory issues, the munin graphs definitely show some weird purging/allocating behavior starting this week
              -

              Tomcat JVM usage day -Tomcat JVM usage week -Tomcat JVM usage month

              +

              Tomcat JVM usage day +Tomcat JVM usage week +Tomcat JVM usage month

              • And really, we did reduce the memory of CGSpace in late 2015, so maybe we should just increase it again, now that our usage is higher and we are having memory errors in the logs
                • @@ -543,7 +543,7 @@ java.util.Map does not have a no-arg default constructor.
              • Looking at Google Webmaster Tools again, it seems the work I did on URL query parameters and blocking via the X-Robots-Tag HTTP header in March, 2016 seem to have had a positive effect on Google’s index for CGSpace
              -

              Google Webmaster Tools for CGSpace

              +

              Google Webmaster Tools for CGSpace

              2016-09-16

              @@ -631,8 +631,8 @@ $ ./delete-metadata-values.py -f cg.contributor.affiliation -i affiliations_pb-2
            2. It actually works really well, and search results return much less hits now (before, after):
              3. -

              CGSpace search with "OR" boolean logic -DSpace Test search with "AND" boolean logic

              +

              CGSpace search with "OR" boolean logic +DSpace Test search with "AND" boolean logic

              • Found a way to improve the configuration of Atmire’s Content and Usage Analysis (CUA) module for date fields
                • @@ -795,6 +795,7 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri - +

                Recent Posts

                @@ -814,6 +815,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
                + +

                Links

                  diff --git a/public/2016-10/index.html b/public/2016-10/index.html index 89f058eab..6d3080c22 100644 --- a/public/2016-10/index.html +++ b/public/2016-10/index.html @@ -134,7 +134,7 @@
                1. I added the disclaimer text to the About page, then added a footer link to the disclaimer’s ID, but there is a Bootstrap issue that causes the page content to disappear when using in-page anchors: https://github.com/twbs/bootstrap/issues/1768
              -

              Bootstrap issue with in-page anchors

              +

              Bootstrap issue with in-page anchors

              • Looks like we’ll just have to add the text to the About page (without a link) or add a separate page
                • @@ -182,7 +182,7 @@ $ ./delete-metadata-values.py -i authors-delete-3.csv -f dc.contributor.author -
              • Magdalena from CCAFS asked why the colors in the thumbnails for these two items look different, even though they are the same in the PDF itself
              -

              CMYK vs sRGB colors

              +

              CMYK vs sRGB colors

              • Turns out the first PDF was exported from InDesign using CMYK and the second one was using sRGB
                • @@ -364,8 +364,8 @@ UPDATE 0
              • Looks much better now:
              -

              CGSpace with old icons -DSpace Test with Font Awesome icons

              +

              CGSpace with old icons +DSpace Test with Font Awesome icons

              • Run the same replacements on CGSpace
                • @@ -438,6 +438,7 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http: +

                Recent Posts

                @@ -457,6 +458,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
                + +

                Links

                  diff --git a/public/2016-11/index.html b/public/2016-11/index.html index 708228ed4..bf91b8e84 100644 --- a/public/2016-11/index.html +++ b/public/2016-11/index.html @@ -118,7 +118,7 @@
                1. Add dc.type to the output options for Atmire’s Listings and Reports module (#286)
              -

              Listings and Reports with output type

              +

              Listings and Reports with output type

              2016-11-02

              @@ -204,7 +204,7 @@ COPY 22
            3. Atmire’s Listings and Reports module seems to be broken on DSpace 5.5
              4. -

              Listings and Reports broken in DSpace 5.5

              +

              Listings and Reports broken in DSpace 5.5

              • I’ve filed a ticket with Atmire
                • @@ -402,8 +402,8 @@ X-Cocoon-Version: 2.2.0
              • The Tomcat JVM heap looks really good after applying the Crawler Session Manager fix on DSpace Test last night:
              -

              Tomcat JVM heap (day) after setting up the Crawler Session Manager -Tomcat JVM heap (week) after setting up the Crawler Session Manager

              +

              Tomcat JVM heap (day) after setting up the Crawler Session Manager +Tomcat JVM heap (week) after setting up the Crawler Session Manager

              • Seems the default regex doesn’t catch Baidu, though:
                • @@ -670,6 +670,7 @@ org.dspace.discovery.SearchServiceException: Error executing query +

                Recent Posts

                @@ -689,6 +690,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
                + +

                Links

                  diff --git a/public/2016-12/index.html b/public/2016-12/index.html index 5b4ca8748..615aa43a5 100644 --- a/public/2016-12/index.html +++ b/public/2016-12/index.html @@ -584,8 +584,8 @@ dspace=# update metadatavalue set authority='2df8136e-d8f4-4142-b58c-562337cab76
                1. After enabling a sizable shared_buffers for CGSpace’s PostgreSQL configuration the number of connections to the database dropped significantly
              -

              postgres_bgwriter-week -postgres_connections_ALL-week

              +

              postgres_bgwriter-week +postgres_connections_ALL-week

              • Looking at CIAT records from last week again, they have a lot of double authors like:
                • @@ -630,8 +630,8 @@ UPDATE 35
              • Checking in on CGSpace postgres stats again, looks like the shared_buffers change from a few days ago really made a big impact:
              -

              postgres_bgwriter-week -postgres_connections_ALL-week

              +

              postgres_bgwriter-week +postgres_connections_ALL-week

              • Looking at logs, it seems we need to evaluate which logs we keep and for how long
                • @@ -748,8 +748,8 @@ Caused by: java.lang.NoSuchMethodError: com.atmire.statistics.generator.DSpaceOb
              • Run a batch edit to add “RANGELANDS” ILRI subject to all items containing the word “RANGELANDS” in their metadata for Peter Ballantyne
              -

              Select all items with "rangelands" in metadata -Add RANGELANDS ILRI subject

              +

              Select all items with "rangelands" in metadata +Add RANGELANDS ILRI subject

              2016-12-18

              @@ -882,6 +882,7 @@ $ exit +

              Recent Posts

              @@ -901,6 +902,8 @@ $ exit
              + +

              Links

                diff --git a/public/2017-01/index.html b/public/2017-01/index.html index 606016a1d..ee4b793ab 100644 --- a/public/2017-01/index.html +++ b/public/2017-01/index.html @@ -30,7 +30,7 @@ - + @@ -208,6 +208,15 @@ Caused by: java.net.SocketException: Broken pipe (Write failed)
              1. Put Sisay’s item-view.xsl code to show mapped collections on CGSpace (#295)
                2. +

                2017-01-09

                + +
                  +
                • A user wrote to tell me that the new display of an item’s mappings had a crazy bug for at least one item: https://cgspace.cgiar.org/handle/10568/78596
                  • +
                • She said she only mapped it once, but it appears to be mapped 184 times
                  • +
                + +

                Crazy item mapping

                + @@ -223,6 +232,7 @@ Caused by: java.net.SocketException: Broken pipe (Write failed) +

                Recent Posts

                @@ -242,6 +252,8 @@ Caused by: java.net.SocketException: Broken pipe (Write failed)
                + +

                Links

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print{.visible-print-inline-block{display:inline-block!important}}@media print{.hidden-print{display:none!important}} \ No newline at end of file diff --git a/public/index.html b/public/index.html index e240c568d..eb068c753 100644 --- a/public/index.html +++ b/public/index.html @@ -347,6 +347,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and +

                  Recent Posts

                  @@ -366,6 +367,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
                  + +

