Add notes for 2019-06-02

2024-11-22 06:35:03 +01:00 · 2019-06-02 10:57:51 +03:00 · 2019-06-02 10:57:51 +03:00 · 4d797fe8fc
commit 4d797fe8fc
parent 57a5176a3f
78 changed files with 982 additions and 790 deletions
--- a/content/posts/2019-06.md
+++ b/content/posts/2019-06.md
@ -0,0 +1,15 @@
+---
+title: "May, 2019"
+date: 2019-05-06T10:30:43+03:00
+author: "Alan Orth"
+tags: ["Notes"]
+---
+
+## 2019-06-02
+
+- Merge the [Solr filterCache](https://github.com/ilri/DSpace/pull/425) and [XMLUI ISI journal](https://github.com/ilri/DSpace/pull/426) changes to the `5_x-prod` branch and deploy on CGSpace
+- Run system updates on CGSpace (linode18) and reboot it
+
+<!--more-->
+
+<!-- vim: set sw=2 ts=2: -->
--- a/docs/2015-11/index.html
+++ b/docs/2015-11/index.html
@ -282,12 +282,12 @@ db.statementpool = true

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2015-12/index.html
+++ b/docs/2015-12/index.html
@ -298,12 +298,12 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-01/index.html
+++ b/docs/2016-01/index.html
@ -214,12 +214,12 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} \; | so

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-02/index.html
+++ b/docs/2016-02/index.html
@ -459,12 +459,12 @@ Bitstream: tést señora alimentación.pdf

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-03/index.html
+++ b/docs/2016-03/index.html
@ -365,12 +365,12 @@ metadata_value_id | resource_id | metadata_field_id | text_value | text_lang | p

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-04/index.html
+++ b/docs/2016-04/index.html
@ -581,12 +581,12 @@ dspace.log.2016-04-27:7271

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-05/index.html
+++ b/docs/2016-05/index.html
@ -439,12 +439,12 @@ sys     0m20.540s

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-06/index.html
+++ b/docs/2016-06/index.html
@ -474,12 +474,12 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-07/index.html
+++ b/docs/2016-07/index.html
@ -385,12 +385,12 @@ discovery.index.authority.ignore-variants=true

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-08/index.html
+++ b/docs/2016-08/index.html
@ -464,12 +464,12 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-09/index.html
+++ b/docs/2016-09/index.html
@ -738,12 +738,12 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-10/index.html
+++ b/docs/2016-10/index.html
@ -443,12 +443,12 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-11/index.html
+++ b/docs/2016-11/index.html
@ -644,12 +644,12 @@ org.dspace.discovery.SearchServiceException: Error executing query

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2016-12/index.html
+++ b/docs/2016-12/index.html
@ -911,12 +911,12 @@ $ exit

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-01/index.html
+++ b/docs/2017-01/index.html
@ -436,12 +436,12 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-02/index.html
+++ b/docs/2017-02/index.html
@ -501,12 +501,12 @@ COPY 1968

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-03/index.html
+++ b/docs/2017-03/index.html
@ -438,12 +438,12 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-04/index.html
+++ b/docs/2017-04/index.html
@ -706,12 +706,12 @@ $ gem install compass -v 1.0.3

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-05/index.html
+++ b/docs/2017-05/index.html
@ -466,12 +466,12 @@ UPDATE 187

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-06/index.html
+++ b/docs/2017-06/index.html
@ -299,12 +299,12 @@ text_value

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-07/index.html
+++ b/docs/2017-07/index.html
@ -319,12 +319,12 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-08/index.html
+++ b/docs/2017-08/index.html
@ -615,12 +615,12 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-09/index.html
+++ b/docs/2017-09/index.html
@ -785,12 +785,12 @@ Cert Status: good

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-10/index.html
+++ b/docs/2017-10/index.html
@ -551,12 +551,12 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-11/index.html
+++ b/docs/2017-11/index.html
@ -1161,12 +1161,12 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2017-12/index.html
+++ b/docs/2017-12/index.html
@ -942,12 +942,12 @@ DELETE 20

