From 549cf80beeb5a115386a911a22c3552b79720253 Mon Sep 17 00:00:00 2001 From: Alan Orth Date: Thu, 3 Jun 2021 21:54:49 +0300 Subject: [PATCH] Add notes for 2021-06-03 --- content/posts/2021-06.md | 41 ++++ docs/2015-11/index.html | 4 +- docs/2015-12/index.html | 4 +- docs/2016-01/index.html | 4 +- docs/2016-02/index.html | 4 +- docs/2016-03/index.html | 4 +- docs/2016-04/index.html | 4 +- docs/2016-05/index.html | 4 +- docs/2016-06/index.html | 4 +- docs/2016-07/index.html | 4 +- docs/2016-08/index.html | 4 +- docs/2016-09/index.html | 4 +- docs/2016-10/index.html | 4 +- docs/2016-11/index.html | 4 +- docs/2016-12/index.html | 4 +- docs/2017-01/index.html | 4 +- docs/2017-02/index.html | 4 +- docs/2017-03/index.html | 4 +- docs/2017-04/index.html | 4 +- docs/2017-05/index.html | 4 +- docs/2017-06/index.html | 4 +- docs/2017-07/index.html | 4 +- docs/2017-08/index.html | 4 +- docs/2017-09/index.html | 4 +- docs/2017-10/index.html | 4 +- docs/2017-11/index.html | 4 +- docs/2017-12/index.html | 4 +- docs/2018-01/index.html | 4 +- docs/2018-02/index.html | 4 +- docs/2018-03/index.html | 4 +- docs/2018-04/index.html | 4 +- docs/2018-05/index.html | 4 +- docs/2018-06/index.html | 4 +- docs/2018-07/index.html | 4 +- docs/2018-08/index.html | 4 +- docs/2018-09/index.html | 4 +- docs/2018-10/index.html | 4 +- docs/2018-11/index.html | 4 +- docs/2018-12/index.html | 4 +- docs/2019-01/index.html | 4 +- docs/2019-02/index.html | 4 +- docs/2019-03/index.html | 4 +- docs/2019-04/index.html | 4 +- docs/2019-05/index.html | 4 +- docs/2019-06/index.html | 4 +- docs/2019-07/index.html | 4 +- docs/2019-08/index.html | 4 +- docs/2019-09/index.html | 4 +- docs/2019-10/index.html | 4 +- docs/2019-11/index.html | 4 +- docs/2019-12/index.html | 4 +- docs/2020-01/index.html | 4 +- docs/2020-02/index.html | 4 +- docs/2020-03/index.html | 4 +- docs/2020-04/index.html | 4 +- docs/2020-05/index.html | 4 +- docs/2020-06/index.html | 4 +- docs/2020-07/index.html | 4 +- docs/2020-08/index.html | 4 +- docs/2020-09/index.html | 4 +- docs/2020-10/index.html | 4 +- docs/2020-11/index.html | 4 +- docs/2020-12/index.html | 4 +- docs/2021-01/index.html | 4 +- docs/2021-02/index.html | 4 +- docs/2021-03/index.html | 4 +- docs/2021-04/index.html | 4 +- docs/2021-05/index.html | 8 +- docs/2021-06/index.html | 233 +++++++++++++++++++++ docs/404.html | 4 +- docs/categories/index.html | 8 +- docs/categories/index.xml | 4 +- docs/categories/notes/index.html | 64 +++--- docs/categories/notes/index.xml | 20 +- docs/categories/notes/page/2/index.html | 69 +++--- docs/categories/notes/page/3/index.html | 83 ++++---- docs/categories/notes/page/4/index.html | 73 ++++--- docs/categories/notes/page/5/index.html | 28 ++- docs/cgiar-library-migration/index.html | 4 +- docs/cgspace-cgcorev2-migration/index.html | 4 +- docs/cgspace-dspace6-upgrade/index.html | 4 +- docs/index.html | 66 +++--- docs/index.xml | 20 +- docs/page/2/index.html | 71 ++++--- docs/page/3/index.html | 85 ++++---- docs/page/4/index.html | 75 ++++--- docs/page/5/index.html | 57 +++-- docs/page/6/index.html | 61 +++--- docs/page/7/index.html | 64 +++--- docs/page/8/index.html | 199 ++++++++++++++++++ docs/posts/index.html | 66 +++--- docs/posts/index.xml | 20 +- docs/posts/page/2/index.html | 71 ++++--- docs/posts/page/3/index.html | 85 ++++---- docs/posts/page/4/index.html | 75 ++++--- docs/posts/page/5/index.html | 57 +++-- docs/posts/page/6/index.html | 61 +++--- docs/posts/page/7/index.html | 64 +++--- docs/posts/page/8/index.html | 199 ++++++++++++++++++ docs/robots.txt | 3 +- docs/sitemap.xml | 15 +- docs/tags/index.html | 4 +- docs/tags/migration/index.html | 4 +- docs/tags/notes/index.html | 4 +- docs/tags/notes/page/2/index.html | 4 +- docs/tags/notes/page/3/index.html | 4 +- 106 files changed, 1552 insertions(+), 793 deletions(-) create mode 100644 content/posts/2021-06.md create mode 100644 docs/2021-06/index.html create mode 100644 docs/page/8/index.html create mode 100644 docs/posts/page/8/index.html diff --git a/content/posts/2021-06.md b/content/posts/2021-06.md new file mode 100644 index 000000000..c8a96d2ee --- /dev/null +++ b/content/posts/2021-06.md @@ -0,0 +1,41 @@ +--- +title: "June, 2021" +date: 2021-06-01T10:51:07+03:00 +author: "Alan Orth" +categories: ["Notes"] +--- + +## 