                  Links

                    diff --git a/public/index.xml b/public/index.xml index 66b45794f..0c1e92928 100644 --- a/public/index.xml +++ b/public/index.xml @@ -112,6 +112,15 @@ Caused by: java.net.SocketException: Broken pipe (Write failed) <ul> <li>Put Sisay&rsquo;s <code>item-view.xsl</code> code to show mapped collections on CGSpace (<a href="https://github.com/ilri/DSpace/pull/295">#295</a>)</li> </ul> + +<h2 id="2017-01-09">2017-01-09</h2> + +<ul> +<li>A user wrote to tell me that the new display of an item&rsquo;s mappings had a crazy bug for at least one item: <a href="https://cgspace.cgiar.org/handle/10568/78596">https://cgspace.cgiar.org/handle/10568/78596</a></li> +<li>She said she only mapped it once, but it appears to be mapped 184 times</li> +</ul> + +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2017/01/mapping-crazy-duplicate.png" alt="Crazy item mapping" /></p> @@ -595,8 +604,8 @@ dspace=# update metadatavalue set authority='2df8136e-d8f4-4142-b58c-562337c <li>After enabling a sizable <code>shared_buffers</code> for CGSpace&rsquo;s PostgreSQL configuration the number of connections to the database dropped significantly</li> </ul> -<p><img src="2016/12/postgres_bgwriter-week.png" alt="postgres_bgwriter-week" /> -<img src="2016/12/postgres_connections_ALL-week.png" alt="postgres_connections_ALL-week" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_bgwriter-week.png" alt="postgres_bgwriter-week" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_connections_ALL-week.png" alt="postgres_connections_ALL-week" /></p> <ul> <li>Looking at CIAT records from last week again, they have a lot of double authors like:</li> @@ -641,8 +650,8 @@ UPDATE 35 <li>Checking in on CGSpace postgres stats again, looks like the <code>shared_buffers</code> change from a few days ago really made a big impact:</li> </ul> -<p><img src="2016/12/postgres_bgwriter-week-2016-12-13.png" alt="postgres_bgwriter-week" /> -<img src="2016/12/postgres_connections_ALL-week-2016-12-13.png" alt="postgres_connections_ALL-week" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_bgwriter-week-2016-12-13.png" alt="postgres_bgwriter-week" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_connections_ALL-week-2016-12-13.png" alt="postgres_connections_ALL-week" /></p> <ul> <li>Looking at logs, it seems we need to evaluate which logs we keep and for how long</li> @@ -759,8 +768,8 @@ Caused by: java.lang.NoSuchMethodError: com.atmire.statistics.generator.DSpaceOb <li>Run a batch edit to add &ldquo;RANGELANDS&rdquo; ILRI subject to all items containing the word &ldquo;RANGELANDS&rdquo; in their metadata for Peter Ballantyne</li> </ul> -<p><img src="2016/12/batch-edit1.png" alt="Select all items with &quot;rangelands&quot; in metadata" /> -<img src="2016/12/batch-edit2.png" alt="Add RANGELANDS ILRI subject" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/batch-edit1.png" alt="Select all items with &quot;rangelands&quot; in metadata" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/batch-edit2.png" alt="Add RANGELANDS ILRI subject" /></p> <h2 id="2016-12-18">2016-12-18</h2> @@ -894,7 +903,7 @@ $ exit <li>Add <code>dc.type</code> to the output options for Atmire&rsquo;s Listings and Reports module (<a href="https://github.com/ilri/DSpace/pull/286">#286</a>)</li> </ul> -<p><img src="2016/11/listings-and-reports.png" alt="Listings and Reports with output type" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/listings-and-reports.png" alt="Listings and Reports with output type" /></p> <h2 id="2016-11-02">2016-11-02</h2> @@ -980,7 +989,7 @@ COPY 22 <li>Atmire&rsquo;s Listings and Reports module seems to be broken on DSpace 5.5</li> </ul> -<p><img src="2016/11/listings-and-reports-55.png" alt="Listings and Reports broken in DSpace 5.5" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/listings-and-reports-55.png" alt="Listings and Reports broken in DSpace 5.5" /></p> <ul> <li>I&rsquo;ve filed a ticket with Atmire</li> @@ -1178,8 +1187,8 @@ X-Cocoon-Version: 2.2.0 <li>The Tomcat JVM heap looks really good after applying the Crawler Session Manager fix on DSpace Test last night:</li> </ul> -<p><img src="2016/11/dspacetest-tomcat-jvm-day.png" alt="Tomcat JVM heap (day) after setting up the Crawler Session Manager" /> -<img src="2016/11/dspacetest-tomcat-jvm-week.png" alt="Tomcat JVM heap (week) after setting up the Crawler Session Manager" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/dspacetest-tomcat-jvm-day.png" alt="Tomcat JVM heap (day) after setting up the Crawler Session Manager" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/dspacetest-tomcat-jvm-week.png" alt="Tomcat JVM heap (week) after setting up the Crawler Session Manager" /></p> <ul> <li>Seems the default regex doesn&rsquo;t catch Baidu, though:</li> @@ -1463,7 +1472,7 @@ org.dspace.discovery.SearchServiceException: Error executing query <li>I added the <a href="https://github.com/ilri/DSpace/issues/234">disclaimer text</a> to the About page, then added a footer link to the disclaimer&rsquo;s ID, but there is a Bootstrap issue that causes the page content to disappear when using in-page anchors: <a href="https://github.com/twbs/bootstrap/issues/1768">https://github.com/twbs/bootstrap/issues/1768</a></li> </ul> -<p><img src="2016/10/bootstrap-issue.png" alt="Bootstrap issue with in-page anchors" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/bootstrap-issue.png" alt="Bootstrap issue with in-page anchors" /></p> <ul> <li>Looks like we&rsquo;ll just have to add the text to the About page (without a link) or add a separate page</li> @@ -1511,7 +1520,7 @@ $ ./delete-metadata-values.py -i authors-delete-3.csv -f dc.contributor.author - <li>Magdalena from CCAFS asked why the colors in the thumbnails for these <a href="https://cgspace.cgiar.org/handle/10568/71249">two</a> <a href="https://cgspace.cgiar.org/handle/10568/71259">items</a> look different, even though they are the same in the PDF itself</li> </ul> -<p><img src="2016/10/cmyk-vs-srgb.jpg" alt="CMYK vs sRGB colors" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/cmyk-vs-srgb.jpg" alt="CMYK vs sRGB colors" /></p> <ul> <li>Turns out the first PDF was exported from InDesign using CMYK and the second one was using sRGB</li> @@ -1693,8 +1702,8 @@ UPDATE 0 <li>Looks much better now:</li> </ul> -<p><img src="2016/10/cgspace-icons.png" alt="CGSpace with old icons" /> -<img src="2016/10/dspacetest-fontawesome-icons.png" alt="DSpace Test with Font Awesome icons" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/cgspace-icons.png" alt="CGSpace with old icons" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/dspacetest-fontawesome-icons.png" alt="DSpace Test with Font Awesome icons" /></p> <ul> <li>Run the same replacements on CGSpace</li> @@ -1786,7 +1795,7 @@ distinguishedName: CN=Last\, First (ILRI),OU=ILRI Ethiopia Employees,OU=ILRI Eth <li>Changing the DSpace LDAP config to use <code>OU=ILRIHUB</code> seems to work:</li> </ul> -<p><img src="2016/09/ilri-ldap-users.png" alt="DSpace groups based on LDAP DN" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/ilri-ldap-users.png" alt="DSpace groups based on LDAP DN" /></p> <ul> <li>Notes for local PostgreSQL database recreation from production snapshot:</li> @@ -2133,9 +2142,9 @@ java.util.Map does not have a no-arg default constructor. <li>Perhaps these particular issues <em>are</em> memory issues, the munin graphs definitely show some weird purging/allocating behavior starting this week</li> </ul> -<p><img src="2016/09/tomcat_jvm-day.png" alt="Tomcat JVM usage day" /> -<img src="2016/09/tomcat_jvm-week.png" alt="Tomcat JVM usage week" /> -<img src="2016/09/tomcat_jvm-month.png" alt="Tomcat JVM usage month" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/tomcat_jvm-day.png" alt="Tomcat JVM usage day" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/tomcat_jvm-week.png" alt="Tomcat JVM usage week" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/tomcat_jvm-month.png" alt="Tomcat JVM usage month" /></p> <ul> <li>And really, we did reduce the memory of CGSpace in late 2015, so maybe we should just increase it again, now that our usage is higher and we are having memory errors in the logs</li> @@ -2157,7 +2166,7 @@ java.util.Map does not have a no-arg default constructor. <li>Looking at Google Webmaster Tools again, it seems the work I did on URL query parameters and blocking via the <code>X-Robots-Tag</code> HTTP header in March, 2016 seem to have had a positive effect on Google&rsquo;s index for CGSpace</li> </ul> -<p><img src="2016/09/google-webmaster-tools-index.png" alt="Google Webmaster Tools for CGSpace" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/google-webmaster-tools-index.png" alt="Google Webmaster Tools for CGSpace" /></p> <h2 id="2016-09-16">2016-09-16</h2> @@ -2245,8 +2254,8 @@ $ ./delete-metadata-values.py -f cg.contributor.affiliation -i affiliations_pb-2 <li>It actually works really well, and search results return much less hits now (before, after):</li> </ul> -<p><img src="2016/09/cgspace-search.png" alt="CGSpace search with &quot;OR&quot; boolean logic" /> -<img src="2016/09/dspacetest-search.png" alt="DSpace Test search with &quot;AND&quot; boolean logic" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/cgspace-search.png" alt="CGSpace search with &quot;OR&quot; boolean logic" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/dspacetest-search.png" alt="DSpace Test search with &quot;AND&quot; boolean logic" /></p> <ul> <li>Found a way to improve the configuration of Atmire&rsquo;s Content and Usage Analysis (CUA) module for date fields</li> @@ -2523,7 +2532,7 @@ $ ln -sv ~/dspace/webapps/solr /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/sol <li>Finally got DSpace (5.5) running on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5 via the updated Ansible stuff</li> </ul> -<p><img src="2016/08/dspace55-ubuntu16.04.png" alt="DSpace 5.5 on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/08/dspace55-ubuntu16.04.png" alt="DSpace 5.5 on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5" /></p> <h2 id="2016-08-14">2016-08-14</h2> @@ -2537,7 +2546,7 @@ $ ln -sv ~/dspace/webapps/solr /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/sol <li>Notes on NodeJS + nginx + systemd: <a href="https://gist.github.com/alanorth/51acd476891c67dfe27725848cf5ace1">https://gist.github.com/alanorth/51acd476891c67dfe27725848cf5ace1</a></li> </ul> -<p><img src="2016/08/nodejs-nginx.png" alt="ExpressJS running behind nginx" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/08/nodejs-nginx.png" alt="ExpressJS running behind nginx" /></p> <h2 id="2016-08-16">2016-08-16</h2> @@ -2959,7 +2968,7 @@ index.authority.ignore-variants=true <li>Integrate and massively clean up About page (<a href="https://github.com/ilri/DSpace/pull/256">#256</a>)</li> </ul> -<p><img src="2016/07/cgspace-about-page.png" alt="About page" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/07/cgspace-about-page.png" alt="About page" /></p> <ul> <li>The DSpace source code mentions the configuration key <code>discovery.index.authority.ignore-prefered.*</code> (with prefix of discovery, despite the docs saying otherwise), so I&rsquo;m trying the following on DSpace Test:</li> @@ -3314,7 +3323,7 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D <li>Now the sharing and Altmetric bits are more prominent:</li> </ul> -<p><img src="2016/06/xmlui-altmetric-sharing.png" alt="DSpace 5.1 XMLUI With Altmetric Badge" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/06/xmlui-altmetric-sharing.png" alt="DSpace 5.1 XMLUI With Altmetric Badge" /></p> <ul> <li>Run all system updates on the servers and reboot</li> @@ -3378,7 +3387,7 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D <li>Fix a reference to <code>dc.type.output</code> in Discovery that I had missed when we migrated to <code>dc.type</code> last month (<a href="https://github.com/ilri/DSpace/pull/223">#223</a>)</li> </ul> -<p><img src="2016/05/discovery-types.png" alt="Item type in Discovery results" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/05/discovery-types.png" alt="Item type in Discovery results" /></p> <h2 id="2016-05-06">2016-05-06</h2> @@ -4151,7 +4160,7 @@ dspace.log.2016-04-27:7271 <li>It is very messed up because some labels are incorrect, fields are missing, etc</li> </ul> -<p><img src="2016/03/cua-label-mixup.png" alt="Mixed up label in Atmire CUA" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/cua-label-mixup.png" alt="Mixed up label in Atmire CUA" /></p> <ul> <li>Update documentation for Atmire modules</li> @@ -4176,7 +4185,7 @@ dspace.log.2016-04-27:7271 <li>Also four or so center-specific subject strings were missing for Discovery</li> </ul> -<p><img src="2016/03/missing-xmlui-string.png" alt="Missing XMLUI string" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/missing-xmlui-string.png" alt="Missing XMLUI string" /></p> <h2 id="2016-03-15">2016-03-15</h2> @@ -4233,13 +4242,13 @@ dspace.log.2016-04-27:7271 <li>Some of their items end up with thumbnails that have a big white border around them:</li> </ul> -<p><img src="2016/03/bioversity-thumbnail-bad.jpg" alt="Excessive whitespace in thumbnail" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/bioversity-thumbnail-bad.jpg" alt="Excessive whitespace in thumbnail" /></p> <ul> <li>Turns out we can add <code>-trim</code> to the GraphicsMagick options to trim the whitespace</li> </ul> -<p><img src="2016/03/bioversity-thumbnail-good.jpg" alt="Trimmed thumbnail" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/bioversity-thumbnail-good.jpg" alt="Trimmed thumbnail" /></p> <ul> <li>Command used:</li> @@ -4273,7 +4282,7 @@ dspace.log.2016-04-27:7271 <li>On a related note, we have 51,000 items indexed from the sitemap, but 500,000 items in the Google index, so we DEFINITELY have a problem with duplicate content</li> </ul> -<p><img src="2016/03/google-index.png" alt="CGSpace pages in Google index" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/google-index.png" alt="CGSpace pages in Google index" /></p> <ul> <li>Turns out this is a problem with DSpace&rsquo;s <code>robots.txt</code>, and there&rsquo;s a Jira ticket since December, 2015: <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li> @@ -4281,8 +4290,8 @@ dspace.log.2016-04-27:7271 <li>For now I&rsquo;ve just set a bunch of these dynamic pages to not appear in search results by using the URL Parameters tool in Webmaster Tools</li> </ul> -<p><img src="2016/03/url-parameters.png" alt="URL parameters cause millions of dynamic pages" /> -<img src="2016/03/url-parameters2.png" alt="Setting pages with the filter_0 param not to show in search results" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/url-parameters.png" alt="URL parameters cause millions of dynamic pages" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/url-parameters2.png" alt="Setting pages with the filter_0 param not to show in search results" /></p> <ul> <li>Move AVCD collection to new community and update <code>move_collection.sh</code> script: <a href="https://gist.github.com/alanorth/392c4660e8b022d99dfa">https://gist.github.com/alanorth/392c4660e8b022d99dfa</a></li> @@ -4365,7 +4374,7 @@ dspace.log.2016-04-27:7271 <li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li> </ul> -<p><img src="2016/02/cgspace-countries.png" alt="CGSpace country list" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p> <ul> <li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li> @@ -4476,8 +4485,8 @@ $ /opt/brew/Cellar/tomcat/8.0.30/bin/catalina start <li>Whip up some quick CSS to make the button in the submission workflow use the XMLUI theme&rsquo;s brand colors (<a href="https://github.com/ilri/DSpace/issues/154">#154</a>)</li> </ul> -<p><img src="2016/02/submit-button-ilri.png" alt="ILRI submission buttons" /> -<img src="2016/02/submit-button-drylands.png" alt="Drylands submission buttons" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/02/submit-button-ilri.png" alt="ILRI submission buttons" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/02/submit-button-drylands.png" alt="Drylands submission buttons" /></p> <h2 id="2016-02-09">2016-02-09</h2> @@ -4769,13 +4778,13 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} <li>This <a href="https://cgspace.cgiar.org/handle/10568/67062">CCAFS item</a> Before:</li> </ul> -<p><img src="2016/01/xmlui-subjects-before.png" alt="XMLUI subjects before" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/01/xmlui-subjects-before.png" alt="XMLUI subjects before" /></p> <ul> <li>After:</li> </ul> -<p><img src="2016/01/xmlui-subjects-after.png" alt="XMLUI subjects after" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/01/xmlui-subjects-after.png" alt="XMLUI subjects after" /></p> @@ -4859,7 +4868,7 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle <li>CCAFS noticed that one of their items displays only the Atmire statlets: <a href="https://cgspace.cgiar.org/handle/10568/42445">https://cgspace.cgiar.org/handle/10568/42445</a></li> </ul> -<p><img src="2015/12/ccafs-item-no-metadata.png" alt="CCAFS item" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/ccafs-item-no-metadata.png" alt="CCAFS item" /></p> <ul> <li>The authorizations for the item are all public READ, and I don&rsquo;t see any errors in dspace.log when browsing that item</li> @@ -4915,10 +4924,10 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle <li>The PostgreSQL stats from Munin all point to something database-related with the DSpace 5 upgrade around mid–late November</li> </ul> -<p><img src="2015/12/postgres_bgwriter-year.png" alt="PostgreSQL bgwriter (year)" /> -<img src="2015/12/postgres_cache_cgspace-year.png" alt="PostgreSQL cache (year)" /> -<img src="2015/12/postgres_locks_cgspace-year.png" alt="PostgreSQL locks (year)" /> -<img src="2015/12/postgres_scans_cgspace-year.png" alt="PostgreSQL scans (year)" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_bgwriter-year.png" alt="PostgreSQL bgwriter (year)" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_cache_cgspace-year.png" alt="PostgreSQL cache (year)" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_locks_cgspace-year.png" alt="PostgreSQL locks (year)" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_scans_cgspace-year.png" alt="PostgreSQL scans (year)" /></p> <h2 id="2015-12-07">2015-12-07</h2> diff --git a/public/page/2/index.html b/public/page/2/index.html index 40b4ca250..b95712197 100644 --- a/public/page/2/index.html +++ b/public/page/2/index.html @@ -130,7 +130,7 @@
                  1. I noticed we have a very interesting list of countries on CGSpace:
                    2. -