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-01/index.html
+++ b/docs/2018-01/index.html
@ -1736,12 +1736,12 @@ Catalina:type=Manager,context=/,host=localhost  activeSessions  8

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-02/index.html
+++ b/docs/2018-02/index.html
@ -1290,12 +1290,12 @@ UPDATE 3

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-03/index.html
+++ b/docs/2018-03/index.html
@ -718,12 +718,12 @@ Fixed 5 occurences of: GENEBANKS

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-04/index.html
+++ b/docs/2018-04/index.html
@ -725,12 +725,12 @@ java.lang.NoSuchMethodError: java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-05/index.html
+++ b/docs/2018-05/index.html
@ -619,12 +619,12 @@ $ psql -h localhost -U postgres dspacetest

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-06/index.html
+++ b/docs/2018-06/index.html
@ -587,12 +587,12 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-07/index.html
+++ b/docs/2018-07/index.html
@ -678,12 +678,12 @@ count

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-08/index.html
+++ b/docs/2018-08/index.html
@ -551,12 +551,12 @@ $ dspace database migrate ignored

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-09/index.html
+++ b/docs/2018-09/index.html
@ -913,12 +913,12 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-10/index.html
+++ b/docs/2018-10/index.html
@ -800,12 +800,12 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-11/index.html
+++ b/docs/2018-11/index.html
@ -655,12 +655,12 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2018-12/index.html
+++ b/docs/2018-12/index.html
@ -688,12 +688,12 @@ UPDATE 1

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2019-01/index.html
+++ b/docs/2019-01/index.html
@ -1401,12 +1401,12 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2019-02/index.html
+++ b/docs/2019-02/index.html
@ -1592,12 +1592,12 @@ Please see the DSpace documentation for assistance.

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2019-03/index.html
+++ b/docs/2019-03/index.html
@ -1384,12 +1384,12 @@ sys     0m2.551s

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2019-04/index.html
+++ b/docs/2019-04/index.html
@ -1443,12 +1443,12 @@ UPDATE 14

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/2019-05/index.html
+++ b/docs/2019-05/index.html
@ -28,7 +28,7 @@ But after this I tried to delete the item from the XMLUI and it is still present
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-05/" />
 <meta property="article:published_time" content="2019-05-01T07:37:43&#43;03:00"/>
-<meta property="article:modified_time" content="2019-05-27T12:20:07&#43;03:00"/>
+<meta property="article:modified_time" content="2019-05-29T19:06:52&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="May, 2019"/>
@ -61,9 +61,9 @@ But after this I tried to delete the item from the XMLUI and it is still present
  "@type": "BlogPosting",
  "headline": "May, 2019",
  "url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-05\/",
-  "wordCount": "3138",
+  "wordCount": "3215",
  "datePublished": "2019-05-01T07:37:43\x2b03:00",
-  "dateModified": "2019-05-27T12:20:07\x2b03:00",
+  "dateModified": "2019-05-29T19:06:52\x2b03:00",
  "author": {
    "@type": "Person",
    "name": "Alan Orth"
@ -693,6 +693,20 @@ COPY 64871
 </ul></li>
 </ul>

+<h2 id="2019-05-30">2019-05-30</h2>
+
+<ul>
+<li><p>I see the following error in the DSpace log when the user tries to log in with her CGIAR email and password on the LDAP login:</p>
+
+<pre><code>2019-05-30 07:19:35,166 INFO  org.dspace.authenticate.LDAPAuthentication @ anonymous:session_id=A5E0C836AF8F3ABB769FE47107AE1CFF:ip_addr=185.71.4.34:failed_login:no DN found for user sa.saini@cgiar.org
+</code></pre></li>
+
+<li><p>For now I just created an eperson with her personal email address until I have time to check LDAP to see what&rsquo;s up with her CGIAR account:</p>
+
+<pre><code>$ dspace user -a -m blah@blah.com -g Sakshi -s Saini -p 'sknflksnfksnfdls'
+</code></pre></li>
+</ul>
+
 <!-- vim: set sw=2 ts=2: -->