2021-06-01 + +- IWMI notified me that AReS was down with an HTTP 502 error + - Looking at UptimeRobot I see it has been down for 33 hours, but I never got a notification + - I don't see anything in the Elasticsearch container logs, or the systemd journal on the host, but I notice that the `angular_nginx` container isn't running + - I simply started it and AReS was running again: + + + +```console +$ docker-compose -f docker/docker-compose.yml start angular_nginx +``` + +- Margarita from CCAFS emailed me to say that workflow alerts haven't been working lately + - I guess this is related to the SMTP issues last week + - I had fixed the config, but didn't restart Tomcat so DSpace didn't load the new variables + - I ran all system updates on CGSpace (linode18) and DSpace Test (linode26) and rebooted the servers + +## 2021-06-03 + +- Meeting with AMCOW and IWMI to discuss AMCOW getting IWMI's content into the new AMCOW Knowledge Hub + - At first we spent some time talking about DSpace communities/collections and the REST API, but then they said they actually prefer to send queries to sites on the fly and cache them in Redis for some time + - That's when I thought they could perhaps use the OpenSearch, but I can't remember if it's possible to limit by community, or only collection... + - Looking now, I see there is a "scope" parameter that can be used for community or collection, for example: + +``` +https://cgspace.cgiar.org/open-search/discover?query=subject:water%20scarcity&scope=10568/16814&order=DESC&rpp=100&sort_by=2&start=1 +``` + +- That will sort by date issued (see: `webui.itemlist.sort-option.2` in dspace.cfg), give 100 results per page, and start on item 1 +- Otherwise, another alternative would be to use the IWMI CSV that we are already exporting every week +- Fill out the *CGIAR-AGROVOC Task Group: Survey on the current CGIAR use of AGROVOC* survey on behalf of CGSpace + + diff --git a/docs/2015-11/index.html b/docs/2015-11/index.html index 133cab0c1..a3f696f86 100644 --- a/docs/2015-11/index.html +++ b/docs/2015-11/index.html @@ -242,6 +242,8 @@ db.statementpool = true
    +
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    2. +
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  3. April, 2021
    4. @@ -250,8 +252,6 @@ db.statementpool = true
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    5. -
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    6. -
diff --git a/docs/2015-12/index.html b/docs/2015-12/index.html index a1690d26a..ab493b975 100644 --- a/docs/2015-12/index.html +++ b/docs/2015-12/index.html @@ -264,6 +264,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
    +
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    2. +
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  3. April, 2021
    4. @@ -272,8 +274,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
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    6. -
diff --git a/docs/2016-01/index.html b/docs/2016-01/index.html index 040d1cc4f..383285b4c 100644 --- a/docs/2016-01/index.html +++ b/docs/2016-01/index.html @@ -200,6 +200,8 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
    +
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    2. +
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    4. @@ -208,8 +210,6 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
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diff --git a/docs/2016-02/index.html b/docs/2016-02/index.html index 8430ca199..48119c6f4 100644 --- a/docs/2016-02/index.html +++ b/docs/2016-02/index.html @@ -378,6 +378,8 @@ Bitstream: tést señora alimentación.pdf
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    2. +
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    4. @@ -386,8 +388,6 @@ Bitstream: tést señora alimentación.pdf
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diff --git a/docs/2016-03/index.html b/docs/2016-03/index.html index 9fecb5497..2817a2717 100644 --- a/docs/2016-03/index.html +++ b/docs/2016-03/index.html @@ -316,6 +316,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
    +
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    2. +