                    CGSpace country list

                    +

                    CGSpace country list

                    • Not only are there 49,000 countries, we have some blanks (25)…
                      • @@ -243,6 +243,7 @@ +

                      Recent Posts

                      @@ -262,6 +263,8 @@
                      + +

                      Links

                        diff --git a/public/post/index.html b/public/post/index.html index 2a2731d61..1d1e0f48f 100644 --- a/public/post/index.html +++ b/public/post/index.html @@ -347,6 +347,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and +

                        Recent Posts

                        @@ -366,6 +367,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
                        + +

                        Links

                          diff --git a/public/post/index.xml b/public/post/index.xml index 8f51bfab2..069d9eb6f 100644 --- a/public/post/index.xml +++ b/public/post/index.xml @@ -112,6 +112,15 @@ Caused by: java.net.SocketException: Broken pipe (Write failed) <ul> <li>Put Sisay&rsquo;s <code>item-view.xsl</code> code to show mapped collections on CGSpace (<a href="https://github.com/ilri/DSpace/pull/295">#295</a>)</li> </ul> + +<h2 id="2017-01-09">2017-01-09</h2> + +<ul> +<li>A user wrote to tell me that the new display of an item&rsquo;s mappings had a crazy bug for at least one item: <a href="https://cgspace.cgiar.org/handle/10568/78596">https://cgspace.cgiar.org/handle/10568/78596</a></li> +<li>She said she only mapped it once, but it appears to be mapped 184 times</li> +</ul> + +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2017/01/mapping-crazy-duplicate.png" alt="Crazy item mapping" /></p> @@ -595,8 +604,8 @@ dspace=# update metadatavalue set authority='2df8136e-d8f4-4142-b58c-562337c <li>After enabling a sizable <code>shared_buffers</code> for CGSpace&rsquo;s PostgreSQL configuration the number of connections to the database dropped significantly</li> </ul> -<p><img src="2016/12/postgres_bgwriter-week.png" alt="postgres_bgwriter-week" /> -<img src="2016/12/postgres_connections_ALL-week.png" alt="postgres_connections_ALL-week" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_bgwriter-week.png" alt="postgres_bgwriter-week" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_connections_ALL-week.png" alt="postgres_connections_ALL-week" /></p> <ul> <li>Looking at CIAT records from last week again, they have a lot of double authors like:</li> @@ -641,8 +650,8 @@ UPDATE 35 <li>Checking in on CGSpace postgres stats again, looks like the <code>shared_buffers</code> change from a few days ago really made a big impact:</li> </ul> -<p><img src="2016/12/postgres_bgwriter-week-2016-12-13.png" alt="postgres_bgwriter-week" /> -<img src="2016/12/postgres_connections_ALL-week-2016-12-13.png" alt="postgres_connections_ALL-week" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_bgwriter-week-2016-12-13.png" alt="postgres_bgwriter-week" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_connections_ALL-week-2016-12-13.png" alt="postgres_connections_ALL-week" /></p> <ul> <li>Looking at logs, it seems we need to evaluate which logs we keep and for how long</li> @@ -759,8 +768,8 @@ Caused by: java.lang.NoSuchMethodError: com.atmire.statistics.generator.DSpaceOb <li>Run a batch edit to add &ldquo;RANGELANDS&rdquo; ILRI subject to all items containing the word &ldquo;RANGELANDS&rdquo; in their metadata for Peter Ballantyne</li> </ul> -<p><img src="2016/12/batch-edit1.png" alt="Select all items with &quot;rangelands&quot; in metadata" /> -<img src="2016/12/batch-edit2.png" alt="Add RANGELANDS ILRI subject" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/batch-edit1.png" alt="Select all items with &quot;rangelands&quot; in metadata" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/batch-edit2.png" alt="Add RANGELANDS ILRI subject" /></p> <h2 id="2016-12-18">2016-12-18</h2> @@ -894,7 +903,7 @@ $ exit <li>Add <code>dc.type</code> to the output options for Atmire&rsquo;s Listings and Reports module (<a href="https://github.com/ilri/DSpace/pull/286">#286</a>)</li> </ul> -<p><img src="2016/11/listings-and-reports.png" alt="Listings and Reports with output type" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/listings-and-reports.png" alt="Listings and Reports with output type" /></p> <h2 id="2016-11-02">2016-11-02</h2> @@ -980,7 +989,7 @@ COPY 22 <li>Atmire&rsquo;s Listings and Reports module seems to be broken on DSpace 5.5</li> </ul> -<p><img src="2016/11/listings-and-reports-55.png" alt="Listings and Reports broken in DSpace 5.5" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/listings-and-reports-55.png" alt="Listings and Reports broken in DSpace 5.5" /></p> <ul> <li>I&rsquo;ve filed a ticket with Atmire</li> @@ -1178,8 +1187,8 @@ X-Cocoon-Version: 2.2.0 <li>The Tomcat JVM heap looks really good after applying the Crawler Session Manager fix on DSpace Test last night:</li> </ul> -<p><img src="2016/11/dspacetest-tomcat-jvm-day.png" alt="Tomcat JVM heap (day) after setting up the Crawler Session Manager" /> -<img src="2016/11/dspacetest-tomcat-jvm-week.png" alt="Tomcat JVM heap (week) after setting up the Crawler Session Manager" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/dspacetest-tomcat-jvm-day.png" alt="Tomcat JVM heap (day) after setting up the Crawler Session Manager" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/dspacetest-tomcat-jvm-week.png" alt="Tomcat JVM heap (week) after setting up the Crawler Session Manager" /></p> <ul> <li>Seems the default regex doesn&rsquo;t catch Baidu, though:</li> @@ -1463,7 +1472,7 @@ org.dspace.discovery.SearchServiceException: Error executing query <li>I added the <a href="https://github.com/ilri/DSpace/issues/234">disclaimer text</a> to the About page, then added a footer link to the disclaimer&rsquo;s ID, but there is a Bootstrap issue that causes the page content to disappear when using in-page anchors: <a href="https://github.com/twbs/bootstrap/issues/1768">https://github.com/twbs/bootstrap/issues/1768</a></li> </ul> -<p><img src="2016/10/bootstrap-issue.png" alt="Bootstrap issue with in-page anchors" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/bootstrap-issue.png" alt="Bootstrap issue with in-page anchors" /></p> <ul> <li>Looks like we&rsquo;ll just have to add the text to the About page (without a link) or add a separate page</li> @@ -1511,7 +1520,7 @@ $ ./delete-metadata-values.py -i authors-delete-3.csv -f dc.contributor.author - <li>Magdalena from CCAFS asked why the colors in the thumbnails for these <a href="https://cgspace.cgiar.org/handle/10568/71249">two</a> <a href="https://cgspace.cgiar.org/handle/10568/71259">items</a> look different, even though they are the same in the PDF itself</li> </ul> -<p><img src="2016/10/cmyk-vs-srgb.jpg" alt="CMYK vs sRGB colors" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/cmyk-vs-srgb.jpg" alt="CMYK vs sRGB colors" /></p> <ul> <li>Turns out the first PDF was exported from InDesign using CMYK and the second one was using sRGB</li> @@ -1693,8 +1702,8 @@ UPDATE 0 <li>Looks much better now:</li> </ul> -<p><img src="2016/10/cgspace-icons.png" alt="CGSpace with old icons" /> -<img src="2016/10/dspacetest-fontawesome-icons.png" alt="DSpace Test with Font Awesome icons" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/cgspace-icons.png" alt="CGSpace with old icons" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/dspacetest-fontawesome-icons.png" alt="DSpace Test with Font Awesome icons" /></p> <ul> <li>Run the same replacements on CGSpace</li> @@ -1786,7 +1795,7 @@ distinguishedName: CN=Last\, First (ILRI),OU=ILRI Ethiopia Employees,OU=ILRI Eth <li>Changing the DSpace LDAP config to use <code>OU=ILRIHUB</code> seems to work:</li> </ul> -<p><img src="2016/09/ilri-ldap-users.png" alt="DSpace groups based on LDAP DN" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/ilri-ldap-users.png" alt="DSpace groups based on LDAP DN" /></p> <ul> <li>Notes for local PostgreSQL database recreation from production snapshot:</li> @@ -2133,9 +2142,9 @@ java.util.Map does not have a no-arg default constructor. <li>Perhaps these particular issues <em>are</em> memory issues, the munin graphs definitely show some weird purging/allocating behavior starting this week</li> </ul> -<p><img src="2016/09/tomcat_jvm-day.png" alt="Tomcat JVM usage day" /> -<img src="2016/09/tomcat_jvm-week.png" alt="Tomcat JVM usage week" /> -<img src="2016/09/tomcat_jvm-month.png" alt="Tomcat JVM usage month" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/tomcat_jvm-day.png" alt="Tomcat JVM usage day" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/tomcat_jvm-week.png" alt="Tomcat JVM usage week" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/tomcat_jvm-month.png" alt="Tomcat JVM usage month" /></p> <ul> <li>And really, we did reduce the memory of CGSpace in late 2015, so maybe we should just increase it again, now that our usage is higher and we are having memory errors in the logs</li> @@ -2157,7 +2166,7 @@ java.util.Map does not have a no-arg default constructor. <li>Looking at Google Webmaster Tools again, it seems the work I did on URL query parameters and blocking via the <code>X-Robots-Tag</code> HTTP header in March, 2016 seem to have had a positive effect on Google&rsquo;s index for CGSpace</li> </ul> -<p><img src="2016/09/google-webmaster-tools-index.png" alt="Google Webmaster Tools for CGSpace" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/google-webmaster-tools-index.png" alt="Google Webmaster Tools for CGSpace" /></p> <h2 id="2016-09-16">2016-09-16</h2> @@ -2245,8 +2254,8 @@ $ ./delete-metadata-values.py -f cg.contributor.affiliation -i affiliations_pb-2 <li>It actually