  
@ -718,12 +732,12 @@ COPY 64871

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/404.html
+++ b/docs/404.html
@ -91,12 +91,12 @@

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/categories/index.html
+++ b/docs/categories/index.html
@ -89,6 +89,29 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
+    <p class="blog-post-meta"><time datetime="2019-05-06T10:30:43&#43;03:00">Mon May 06, 2019</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2019-06-02">2019-06-02</h2>
+
+<ul>
+<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
+<li>Run system updates on CGSpace (linode18) and reboot it</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
@ -399,45 +422,6 @@ sys     0m1.979s



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
-    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2018-08-01">2018-08-01</h2>
-
-<ul>
-<li><p>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</p>
-
-<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
-[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
-[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
-</code></pre></li>
-
-<li><p>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</p></li>
-
-<li><p>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</p></li>
-
-<li><p>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</p></li>
-
-<li><p>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</p></li>
-
-<li><p>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</p></li>
-
-<li><p>I ran all system updates on DSpace Test and rebooted it</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  
@ -466,12 +450,12 @@ sys     0m1.979s

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/categories/notes/index.html
+++ b/docs/categories/notes/index.html
@ -109,12 +109,12 @@

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/categories/page/2/index.html
+++ b/docs/categories/page/2/index.html
@ -89,6 +89,45 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2018-08-01">2018-08-01</h2>
+
+<ul>
+<li><p>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</p>
+
+<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+</code></pre></li>
+
+<li><p>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</p></li>
+
+<li><p>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</p></li>
+
+<li><p>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</p></li>
+
+<li><p>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</p></li>
+
+<li><p>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</p></li>
+
+<li><p>I ran all system updates on DSpace Test and rebooted it</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@ -415,35 +454,6 @@ COPY 54701



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-10-01">2017-10-01</h2>
-
-<ul>
-<li><p>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</p>
-
-<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
-</code></pre></li>
-
-<li><p>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</p></li>
-
-<li><p>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
@ -472,12 +482,12 @@ COPY 54701

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/categories/page/3/index.html
+++ b/docs/categories/page/3/index.html
@ -89,6 +89,35 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-10-01">2017-10-01</h2>
+
+<ul>
+<li><p>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</p>
+
+<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
+</code></pre></li>
+
+<li><p>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</p></li>
+
+<li><p>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
@ -352,30 +381,6 @@ DELETE 1



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-01-02">2017-01-02</h2>
-
-<ul>
-<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
-<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
-<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
@ -404,12 +409,12 @@ DELETE 1

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/categories/page/4/index.html
+++ b/docs/categories/page/4/index.html
@ -89,6 +89,30 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-01-02">2017-01-02</h2>
+
+<ul>
+<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
+<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
+<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
@ -360,30 +384,6 @@ text_value



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-03-02">2016-03-02</h2>
-
-<ul>
-<li>Looking at issues with author authorities on CGSpace</li>
-<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
-<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/3/" rel="prev" role="button">Previous page</a>
@ -412,12 +412,12 @@ text_value

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/categories/page/5/index.html
+++ b/docs/categories/page/5/index.html
@ -89,6 +89,30 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-03-02">2016-03-02</h2>
+
+<ul>
+<li>Looking at issues with author authorities on CGSpace</li>
+<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
+<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
@ -229,12 +253,12 @@

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/cgiar-library-migration/index.html
+++ b/docs/cgiar-library-migration/index.html
@ -329,12 +329,12 @@ dspace=# select setval('handle_seq',86873);

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/index.html
+++ b/docs/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,29 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
+    <p class="blog-post-meta"><time datetime="2019-05-06T10:30:43&#43;03:00">Mon May 06, 2019</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2019-06-02">2019-06-02</h2>
+
+<ul>
+<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
+<li>Run system updates on CGSpace (linode18) and reboot it</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
@ -399,45 +422,6 @@ sys     0m1.979s