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    4. @@ -324,8 +326,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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diff --git a/docs/2016-04/index.html b/docs/2016-04/index.html index d4cbad371..36451888b 100644 --- a/docs/2016-04/index.html +++ b/docs/2016-04/index.html @@ -495,6 +495,8 @@ dspace.log.2016-04-27:7271
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    2. +
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    4. @@ -503,8 +505,6 @@ dspace.log.2016-04-27:7271
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diff --git a/docs/2016-05/index.html b/docs/2016-05/index.html index 16fcda76a..9be872ba1 100644 --- a/docs/2016-05/index.html +++ b/docs/2016-05/index.html @@ -371,6 +371,8 @@ sys 0m20.540s
    +
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    2. +
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    4. @@ -379,8 +381,6 @@ sys 0m20.540s
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diff --git a/docs/2016-06/index.html b/docs/2016-06/index.html index 30b30a658..fe74376f9 100644 --- a/docs/2016-06/index.html +++ b/docs/2016-06/index.html @@ -409,6 +409,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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    2. +
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    4. @@ -417,8 +419,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
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diff --git a/docs/2016-07/index.html b/docs/2016-07/index.html index 3cea1c9c0..ba145c7cc 100644 --- a/docs/2016-07/index.html +++ b/docs/2016-07/index.html @@ -325,6 +325,8 @@ discovery.index.authority.ignore-variants=true
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    4. @@ -333,8 +335,6 @@ discovery.index.authority.ignore-variants=true
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diff --git a/docs/2016-08/index.html b/docs/2016-08/index.html index 23802529c..cd8e162e5 100644 --- a/docs/2016-08/index.html +++ b/docs/2016-08/index.html @@ -389,6 +389,8 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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    4. @@ -397,8 +399,6 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
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diff --git a/docs/2016-09/index.html b/docs/2016-09/index.html index 4c0275344..391c75425 100644 --- a/docs/2016-09/index.html +++ b/docs/2016-09/index.html @@ -606,6 +606,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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    4. @@ -614,8 +616,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
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diff --git a/docs/2016-10/index.html b/docs/2016-10/index.html index ba81ed239..c7c61f345 100644 --- a/docs/2016-10/index.html +++ b/docs/2016-10/index.html @@ -372,6 +372,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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    4. @@ -380,8 +382,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
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diff --git a/docs/2016-11/index.html b/docs/2016-11/index.html index 8af13244f..6810d192e 100644 --- a/docs/2016-11/index.html +++ b/docs/2016-11/index.html @@ -548,6 +548,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
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    4. @@ -556,8 +558,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
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diff --git a/docs/2016-12/index.html b/docs/2016-12/index.html index 2267b73f7..d65879f4e 100644 --- a/docs/2016-12/index.html +++ b/docs/2016-12/index.html @@ -784,6 +784,8 @@ $ exit
    +
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diff --git a/docs/2017-01/index.html b/docs/2017-01/index.html index 0fdefbe15..022b86b86 100644 --- a/docs/2017-01/index.html +++ b/docs/2017-01/index.html @@ -369,6 +369,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
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    4. @@ -377,8 +379,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
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diff --git a/docs/2017-02/index.html b/docs/2017-02/index.html index c0da28806..064da78bd 100644 --- a/docs/2017-02/index.html +++ b/docs/2017-02/index.html @@ -424,6 +424,8 @@ COPY 1968