works really well, and search results return much less hits now (before, after):</li> </ul> -<p><img src="2016/09/cgspace-search.png" alt="CGSpace search with &quot;OR&quot; boolean logic" /> -<img src="2016/09/dspacetest-search.png" alt="DSpace Test search with &quot;AND&quot; boolean logic" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/cgspace-search.png" alt="CGSpace search with &quot;OR&quot; boolean logic" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/dspacetest-search.png" alt="DSpace Test search with &quot;AND&quot; boolean logic" /></p> <ul> <li>Found a way to improve the configuration of Atmire&rsquo;s Content and Usage Analysis (CUA) module for date fields</li> @@ -2523,7 +2532,7 @@ $ ln -sv ~/dspace/webapps/solr /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/sol <li>Finally got DSpace (5.5) running on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5 via the updated Ansible stuff</li> </ul> -<p><img src="2016/08/dspace55-ubuntu16.04.png" alt="DSpace 5.5 on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/08/dspace55-ubuntu16.04.png" alt="DSpace 5.5 on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5" /></p> <h2 id="2016-08-14">2016-08-14</h2> @@ -2537,7 +2546,7 @@ $ ln -sv ~/dspace/webapps/solr /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/sol <li>Notes on NodeJS + nginx + systemd: <a href="https://gist.github.com/alanorth/51acd476891c67dfe27725848cf5ace1">https://gist.github.com/alanorth/51acd476891c67dfe27725848cf5ace1</a></li> </ul> -<p><img src="2016/08/nodejs-nginx.png" alt="ExpressJS running behind nginx" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/08/nodejs-nginx.png" alt="ExpressJS running behind nginx" /></p> <h2 id="2016-08-16">2016-08-16</h2> @@ -2959,7 +2968,7 @@ index.authority.ignore-variants=true <li>Integrate and massively clean up About page (<a href="https://github.com/ilri/DSpace/pull/256">#256</a>)</li> </ul> -<p><img src="2016/07/cgspace-about-page.png" alt="About page" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/07/cgspace-about-page.png" alt="About page" /></p> <ul> <li>The DSpace source code mentions the configuration key <code>discovery.index.authority.ignore-prefered.*</code> (with prefix of discovery, despite the docs saying otherwise), so I&rsquo;m trying the following on DSpace Test:</li> @@ -3314,7 +3323,7 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D <li>Now the sharing and Altmetric bits are more prominent:</li> </ul> -<p><img src="2016/06/xmlui-altmetric-sharing.png" alt="DSpace 5.1 XMLUI With Altmetric Badge" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/06/xmlui-altmetric-sharing.png" alt="DSpace 5.1 XMLUI With Altmetric Badge" /></p> <ul> <li>Run all system updates on the servers and reboot</li> @@ -3378,7 +3387,7 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D <li>Fix a reference to <code>dc.type.output</code> in Discovery that I had missed when we migrated to <code>dc.type</code> last month (<a href="https://github.com/ilri/DSpace/pull/223">#223</a>)</li> </ul> -<p><img src="2016/05/discovery-types.png" alt="Item type in Discovery results" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/05/discovery-types.png" alt="Item type in Discovery results" /></p> <h2 id="2016-05-06">2016-05-06</h2> @@ -4151,7 +4160,7 @@ dspace.log.2016-04-27:7271 <li>It is very messed up because some labels are incorrect, fields are missing, etc</li> </ul> -<p><img src="2016/03/cua-label-mixup.png" alt="Mixed up label in Atmire CUA" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/cua-label-mixup.png" alt="Mixed up label in Atmire CUA" /></p> <ul> <li>Update documentation for Atmire modules</li> @@ -4176,7 +4185,7 @@ dspace.log.2016-04-27:7271 <li>Also four or so center-specific subject strings were missing for Discovery</li> </ul> -<p><img src="2016/03/missing-xmlui-string.png" alt="Missing XMLUI string" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/missing-xmlui-string.png" alt="Missing XMLUI string" /></p> <h2 id="2016-03-15">2016-03-15</h2> @@ -4233,13 +4242,13 @@ dspace.log.2016-04-27:7271 <li>Some of their items end up with thumbnails that have a big white border around them:</li> </ul> -<p><img src="2016/03/bioversity-thumbnail-bad.jpg" alt="Excessive whitespace in thumbnail" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/bioversity-thumbnail-bad.jpg" alt="Excessive whitespace in thumbnail" /></p> <ul> <li>Turns out we can add <code>-trim</code> to the GraphicsMagick options to trim the whitespace</li> </ul> -<p><img src="2016/03/bioversity-thumbnail-good.jpg" alt="Trimmed thumbnail" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/bioversity-thumbnail-good.jpg" alt="Trimmed thumbnail" /></p> <ul> <li>Command used:</li> @@ -4273,7 +4282,7 @@ dspace.log.2016-04-27:7271 <li>On a related note, we have 51,000 items indexed from the sitemap, but 500,000 items in the Google index, so we DEFINITELY have a problem with duplicate content</li> </ul> -<p><img src="2016/03/google-index.png" alt="CGSpace pages in Google index" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/google-index.png" alt="CGSpace pages in Google index" /></p> <ul> <li>Turns out this is a problem with DSpace&rsquo;s <code>robots.txt</code>, and there&rsquo;s a Jira ticket since December, 2015: <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li> @@ -4281,8 +4290,8 @@ dspace.log.2016-04-27:7271 <li>For now I&rsquo;ve just set a bunch of these dynamic pages to not appear in search results by using the URL Parameters tool in Webmaster Tools</li> </ul> -<p><img src="2016/03/url-parameters.png" alt="URL parameters cause millions of dynamic pages" /> -<img src="2016/03/url-parameters2.png" alt="Setting pages with the filter_0 param not to show in search results" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/url-parameters.png" alt="URL parameters cause millions of dynamic pages" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/url-parameters2.png" alt="Setting pages with the filter_0 param not to show in search results" /></p> <ul> <li>Move AVCD collection to new community and update <code>move_collection.sh</code> script: <a href="https://gist.github.com/alanorth/392c4660e8b022d99dfa">https://gist.github.com/alanorth/392c4660e8b022d99dfa</a></li> @@ -4365,7 +4374,7 @@ dspace.log.2016-04-27:7271 <li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li> </ul> -<p><img src="2016/02/cgspace-countries.png" alt="CGSpace country list" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p> <ul> <li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li> @@ -4476,8 +4485,8 @@ $ /opt/brew/Cellar/tomcat/8.0.30/bin/catalina start <li>Whip up some quick CSS to make the button in the submission workflow use the XMLUI theme&rsquo;s brand colors (<a href="https://github.com/ilri/DSpace/issues/154">#154</a>)</li> </ul> -<p><img src="2016/02/submit-button-ilri.png" alt="ILRI submission buttons" /> -<img src="2016/02/submit-button-drylands.png" alt="Drylands submission buttons" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/02/submit-button-ilri.png" alt="ILRI submission buttons" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/02/submit-button-drylands.png" alt="Drylands submission buttons" /></p> <h2 id="2016-02-09">2016-02-09</h2> @@ -4769,13 +4778,13 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} <li>This <a href="https://cgspace.cgiar.org/handle/10568/67062">CCAFS item</a> Before:</li> </ul> -<p><img src="2016/01/xmlui-subjects-before.png" alt="XMLUI subjects before" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/01/xmlui-subjects-before.png" alt="XMLUI subjects before" /></p> <ul> <li>After:</li> </ul> -<p><img src="2016/01/xmlui-subjects-after.png" alt="XMLUI subjects after" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/01/xmlui-subjects-after.png" alt="XMLUI subjects after" /></p> @@ -4859,7 +4868,7 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle <li>CCAFS noticed that one of their items displays only the Atmire statlets: <a href="https://cgspace.cgiar.org/handle/10568/42445">https://cgspace.cgiar.org/handle/10568/42445</a></li> </ul> -<p><img src="2015/12/ccafs-item-no-metadata.png" alt="CCAFS item" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/ccafs-item-no-metadata.png" alt="CCAFS item" /></p> <ul> <li>The authorizations for the item are all public READ, and I don&rsquo;t see any errors in dspace.log when browsing that item</li> @@ -4915,10 +4924,10 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle <li>The PostgreSQL stats from Munin all point to something database-related with the DSpace 5 upgrade around mid–late November</li> </ul> -<p><img src="2015/12/postgres_bgwriter-year.png" alt="PostgreSQL bgwriter (year)" /> -<img src="2015/12/postgres_cache_cgspace-year.png" alt="PostgreSQL cache (year)" /> -<img src="2015/12/postgres_locks_cgspace-year.png" alt="PostgreSQL locks (year)" /> -<img src="2015/12/postgres_scans_cgspace-year.png" alt="PostgreSQL scans (year)" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_bgwriter-year.png" alt="PostgreSQL bgwriter (year)" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_cache_cgspace-year.png" alt="PostgreSQL cache (year)" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_locks_cgspace-year.png" alt="PostgreSQL locks (year)" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_scans_cgspace-year.png" alt="PostgreSQL scans (year)" /></p> <h2 id="2015-12-07">2015-12-07</h2> diff --git a/public/post/page/2/index.html b/public/post/page/2/index.html index d76e6112a..c7fde8905 100644 --- a/public/post/page/2/index.html +++ b/public/post/page/2/index.html @@ -130,7 +130,7 @@
                        1. I noticed we have a very interesting list of countries on CGSpace:
                    -