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
-    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2018-08-01">2018-08-01</h2>
-
-<ul>
-<li><p>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</p>
-
-<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
-[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
-[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
-</code></pre></li>
-
-<li><p>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</p></li>
-
-<li><p>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</p></li>
-
-<li><p>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</p></li>
-
-<li><p>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</p></li>
-
-<li><p>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</p></li>
-
-<li><p>I ran all system updates on DSpace Test and rebooted it</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  
@ -466,12 +450,12 @@ sys     0m1.979s

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/index.xml
+++ b/docs/index.xml
@ -6,11 +6,25 @@
    <description>Recent content on CGSpace Notes</description>
    <generator>Hugo -- gohugo.io</generator>
    <language>en-us</language>
-    <lastBuildDate>Wed, 01 May 2019 07:37:43 +0300</lastBuildDate>
+    <lastBuildDate>Mon, 06 May 2019 10:30:43 +0300</lastBuildDate>
    
 	<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
    
    
+    <item>
+      <title>May, 2019</title>
+      <link>https://alanorth.github.io/cgspace-notes/2019-05/</link>
+      <pubDate>Mon, 06 May 2019 10:30:43 +0300</pubDate>
+      
+      <guid>https://alanorth.github.io/cgspace-notes/2019-05/</guid>
+      <description>&lt;h2 id=&#34;2019-06-02&#34;&gt;2019-06-02&lt;/h2&gt;
+
+&lt;ul&gt;
+&lt;li&gt;Merge the &lt;a href=&#34;https://github.com/ilri/DSpace/pull/425&#34;&gt;Solr filterCache&lt;/a&gt; and &lt;a href=&#34;https://github.com/ilri/DSpace/pull/426&#34;&gt;XMLUI ISI journal&lt;/a&gt; changes to the &lt;code&gt;5_x-prod&lt;/code&gt; branch and deploy on CGSpace&lt;/li&gt;
+&lt;li&gt;Run system updates on CGSpace (linode18) and reboot it&lt;/li&gt;
+&lt;/ul&gt;</description>
+    </item>
+    
    <item>
      <title>May, 2019</title>
      <link>https://alanorth.github.io/cgspace-notes/2019-05/</link>
--- a/docs/page/2/index.html
+++ b/docs/page/2/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,45 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2018-08-01">2018-08-01</h2>
+
+<ul>
+<li><p>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</p>
+
+<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+</code></pre></li>
+
+<li><p>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</p></li>
+
+<li><p>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</p></li>
+
+<li><p>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</p></li>
+
+<li><p>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</p></li>
+
+<li><p>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</p></li>
+
+<li><p>I ran all system updates on DSpace Test and rebooted it</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@ -415,35 +454,6 @@ COPY 54701



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-10-01">2017-10-01</h2>
-
-<ul>
-<li><p>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</p>
-
-<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
-</code></pre></li>
-
-<li><p>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</p></li>
-
-<li><p>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
@ -472,12 +482,12 @@ COPY 54701

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/page/3/index.html
+++ b/docs/page/3/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,35 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-10-01">2017-10-01</h2>
+
+<ul>
+<li><p>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</p>
+
+<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
+</code></pre></li>
+
+<li><p>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</p></li>
+
+<li><p>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
@ -352,30 +381,6 @@ DELETE 1



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-01-02">2017-01-02</h2>
-
-<ul>
-<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
-<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
-<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
@ -404,12 +409,12 @@ DELETE 1

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/page/4/index.html
+++ b/docs/page/4/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,30 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-01-02">2017-01-02</h2>
+
+<ul>
+<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
+<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
+<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
@ -360,30 +384,6 @@ text_value



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-03-02">2016-03-02</h2>
-
-<ul>
-<li>Looking at issues with author authorities on CGSpace</li>
-<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
-<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
@ -412,12 +412,12 @@ text_value