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diff --git a/docs/2017-03/index.html b/docs/2017-03/index.html index 88e305d32..e31d38a3c 100644 --- a/docs/2017-03/index.html +++ b/docs/2017-03/index.html @@ -355,6 +355,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
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    4. @@ -363,8 +365,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
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diff --git a/docs/2017-04/index.html b/docs/2017-04/index.html index 6ee83c92f..03837bc96 100644 --- a/docs/2017-04/index.html +++ b/docs/2017-04/index.html @@ -585,6 +585,8 @@ $ gem install compass -v 1.0.3
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diff --git a/docs/2017-05/index.html b/docs/2017-05/index.html index b97384d15..b8eeff1e9 100644 --- a/docs/2017-05/index.html +++ b/docs/2017-05/index.html @@ -391,6 +391,8 @@ UPDATE 187
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diff --git a/docs/2017-06/index.html b/docs/2017-06/index.html index 16ac11862..bbfd3e965 100644 --- a/docs/2017-06/index.html +++ b/docs/2017-06/index.html @@ -270,6 +270,8 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
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    4. @@ -278,8 +280,6 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
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diff --git a/docs/2017-07/index.html b/docs/2017-07/index.html index 43ac54a35..4de6630d9 100644 --- a/docs/2017-07/index.html +++ b/docs/2017-07/index.html @@ -275,6 +275,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
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diff --git a/docs/2017-08/index.html b/docs/2017-08/index.html index 920097669..d82226800 100644 --- a/docs/2017-08/index.html +++ b/docs/2017-08/index.html @@ -517,6 +517,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
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    4. @@ -525,8 +527,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
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diff --git a/docs/2017-09/index.html b/docs/2017-09/index.html index e07c0c74b..f235de65e 100644 --- a/docs/2017-09/index.html +++ b/docs/2017-09/index.html @@ -659,6 +659,8 @@ Cert Status: good
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diff --git a/docs/2017-10/index.html b/docs/2017-10/index.html index 73dcb2f03..ff693e213 100644 --- a/docs/2017-10/index.html +++ b/docs/2017-10/index.html @@ -443,6 +443,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
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    4. @@ -451,8 +453,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
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diff --git a/docs/2017-11/index.html b/docs/2017-11/index.html index 36545c0b1..66ed1f113 100644 --- a/docs/2017-11/index.html +++ b/docs/2017-11/index.html @@ -944,6 +944,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
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diff --git a/docs/2017-12/index.html b/docs/2017-12/index.html index e1e497ed9..8bb578f21 100644 --- a/docs/2017-12/index.html +++ b/docs/2017-12/index.html @@ -783,6 +783,8 @@ DELETE 20
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    4. @@ -791,8 +793,6 @@ DELETE 20
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diff --git a/docs/2018-01/index.html b/docs/2018-01/index.html index 03b1403f0..75f0cd4cd 100644 --- a/docs/2018-01/index.html +++ b/docs/2018-01/index.html @@ -1452,6 +1452,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
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diff --git a/docs/2018-02/index.html b/docs/2018-02/index.html index 7ef1e376a..ef7f9ff2f 100644 --- a/docs/2018-02/index.html +++ b/docs/2018-02/index.html @@ -1039,6 +1039,8 @@ UPDATE 3
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    4. @@ -1047,8 +1049,6 @@ UPDATE 3
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diff --git a/docs/2018-03/index.html b/docs/2018-03/index.html index 9f4e9e5c0..424dedc05 100644 --- a/docs/2018-03/index.html +++ b/docs/2018-03/index.html @@ -585,6 +585,8 @@ Fixed 5 occurences of: GENEBANKS
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    4. @@ -593,8 +595,6 @@ Fixed 5 occurences of: GENEBANKS