                    CGSpace country list

                    +

                    CGSpace country list

                    • Not only are there 49,000 countries, we have some blanks (25)…
                      • @@ -243,6 +243,7 @@ +

                      Recent Posts

                      @@ -262,6 +263,8 @@
                      + +

                      Links

                        diff --git a/public/tags/notes/index.html b/public/tags/notes/index.html index f1ab5ad2b..f10667247 100644 --- a/public/tags/notes/index.html +++ b/public/tags/notes/index.html @@ -347,6 +347,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and +

                        Recent Posts

                        @@ -366,6 +367,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
                        + +

                        Links

                          diff --git a/public/tags/notes/index.xml b/public/tags/notes/index.xml index 2d11d1a5e..7b9c54ada 100644 --- a/public/tags/notes/index.xml +++ b/public/tags/notes/index.xml @@ -111,6 +111,15 @@ Caused by: java.net.SocketException: Broken pipe (Write failed) <ul> <li>Put Sisay&rsquo;s <code>item-view.xsl</code> code to show mapped collections on CGSpace (<a href="https://github.com/ilri/DSpace/pull/295">#295</a>)</li> </ul> + +<h2 id="2017-01-09">2017-01-09</h2> + +<ul> +<li>A user wrote to tell me that the new display of an item&rsquo;s mappings had a crazy bug for at least one item: <a href="https://cgspace.cgiar.org/handle/10568/78596">https://cgspace.cgiar.org/handle/10568/78596</a></li> +<li>She said she only mapped it once, but it appears to be mapped 184 times</li> +</ul> + +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2017/01/mapping-crazy-duplicate.png" alt="Crazy item mapping" /></p> @@ -594,8 +603,8 @@ dspace=# update metadatavalue set authority='2df8136e-d8f4-4142-b58c-562337c <li>After enabling a sizable <code>shared_buffers</code> for CGSpace&rsquo;s PostgreSQL configuration the number of connections to the database dropped significantly</li> </ul> -<p><img src="2016/12/postgres_bgwriter-week.png" alt="postgres_bgwriter-week" /> -<img src="2016/12/postgres_connections_ALL-week.png" alt="postgres_connections_ALL-week" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_bgwriter-week.png" alt="postgres_bgwriter-week" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_connections_ALL-week.png" alt="postgres_connections_ALL-week" /></p> <ul> <li>Looking at CIAT records from last week again, they have a lot of double authors like:</li> @@ -640,8 +649,8 @@ UPDATE 35 <li>Checking in on CGSpace postgres stats again, looks like the <code>shared_buffers</code> change from a few days ago really made a big impact:</li> </ul> -<p><img src="2016/12/postgres_bgwriter-week-2016-12-13.png" alt="postgres_bgwriter-week" /> -<img src="2016/12/postgres_connections_ALL-week-2016-12-13.png" alt="postgres_connections_ALL-week" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_bgwriter-week-2016-12-13.png" alt="postgres_bgwriter-week" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/postgres_connections_ALL-week-2016-12-13.png" alt="postgres_connections_ALL-week" /></p> <ul> <li>Looking at logs, it seems we need to evaluate which logs we keep and for how long</li> @@ -758,8 +767,8 @@ Caused by: java.lang.NoSuchMethodError: com.atmire.statistics.generator.DSpaceOb <li>Run a batch edit to add &ldquo;RANGELANDS&rdquo; ILRI subject to all items containing the word &ldquo;RANGELANDS&rdquo; in their metadata for Peter Ballantyne</li> </ul> -<p><img src="2016/12/batch-edit1.png" alt="Select all items with &quot;rangelands&quot; in metadata" /> -<img src="2016/12/batch-edit2.png" alt="Add RANGELANDS ILRI subject" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/batch-edit1.png" alt="Select all items with &quot;rangelands&quot; in metadata" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/12/batch-edit2.png" alt="Add RANGELANDS ILRI subject" /></p> <h2 id="2016-12-18">2016-12-18</h2> @@ -893,7 +902,7 @@ $ exit <li>Add <code>dc.type</code> to the output options for Atmire&rsquo;s Listings and Reports module (<a href="https://github.com/ilri/DSpace/pull/286">#286</a>)</li> </ul> -<p><img src="2016/11/listings-and-reports.png" alt="Listings and Reports with output type" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/listings-and-reports.png" alt="Listings and Reports with output type" /></p> <h2 id="2016-11-02">2016-11-02</h2> @@ -979,7 +988,7 @@ COPY 22 <li>Atmire&rsquo;s Listings and Reports module seems to be broken on DSpace 5.5</li> </ul> -<p><img src="2016/11/listings-and-reports-55.png" alt="Listings and Reports broken in DSpace 5.5" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/listings-and-reports-55.png" alt="Listings and Reports broken in DSpace 5.5" /></p> <ul> <li>I&rsquo;ve filed a ticket with Atmire</li> @@ -1177,8 +1186,8 @@ X-Cocoon-Version: 2.2.0 <li>The Tomcat JVM heap looks really good after applying the Crawler Session Manager fix on DSpace Test last night:</li> </ul> -<p><img src="2016/11/dspacetest-tomcat-jvm-day.png" alt="Tomcat JVM heap (day) after setting up the Crawler Session Manager" /> -<img src="2016/11/dspacetest-tomcat-jvm-week.png" alt="Tomcat JVM heap (week) after setting up the Crawler Session Manager" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/dspacetest-tomcat-jvm-day.png" alt="Tomcat JVM heap (day) after setting up the Crawler Session Manager" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/11/dspacetest-tomcat-jvm-week.png" alt="Tomcat JVM heap (week) after setting up the Crawler Session Manager" /></p> <ul> <li>Seems the default regex doesn&rsquo;t catch Baidu, though:</li> @@ -1462,7 +1471,7 @@ org.dspace.discovery.SearchServiceException: Error executing query <li>I added the <a href="https://github.com/ilri/DSpace/issues/234">disclaimer text</a> to the About page, then added a footer link to the disclaimer&rsquo;s ID, but there is a Bootstrap issue that causes the page content to disappear when using in-page anchors: <a href="https://github.com/twbs/bootstrap/issues/1768">https://github.com/twbs/bootstrap/issues/1768</a></li> </ul> -<p><img src="2016/10/bootstrap-issue.png" alt="Bootstrap issue with in-page anchors" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/bootstrap-issue.png" alt="Bootstrap issue with in-page anchors" /></p> <ul> <li>Looks like we&rsquo;ll just have to add the text to the About page (without a link) or add a separate page</li> @@ -1510,7 +1519,7 @@ $ ./delete-metadata-values.py -i authors-delete-3.csv -f dc.contributor.author - <li>Magdalena from CCAFS asked why the colors in the thumbnails for these <a