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/page/5/index.html
+++ b/docs/page/5/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,30 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-03-02">2016-03-02</h2>
+
+<ul>
+<li>Looking at issues with author authorities on CGSpace</li>
+<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
+<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
@ -229,12 +253,12 @@

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/posts/index.html
+++ b/docs/posts/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,29 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
+    <p class="blog-post-meta"><time datetime="2019-05-06T10:30:43&#43;03:00">Mon May 06, 2019</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2019-06-02">2019-06-02</h2>
+
+<ul>
+<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
+<li>Run system updates on CGSpace (linode18) and reboot it</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
@ -399,45 +422,6 @@ sys     0m1.979s



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
-    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2018-08-01">2018-08-01</h2>
-
-<ul>
-<li><p>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</p>
-
-<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
-[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
-[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
-</code></pre></li>
-
-<li><p>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</p></li>
-
-<li><p>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</p></li>
-
-<li><p>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</p></li>
-
-<li><p>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</p></li>
-
-<li><p>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</p></li>
-
-<li><p>I ran all system updates on DSpace Test and rebooted it</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  
@ -466,12 +450,12 @@ sys     0m1.979s

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/posts/index.xml
+++ b/docs/posts/index.xml
@ -6,11 +6,25 @@
    <description>Recent content in Posts on CGSpace Notes</description>
    <generator>Hugo -- gohugo.io</generator>
    <language>en-us</language>
-    <lastBuildDate>Wed, 01 May 2019 07:37:43 +0300</lastBuildDate>
+    <lastBuildDate>Mon, 06 May 2019 10:30:43 +0300</lastBuildDate>
    
 	<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
    
    
+    <item>
+      <title>May, 2019</title>
+      <link>https://alanorth.github.io/cgspace-notes/2019-05/</link>
+      <pubDate>Mon, 06 May 2019 10:30:43 +0300</pubDate>
+      
+      <guid>https://alanorth.github.io/cgspace-notes/2019-05/</guid>
+      <description>&lt;h2 id=&#34;2019-06-02&#34;&gt;2019-06-02&lt;/h2&gt;
+
+&lt;ul&gt;
+&lt;li&gt;Merge the &lt;a href=&#34;https://github.com/ilri/DSpace/pull/425&#34;&gt;Solr filterCache&lt;/a&gt; and &lt;a href=&#34;https://github.com/ilri/DSpace/pull/426&#34;&gt;XMLUI ISI journal&lt;/a&gt; changes to the &lt;code&gt;5_x-prod&lt;/code&gt; branch and deploy on CGSpace&lt;/li&gt;
+&lt;li&gt;Run system updates on CGSpace (linode18) and reboot it&lt;/li&gt;
+&lt;/ul&gt;</description>
+    </item>
+    
    <item>
      <title>May, 2019</title>
      <link>https://alanorth.github.io/cgspace-notes/2019-05/</link>
--- a/docs/posts/page/2/index.html
+++ b/docs/posts/page/2/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,45 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2018-08-01">2018-08-01</h2>
+
+<ul>
+<li><p>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</p>
+
+<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+</code></pre></li>
+
+<li><p>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</p></li>
+
+<li><p>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</p></li>
+
+<li><p>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</p></li>
+
+<li><p>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</p></li>
+
+<li><p>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</p></li>
+
+<li><p>I ran all system updates on DSpace Test and rebooted it</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@ -415,35 +454,6 @@ COPY 54701



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-10-01">2017-10-01</h2>
-
-<ul>
-<li><p>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</p>
-
-<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
-</code></pre></li>
-
-<li><p>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</p></li>
-
-<li><p>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -472,12 +482,12 @@ COPY 54701

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/posts/page/3/index.html
+++ b/docs/posts/page/3/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,35 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-10-01">2017-10-01</h2>
+
+<ul>
+<li><p>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</p>
+
+<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
+</code></pre></li>
+
+<li><p>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</p></li>
+
+<li><p>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
@ -352,30 +381,6 @@ DELETE 1