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diff --git a/docs/2018-04/index.html b/docs/2018-04/index.html index b5a13c516..95b5c3a28 100644 --- a/docs/2018-04/index.html +++ b/docs/2018-04/index.html @@ -594,6 +594,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
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    4. @@ -602,8 +604,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
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  5. February, 2021
    6. -
diff --git a/docs/2018-05/index.html b/docs/2018-05/index.html index e48019fa4..841bc3a6e 100644 --- a/docs/2018-05/index.html +++ b/docs/2018-05/index.html @@ -523,6 +523,8 @@ $ psql -h localhost -U postgres dspacetest
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -531,8 +533,6 @@ $ psql -h localhost -U postgres dspacetest
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2018-06/index.html b/docs/2018-06/index.html index 8a17414e1..99451b9a0 100644 --- a/docs/2018-06/index.html +++ b/docs/2018-06/index.html @@ -517,6 +517,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -525,8 +527,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2018-07/index.html b/docs/2018-07/index.html index bdf84c594..7c3fd56c6 100644 --- a/docs/2018-07/index.html +++ b/docs/2018-07/index.html @@ -569,6 +569,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -577,8 +579,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2018-08/index.html b/docs/2018-08/index.html index 2023df68b..765404717 100644 --- a/docs/2018-08/index.html +++ b/docs/2018-08/index.html @@ -442,6 +442,8 @@ $ dspace database migrate ignored
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -450,8 +452,6 @@ $ dspace database migrate ignored
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2018-09/index.html b/docs/2018-09/index.html index 8c5cb11ac..8199526e3 100644 --- a/docs/2018-09/index.html +++ b/docs/2018-09/index.html @@ -748,6 +748,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -756,8 +758,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2018-10/index.html b/docs/2018-10/index.html index 6bd8dffe3..ad2141b28 100644 --- a/docs/2018-10/index.html +++ b/docs/2018-10/index.html @@ -656,6 +656,8 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -664,8 +666,6 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2018-11/index.html b/docs/2018-11/index.html index a8fc6f38d..e784c3cda 100644 --- a/docs/2018-11/index.html +++ b/docs/2018-11/index.html @@ -553,6 +553,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -561,8 +563,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2018-12/index.html b/docs/2018-12/index.html index 18c11431a..997679551 100644 --- a/docs/2018-12/index.html +++ b/docs/2018-12/index.html @@ -594,6 +594,8 @@ UPDATE 1
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -602,8 +604,6 @@ UPDATE 1
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-01/index.html b/docs/2019-01/index.html index 47ae2a46b..ebc17255f 100644 --- a/docs/2019-01/index.html +++ b/docs/2019-01/index.html @@ -1264,6 +1264,8 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -1272,8 +1274,6 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-02/index.html b/docs/2019-02/index.html index bbaac58d2..2ab70b40e 100644 --- a/docs/2019-02/index.html +++ b/docs/2019-02/index.html @@ -1344,6 +1344,8 @@ Please see the DSpace documentation for assistance.
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -1352,8 +1354,6 @@ Please see the DSpace documentation for assistance.
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-03/index.html b/docs/2019-03/index.html index 2377bf690..5c37cc331 100644 --- a/docs/2019-03/index.html +++ b/docs/2019-03/index.html @@ -1208,6 +1208,8 @@ sys 0m2.551s
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -1216,8 +1218,6 @@ sys 0m2.551s
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-04/index.html b/docs/2019-04/index.html index 54f0c9512..5a5b04b08 100644 --- a/docs/2019-04/index.html +++ b/docs/2019-04/index.html @@ -1299,6 +1299,8 @@ UPDATE 14
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -1307,8 +1309,6 @@ UPDATE 14
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-05/index.html b/docs/2019-05/index.html index 53fc4c306..5d3df8450 100644 --- a/docs/2019-05/index.html +++ b/docs/2019-05/index.html @@ -631,6 +631,8 @@ COPY 64871
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -639,8 +641,6 @@ COPY 64871