href="https://cgspace.cgiar.org/handle/10568/71249">two</a> <a href="https://cgspace.cgiar.org/handle/10568/71259">items</a> look different, even though they are the same in the PDF itself</li> </ul> -<p><img src="2016/10/cmyk-vs-srgb.jpg" alt="CMYK vs sRGB colors" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/cmyk-vs-srgb.jpg" alt="CMYK vs sRGB colors" /></p> <ul> <li>Turns out the first PDF was exported from InDesign using CMYK and the second one was using sRGB</li> @@ -1692,8 +1701,8 @@ UPDATE 0 <li>Looks much better now:</li> </ul> -<p><img src="2016/10/cgspace-icons.png" alt="CGSpace with old icons" /> -<img src="2016/10/dspacetest-fontawesome-icons.png" alt="DSpace Test with Font Awesome icons" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/cgspace-icons.png" alt="CGSpace with old icons" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/10/dspacetest-fontawesome-icons.png" alt="DSpace Test with Font Awesome icons" /></p> <ul> <li>Run the same replacements on CGSpace</li> @@ -1785,7 +1794,7 @@ distinguishedName: CN=Last\, First (ILRI),OU=ILRI Ethiopia Employees,OU=ILRI Eth <li>Changing the DSpace LDAP config to use <code>OU=ILRIHUB</code> seems to work:</li> </ul> -<p><img src="2016/09/ilri-ldap-users.png" alt="DSpace groups based on LDAP DN" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/ilri-ldap-users.png" alt="DSpace groups based on LDAP DN" /></p> <ul> <li>Notes for local PostgreSQL database recreation from production snapshot:</li> @@ -2132,9 +2141,9 @@ java.util.Map does not have a no-arg default constructor. <li>Perhaps these particular issues <em>are</em> memory issues, the munin graphs definitely show some weird purging/allocating behavior starting this week</li> </ul> -<p><img src="2016/09/tomcat_jvm-day.png" alt="Tomcat JVM usage day" /> -<img src="2016/09/tomcat_jvm-week.png" alt="Tomcat JVM usage week" /> -<img src="2016/09/tomcat_jvm-month.png" alt="Tomcat JVM usage month" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/tomcat_jvm-day.png" alt="Tomcat JVM usage day" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/tomcat_jvm-week.png" alt="Tomcat JVM usage week" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/tomcat_jvm-month.png" alt="Tomcat JVM usage month" /></p> <ul> <li>And really, we did reduce the memory of CGSpace in late 2015, so maybe we should just increase it again, now that our usage is higher and we are having memory errors in the logs</li> @@ -2156,7 +2165,7 @@ java.util.Map does not have a no-arg default constructor. <li>Looking at Google Webmaster Tools again, it seems the work I did on URL query parameters and blocking via the <code>X-Robots-Tag</code> HTTP header in March, 2016 seem to have had a positive effect on Google&rsquo;s index for CGSpace</li> </ul> -<p><img src="2016/09/google-webmaster-tools-index.png" alt="Google Webmaster Tools for CGSpace" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/google-webmaster-tools-index.png" alt="Google Webmaster Tools for CGSpace" /></p> <h2 id="2016-09-16">2016-09-16</h2> @@ -2244,8 +2253,8 @@ $ ./delete-metadata-values.py -f cg.contributor.affiliation -i affiliations_pb-2 <li>It actually works really well, and search results return much less hits now (before, after):</li> </ul> -<p><img src="2016/09/cgspace-search.png" alt="CGSpace search with &quot;OR&quot; boolean logic" /> -<img src="2016/09/dspacetest-search.png" alt="DSpace Test search with &quot;AND&quot; boolean logic" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/cgspace-search.png" alt="CGSpace search with &quot;OR&quot; boolean logic" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/09/dspacetest-search.png" alt="DSpace Test search with &quot;AND&quot; boolean logic" /></p> <ul> <li>Found a way to improve the configuration of Atmire&rsquo;s Content and Usage Analysis (CUA) module for date fields</li> @@ -2522,7 +2531,7 @@ $ ln -sv ~/dspace/webapps/solr /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/sol <li>Finally got DSpace (5.5) running on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5 via the updated Ansible stuff</li> </ul> -<p><img src="2016/08/dspace55-ubuntu16.04.png" alt="DSpace 5.5 on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/08/dspace55-ubuntu16.04.png" alt="DSpace 5.5 on Ubuntu 16.04, Tomcat 7, Java 8, PostgreSQL 9.5" /></p> <h2 id="2016-08-14">2016-08-14</h2> @@ -2536,7 +2545,7 @@ $ ln -sv ~/dspace/webapps/solr /opt/brew/Cellar/tomcat/8.5.4/libexec/webapps/sol <li>Notes on NodeJS + nginx + systemd: <a href="https://gist.github.com/alanorth/51acd476891c67dfe27725848cf5ace1">https://gist.github.com/alanorth/51acd476891c67dfe27725848cf5ace1</a></li> </ul> -<p><img src="2016/08/nodejs-nginx.png" alt="ExpressJS running behind nginx" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/08/nodejs-nginx.png" alt="ExpressJS running behind nginx" /></p> <h2 id="2016-08-16">2016-08-16</h2> @@ -2958,7 +2967,7 @@ index.authority.ignore-variants=true <li>Integrate and massively clean up About page (<a href="https://github.com/ilri/DSpace/pull/256">#256</a>)</li> </ul> -<p><img src="2016/07/cgspace-about-page.png" alt="About page" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/07/cgspace-about-page.png" alt="About page" /></p> <ul> <li>The DSpace source code mentions the configuration key <code>discovery.index.authority.ignore-prefered.*</code> (with prefix of discovery, despite the docs saying otherwise), so I&rsquo;m trying the following on DSpace Test:</li> @@ -3313,7 +3322,7 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D <li>Now the sharing and Altmetric bits are more prominent:</li> </ul> -<p><img src="2016/06/xmlui-altmetric-sharing.png" alt="DSpace 5.1 XMLUI With Altmetric Badge" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/06/xmlui-altmetric-sharing.png" alt="DSpace 5.1 XMLUI With Altmetric Badge" /></p> <ul> <li>Run all system updates on the servers and reboot</li> @@ -3377,7 +3386,7 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D <li>Fix a reference to <code>dc.type.output</code> in Discovery that I had missed when we migrated to <code>dc.type</code> last month (<a href="https://github.com/ilri/DSpace/pull/223">#223</a>)</li> </ul> -<p><img src="2016/05/discovery-types.png" alt="Item type in Discovery results" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/05/discovery-types.png" alt="Item type in Discovery results" /></p> <h2 id="2016-05-06">2016-05-06</h2> @@ -4150,7 +4159,7 @@ dspace.log.2016-04-27:7271 <li>It is very messed up because some labels are incorrect, fields are missing, etc</li> </ul> -<p><img src="2016/03/cua-label-mixup.png" alt="Mixed up label in Atmire CUA" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/cua-label-mixup.png" alt="Mixed