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-01-02">2017-01-02</h2>
-
-<ul>
-<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
-<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
-<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -404,12 +409,12 @@ DELETE 1

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/posts/page/4/index.html
+++ b/docs/posts/page/4/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,30 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-01-02">2017-01-02</h2>
+
+<ul>
+<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
+<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
+<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
@ -360,30 +384,6 @@ text_value



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-03-02">2016-03-02</h2>
-
-<ul>
-<li>Looking at issues with author authorities on CGSpace</li>
-<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
-<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
@ -412,12 +412,12 @@ text_value

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/posts/page/5/index.html
+++ b/docs/posts/page/5/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,30 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-03-02">2016-03-02</h2>
+
+<ul>
+<li>Looking at issues with author authorities on CGSpace</li>
+<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
+<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
@ -229,12 +253,12 @@

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/robots.txt
+++ b/docs/robots.txt
@ -6,6 +6,7 @@ Disallow: /cgspace-notes/2019-05/
 Disallow: /cgspace-notes/tags/notes/
 Disallow: /cgspace-notes/posts/
 Disallow: /cgspace-notes/tags/
+Disallow: /cgspace-notes/2019-05/
 Disallow: /cgspace-notes/2019-04/
 Disallow: /cgspace-notes/2019-03/
 Disallow: /cgspace-notes/2019-02/
--- a/docs/sitemap.xml
+++ b/docs/sitemap.xml
@ -4,33 +4,38 @@
  
  <url>
    <loc>https://alanorth.github.io/cgspace-notes/</loc>
-    <lastmod>2019-05-27T12:20:07+03:00</lastmod>
+    <lastmod>2019-05-29T19:06:52+03:00</lastmod>
    <priority>0</priority>
  </url>
  
  <url>
    <loc>https://alanorth.github.io/cgspace-notes/2019-05/</loc>
-    <lastmod>2019-05-27T12:20:07+03:00</lastmod>
+    <lastmod>2019-05-06T10:30:43+03:00</lastmod>
  </url>
  
  <url>
    <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
-    <lastmod>2019-05-27T12:20:07+03:00</lastmod>
+    <lastmod>2019-05-29T19:06:52+03:00</lastmod>
    <priority>0</priority>
  </url>
  
  <url>
    <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
-    <lastmod>2019-05-27T12:20:07+03:00</lastmod>
+    <lastmod>2019-05-29T19:06:52+03:00</lastmod>
    <priority>0</priority>
  </url>
  
  <url>
    <loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
-    <lastmod>2019-05-27T12:20:07+03:00</lastmod>
+    <lastmod>2019-05-29T19:06:52+03:00</lastmod>
    <priority>0</priority>
  </url>
  
+  <url>
+    <loc>https://alanorth.github.io/cgspace-notes/2019-05/</loc>
+    <lastmod>2019-05-29T19:06:52+03:00</lastmod>
+  </url>
+  
  <url>
    <loc>https://alanorth.github.io/cgspace-notes/2019-04/</loc>
    <lastmod>2019-05-27T12:04:14+03:00</lastmod>
--- a/docs/tags/index.html
+++ b/docs/tags/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,29 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
+    <p class="blog-post-meta"><time datetime="2019-05-06T10:30:43&#43;03:00">Mon May 06, 2019</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2019-06-02">2019-06-02</h2>
+
+<ul>
+<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
+<li>Run system updates on CGSpace (linode18) and reboot it</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
@ -399,45 +422,6 @@ sys     0m1.979s



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
-    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2018-08-01">2018-08-01</h2>
-
-<ul>
-<li><p>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</p>
-
-<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
-[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
-[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
-</code></pre></li>
-
-<li><p>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</p></li>
-
-<li><p>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</p></li>
-
-<li><p>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</p></li>
-
-<li><p>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</p></li>
-
-<li><p>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</p></li>
-
-<li><p>I ran all system updates on DSpace Test and rebooted it</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  
@ -466,12 +450,12 @@ sys     0m1.979s