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-06/index.html b/docs/2019-06/index.html index 8e3e5f862..ad13e36ff 100644 --- a/docs/2019-06/index.html +++ b/docs/2019-06/index.html @@ -317,6 +317,8 @@ UPDATE 2
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -325,8 +327,6 @@ UPDATE 2
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-07/index.html b/docs/2019-07/index.html index 4e7e6daf6..d01f0082c 100644 --- a/docs/2019-07/index.html +++ b/docs/2019-07/index.html @@ -554,6 +554,8 @@ issn.validate('1020-3362')
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -562,8 +564,6 @@ issn.validate('1020-3362')
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-08/index.html b/docs/2019-08/index.html index 3fdb5b6d1..c4eb2e4f9 100644 --- a/docs/2019-08/index.html +++ b/docs/2019-08/index.html @@ -573,6 +573,8 @@ sys 2m27.496s
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -581,8 +583,6 @@ sys 2m27.496s
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-09/index.html b/docs/2019-09/index.html index a018ac5c6..611d1d91c 100644 --- a/docs/2019-09/index.html +++ b/docs/2019-09/index.html @@ -581,6 +581,8 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -589,8 +591,6 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-10/index.html b/docs/2019-10/index.html index 4555f0222..c30f1da29 100644 --- a/docs/2019-10/index.html +++ b/docs/2019-10/index.html @@ -385,6 +385,8 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -393,8 +395,6 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-11/index.html b/docs/2019-11/index.html index 7ee9f4b9d..8a3955f0e 100644 --- a/docs/2019-11/index.html +++ b/docs/2019-11/index.html @@ -692,6 +692,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -700,8 +702,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2019-12/index.html b/docs/2019-12/index.html index 292901e86..c43ccbde7 100644 --- a/docs/2019-12/index.html +++ b/docs/2019-12/index.html @@ -404,6 +404,8 @@ UPDATE 1
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -412,8 +414,6 @@ UPDATE 1
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-01/index.html b/docs/2020-01/index.html index 33d7fadfe..cf9842ad9 100644 --- a/docs/2020-01/index.html +++ b/docs/2020-01/index.html @@ -604,6 +604,8 @@ COPY 2900
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -612,8 +614,6 @@ COPY 2900
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-02/index.html b/docs/2020-02/index.html index 2630bd225..3bc43f5eb 100644 --- a/docs/2020-02/index.html +++ b/docs/2020-02/index.html @@ -1275,6 +1275,8 @@ Moving: 21993 into core statistics-2019
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -1283,8 +1285,6 @@ Moving: 21993 into core statistics-2019
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-03/index.html b/docs/2020-03/index.html index e12f8c87d..1160f27c7 100644 --- a/docs/2020-03/index.html +++ b/docs/2020-03/index.html @@ -484,6 +484,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -492,8 +494,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-04/index.html b/docs/2020-04/index.html index be7351d05..ec4a0638b 100644 --- a/docs/2020-04/index.html +++ b/docs/2020-04/index.html @@ -658,6 +658,8 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -666,8 +668,6 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-05/index.html b/docs/2020-05/index.html index e250839d4..bce8e214e 100644 --- a/docs/2020-05/index.html +++ b/docs/2020-05/index.html @@ -477,6 +477,8 @@ Caused by: java.lang.NullPointerException
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -485,8 +487,6 @@ Caused by: java.lang.NullPointerException
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-06/index.html b/docs/2020-06/index.html index c5e0df110..a2d853bb4 100644 --- a/docs/2020-06/index.html +++ b/docs/2020-06/index.html @@ -811,6 +811,8 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -819,8 +821,6 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-07/index.html b/docs/2020-07/index.html index ed1852d4e..a8802d285 100644 --- a/docs/2020-07/index.html +++ b/docs/2020-07/index.html @@ -1142,6 +1142,8 @@ Fixed 4 occurences of: Muloi, D.M.
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -1150,8 +1152,6 @@ Fixed 4 occurences of: Muloi, D.M.