up label in Atmire CUA" /></p> <ul> <li>Update documentation for Atmire modules</li> @@ -4175,7 +4184,7 @@ dspace.log.2016-04-27:7271 <li>Also four or so center-specific subject strings were missing for Discovery</li> </ul> -<p><img src="2016/03/missing-xmlui-string.png" alt="Missing XMLUI string" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/missing-xmlui-string.png" alt="Missing XMLUI string" /></p> <h2 id="2016-03-15">2016-03-15</h2> @@ -4232,13 +4241,13 @@ dspace.log.2016-04-27:7271 <li>Some of their items end up with thumbnails that have a big white border around them:</li> </ul> -<p><img src="2016/03/bioversity-thumbnail-bad.jpg" alt="Excessive whitespace in thumbnail" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/bioversity-thumbnail-bad.jpg" alt="Excessive whitespace in thumbnail" /></p> <ul> <li>Turns out we can add <code>-trim</code> to the GraphicsMagick options to trim the whitespace</li> </ul> -<p><img src="2016/03/bioversity-thumbnail-good.jpg" alt="Trimmed thumbnail" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/bioversity-thumbnail-good.jpg" alt="Trimmed thumbnail" /></p> <ul> <li>Command used:</li> @@ -4272,7 +4281,7 @@ dspace.log.2016-04-27:7271 <li>On a related note, we have 51,000 items indexed from the sitemap, but 500,000 items in the Google index, so we DEFINITELY have a problem with duplicate content</li> </ul> -<p><img src="2016/03/google-index.png" alt="CGSpace pages in Google index" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/google-index.png" alt="CGSpace pages in Google index" /></p> <ul> <li>Turns out this is a problem with DSpace&rsquo;s <code>robots.txt</code>, and there&rsquo;s a Jira ticket since December, 2015: <a href="https://jira.duraspace.org/browse/DS-2962">https://jira.duraspace.org/browse/DS-2962</a></li> @@ -4280,8 +4289,8 @@ dspace.log.2016-04-27:7271 <li>For now I&rsquo;ve just set a bunch of these dynamic pages to not appear in search results by using the URL Parameters tool in Webmaster Tools</li> </ul> -<p><img src="2016/03/url-parameters.png" alt="URL parameters cause millions of dynamic pages" /> -<img src="2016/03/url-parameters2.png" alt="Setting pages with the filter_0 param not to show in search results" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/url-parameters.png" alt="URL parameters cause millions of dynamic pages" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/03/url-parameters2.png" alt="Setting pages with the filter_0 param not to show in search results" /></p> <ul> <li>Move AVCD collection to new community and update <code>move_collection.sh</code> script: <a href="https://gist.github.com/alanorth/392c4660e8b022d99dfa">https://gist.github.com/alanorth/392c4660e8b022d99dfa</a></li> @@ -4364,7 +4373,7 @@ dspace.log.2016-04-27:7271 <li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li> </ul> -<p><img src="2016/02/cgspace-countries.png" alt="CGSpace country list" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p> <ul> <li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li> @@ -4475,8 +4484,8 @@ $ /opt/brew/Cellar/tomcat/8.0.30/bin/catalina start <li>Whip up some quick CSS to make the button in the submission workflow use the XMLUI theme&rsquo;s brand colors (<a href="https://github.com/ilri/DSpace/issues/154">#154</a>)</li> </ul> -<p><img src="2016/02/submit-button-ilri.png" alt="ILRI submission buttons" /> -<img src="2016/02/submit-button-drylands.png" alt="Drylands submission buttons" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/02/submit-button-ilri.png" alt="ILRI submission buttons" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/02/submit-button-drylands.png" alt="Drylands submission buttons" /></p> <h2 id="2016-02-09">2016-02-09</h2> @@ -4768,13 +4777,13 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} <li>This <a href="https://cgspace.cgiar.org/handle/10568/67062">CCAFS item</a> Before:</li> </ul> -<p><img src="2016/01/xmlui-subjects-before.png" alt="XMLUI subjects before" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/01/xmlui-subjects-before.png" alt="XMLUI subjects before" /></p> <ul> <li>After:</li> </ul> -<p><img src="2016/01/xmlui-subjects-after.png" alt="XMLUI subjects after" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2016/01/xmlui-subjects-after.png" alt="XMLUI subjects after" /></p> @@ -4858,7 +4867,7 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle <li>CCAFS noticed that one of their items displays only the Atmire statlets: <a href="https://cgspace.cgiar.org/handle/10568/42445">https://cgspace.cgiar.org/handle/10568/42445</a></li> </ul> -<p><img src="2015/12/ccafs-item-no-metadata.png" alt="CCAFS item" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/ccafs-item-no-metadata.png" alt="CCAFS item" /></p> <ul> <li>The authorizations for the item are all public READ, and I don&rsquo;t see any errors in dspace.log when browsing that item</li> @@ -4914,10 +4923,10 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle <li>The PostgreSQL stats from Munin all point to something database-related with the DSpace 5 upgrade around mid–late November</li> </ul> -<p><img src="2015/12/postgres_bgwriter-year.png" alt="PostgreSQL bgwriter (year)" /> -<img src="2015/12/postgres_cache_cgspace-year.png" alt="PostgreSQL cache (year)" /> -<img src="2015/12/postgres_locks_cgspace-year.png" alt="PostgreSQL locks (year)" /> -<img src="2015/12/postgres_scans_cgspace-year.png" alt="PostgreSQL scans (year)" /></p> +<p><img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_bgwriter-year.png" alt="PostgreSQL bgwriter (year)" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_cache_cgspace-year.png" alt="PostgreSQL cache (year)" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_locks_cgspace-year.png" alt="PostgreSQL locks (year)" /> +<img src="https://alanorth.github.io/cgspace-notes/cgspace-notes/2015/12/postgres_scans_cgspace-year.png" alt="PostgreSQL scans (year)" /></p> <h2 id="2015-12-07">2015-12-07</h2> diff --git a/public/tags/notes/page/2/index.html b/public/tags/notes/page/2/index.html index 188bad2e1..8e1540a5e 100644 --- a/public/tags/notes/page/2/index.html +++ b/public/tags/notes/page/2/index.html @@ -130,7 +130,7 @@
                        1. I noticed we have a very interesting list of countries on CGSpace:
                    -

                    CGSpace country list

                    +

                    CGSpace country list

                    • Not only are there 49,000 countries, we have some blanks (25)…
                      • @@ -243,6 +243,7 @@ +

                      Recent Posts

                      @@ -262,6 +263,8 @@
                      + +

                      Links