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-08/index.html b/docs/2020-08/index.html index a6dae1708..91641eb07 100644 --- a/docs/2020-08/index.html +++ b/docs/2020-08/index.html @@ -798,6 +798,8 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -806,8 +808,6 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-09/index.html b/docs/2020-09/index.html index dab77def5..f2dc410f4 100644 --- a/docs/2020-09/index.html +++ b/docs/2020-09/index.html @@ -717,6 +717,8 @@ solr_query_params = {
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -725,8 +727,6 @@ solr_query_params = {
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-10/index.html b/docs/2020-10/index.html index bd16aaf6d..18cdeb89c 100644 --- a/docs/2020-10/index.html +++ b/docs/2020-10/index.html @@ -1241,6 +1241,8 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -1249,8 +1251,6 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-11/index.html b/docs/2020-11/index.html index f33fd8902..d69c91fb9 100644 --- a/docs/2020-11/index.html +++ b/docs/2020-11/index.html @@ -731,6 +731,8 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -739,8 +741,6 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2020-12/index.html b/docs/2020-12/index.html index ce7e27d06..817f11047 100644 --- a/docs/2020-12/index.html +++ b/docs/2020-12/index.html @@ -869,6 +869,8 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-2020-12-29?pretty'
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -877,8 +879,6 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-2020-12-29?pretty'
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2021-01/index.html b/docs/2021-01/index.html index 19b8fd102..60476f37e 100644 --- a/docs/2021-01/index.html +++ b/docs/2021-01/index.html @@ -688,6 +688,8 @@ java.lang.IllegalArgumentException: Invalid character found in the request targe
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -696,8 +698,6 @@ java.lang.IllegalArgumentException: Invalid character found in the request targe
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2021-02/index.html b/docs/2021-02/index.html index a7b4d38b1..8d9623db5 100644 --- a/docs/2021-02/index.html +++ b/docs/2021-02/index.html @@ -898,6 +898,8 @@ dspace.log.2021-02-28:0
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -906,8 +908,6 @@ dspace.log.2021-02-28:0
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2021-03/index.html b/docs/2021-03/index.html index 06f31dd60..a8e989718 100644 --- a/docs/2021-03/index.html +++ b/docs/2021-03/index.html @@ -875,6 +875,8 @@ COPY 3081
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -883,8 +885,6 @@ COPY 3081
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2021-04/index.html b/docs/2021-04/index.html index 44b19284b..1d24b2f18 100644 --- a/docs/2021-04/index.html +++ b/docs/2021-04/index.html @@ -1042,6 +1042,8 @@ $ ./ilri/doi-to-handle.py -i /tmp/dois.txt -o /tmp/handles.csv -db dspace63 -u d
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -1050,8 +1052,6 @@ $ ./ilri/doi-to-handle.py -i /tmp/dois.txt -o /tmp/handles.csv -db dspace63 -u d
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2021-05/index.html b/docs/2021-05/index.html index d6cba78a9..5dc420a92 100644 --- a/docs/2021-05/index.html +++ b/docs/2021-05/index.html @@ -20,7 +20,7 @@ I will add the RI/1.0 pattern to our DSpace agents overload and purge them from - + @@ -48,7 +48,7 @@ I will add the RI/1.0 pattern to our DSpace agents overload and purge them from "url": "https://alanorth.github.io/cgspace-notes/2021-05/", "wordCount": "3605", "datePublished": "2021-05-02T09:50:54+03:00", - "dateModified": "2021-05-26T15:25:23+03:00", + "dateModified": "2021-05-30T22:09:06+03:00", "author": { "@type": "Person", "name": "Alan Orth" @@ -685,6 +685,8 @@ Please see the DSpace documentation for assistance.
    +
  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -693,8 +695,6 @@ Please see the DSpace documentation for assistance.
  4. CGSpace CG Core v2 Migration
    5. -
  5. February, 2021
    6. -
diff --git a/docs/2021-06/index.html b/docs/2021-06/index.html new file mode 100644 index 000000000..e64d39c13 --- /dev/null +++ b/docs/2021-06/index.html @@ -0,0 +1,233 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + June, 2021 | CGSpace Notes + + + + + + + + + + + + + + + + + + + + + +
+
+ +
+
+ + + + +
+
+

CGSpace Notes

+

Documenting day-to-day work on the CGSpace repository.

+
+
+ + + + +
+
+
+ + + + +
+
+

June, 2021

+

+ + in + Notes + + +

+
+

2021-06-01

+
    +
  • IWMI notified me that AReS was down with an HTTP 502 error +
      +
    • Looking at UptimeRobot I see it has been down for 33 hours, but I never got a notification
      • +
    • I don’t see anything in the Elasticsearch container logs, or the systemd journal on the host, but I notice that the angular_nginx container isn’t running
      • +
    • I simply started it and AReS was running again:
      • +
    +
    • +
+
$ docker-compose -f docker/docker-compose.yml start angular_nginx
+
    +
  • Margarita from CCAFS emailed me to say that workflow alerts haven’t been working lately +
      +
    • I guess this is related to the SMTP issues last week
      • +
    • I had fixed the config, but didn’t restart Tomcat so DSpace didn’t load the new variables
      • +
    • I ran all system updates on CGSpace (linode18) and DSpace Test (linode26) and rebooted the servers
      • +
    +
    • +
+

2021-06-03

+
    +
  • Meeting with AMCOW and IWMI to discuss AMCOW getting IWMI’s content into the new AMCOW Knowledge Hub +
      +
    • At first we spent some time talking about DSpace communities/collections and the REST API, but then they said they actually prefer to send queries to sites on the fly and cache them in Redis for some time
      • +
    • That’s when I thought they could perhaps use the OpenSearch, but I can’t remember if it’s possible to limit by community, or only collection…
      • +
    • Looking now, I see there is a “scope” parameter that can be used for community or collection, for example:
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https://cgspace.cgiar.org/open-search/discover?query=subject:water%20scarcity&scope=10568/16814&order=DESC&rpp=100&sort_by=2&start=1
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  • That will sort by date issued (see: webui.itemlist.sort-option.2 in dspace.cfg), give 100 results per page, and start on item 1
    • +
  • Otherwise, another alternative would be to use the IWMI CSV that we are already exporting every week
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  • Fill out the CGIAR-AGROVOC Task Group: Survey on the current CGIAR use of AGROVOC survey on behalf of CGSpace
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+ + + + + + + + + diff --git a/docs/404.html b/docs/404.html index 836a9cdd7..ec6388e03 100644 --- a/docs/404.html +++ b/docs/404.html @@ -95,6 +95,8 @@
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  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
    4. @@ -103,8 +105,6 @@
  4. CGSpace CG Core v2 Migration
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  5. February, 2021
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diff --git a/docs/categories/index.html b/docs/categories/index.html index 9e70c099f..93d629f2e 100644 --- a/docs/categories/index.html +++ b/docs/categories/index.html @@ -10,7 +10,7 @@ - + @@ -84,7 +84,7 @@

Notes

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by Alan Orth

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by Alan Orth

Read more → @@ -108,6 +108,8 @@
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  1. June, 2021
    2. +
  2. May, 2021
  3. April, 2021
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  4. CGSpace CG Core v2 Migration
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  5. February, 2021
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diff --git a/docs/categories/index.xml b/docs/categories/index.xml index 112e88429..1cd962d86 100644 --- a/docs/categories/index.xml +++ b/docs/categories/index.xml @@ -6,11 +6,11 @@ Recent content in Categories on CGSpace Notes Hugo -- gohugo.io en-us - Sun, 02 May 2021 09:50:54 +0300 + Tue, 01 Jun 2021 10:51:07 +0300 Notes https://alanorth.github.io/cgspace-notes/categories/notes/ - Sun, 02 May 2021 09:50:54 +0300 + Tue, 01 Jun 2021 10:51:07 +0300 https://alanorth.github.io/cgspace-notes/categories/notes/ diff --git a/docs/categories/notes/index.html b/docs/categories/notes/index.html index d2235ce94..c95bd40c0 100644 --- a/docs/categories/notes/index.html +++ b/docs/categories/notes/index.html @@ -10,7 +10,7 @@ - + @@ -81,6 +81,33 @@ +
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June, 2021

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by Alan Orth in + Notes + + +

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2021-06-01

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  • IWMI notified me that AReS was down with an HTTP 502 error +
      +
    • Looking at UptimeRobot I see it has been down for 33 hours, but I never got a notification
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    • I don’t see anything in the Elasticsearch container logs, or the systemd journal on the host, but I notice that the angular_nginx container isn’t running
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    • I simply started it and AReS was running again:
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+ Read more → +
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May, 2021

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October, 2020

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by Alan Orth in - Notes - - -

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2020-10-06

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  • Add tests for the new /items POST handlers to the DSpace 6.x branch of my dspace-statistics-api - -
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  • Trying to test the changes Atmire sent last week but I had to re-create my local database from a recent CGSpace dump -
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    • During the FlywayDB migration I got an error:
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