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/tags/index.xml
+++ b/docs/tags/index.xml
@ -6,7 +6,7 @@
    <description>Recent content in Tags on CGSpace Notes</description>
    <generator>Hugo -- gohugo.io</generator>
    <language>en-us</language>
-    <lastBuildDate>Wed, 01 May 2019 07:37:43 +0300</lastBuildDate>
+    <lastBuildDate>Mon, 06 May 2019 10:30:43 +0300</lastBuildDate>
    
 	<atom:link href="https://alanorth.github.io/cgspace-notes/tags/index.xml" rel="self" type="application/rss+xml" />
    
@ -14,7 +14,7 @@
    <item>
      <title>Notes</title>
      <link>https://alanorth.github.io/cgspace-notes/tags/notes/</link>
-      <pubDate>Wed, 01 May 2019 07:37:43 +0300</pubDate>
+      <pubDate>Mon, 06 May 2019 10:30:43 +0300</pubDate>
      
      <guid>https://alanorth.github.io/cgspace-notes/tags/notes/</guid>
      <description></description>
--- a/docs/tags/notes/index.html
+++ b/docs/tags/notes/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
@ -74,6 +74,29 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
+    <p class="blog-post-meta"><time datetime="2019-05-06T10:30:43&#43;03:00">Mon May 06, 2019</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2019-06-02">2019-06-02</h2>
+
+<ul>
+<li>Merge the <a href="https://github.com/ilri/DSpace/pull/425">Solr filterCache</a> and <a href="https://github.com/ilri/DSpace/pull/426">XMLUI ISI journal</a> changes to the <code>5_x-prod</code> branch and deploy on CGSpace</li>
+<li>Run system updates on CGSpace (linode18) and reboot it</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
@ -384,45 +407,6 @@ sys     0m1.979s



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
-    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2018-08-01">2018-08-01</h2>
-
-<ul>
-<li><p>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</p>
-
-<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
-[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
-[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
-</code></pre></li>
-
-<li><p>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</p></li>
-
-<li><p>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</p></li>
-
-<li><p>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</p></li>
-
-<li><p>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</p></li>
-
-<li><p>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</p></li>
-
-<li><p>I ran all system updates on DSpace Test and rebooted it</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  
@ -451,12 +435,12 @@ sys     0m1.979s

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/tags/notes/index.xml
+++ b/docs/tags/notes/index.xml
@ -6,11 +6,25 @@
    <description>Recent content in Notes on CGSpace Notes</description>
    <generator>Hugo -- gohugo.io</generator>
    <language>en-us</language>
-    <lastBuildDate>Wed, 01 May 2019 07:37:43 +0300</lastBuildDate>
+    <lastBuildDate>Mon, 06 May 2019 10:30:43 +0300</lastBuildDate>
    
 	<atom:link href="https://alanorth.github.io/cgspace-notes/tags/notes/index.xml" rel="self" type="application/rss+xml" />
    
    
+    <item>
+      <title>May, 2019</title>
+      <link>https://alanorth.github.io/cgspace-notes/2019-05/</link>
+      <pubDate>Mon, 06 May 2019 10:30:43 +0300</pubDate>
+      
+      <guid>https://alanorth.github.io/cgspace-notes/2019-05/</guid>
+      <description>&lt;h2 id=&#34;2019-06-02&#34;&gt;2019-06-02&lt;/h2&gt;
+
+&lt;ul&gt;
+&lt;li&gt;Merge the &lt;a href=&#34;https://github.com/ilri/DSpace/pull/425&#34;&gt;Solr filterCache&lt;/a&gt; and &lt;a href=&#34;https://github.com/ilri/DSpace/pull/426&#34;&gt;XMLUI ISI journal&lt;/a&gt; changes to the &lt;code&gt;5_x-prod&lt;/code&gt; branch and deploy on CGSpace&lt;/li&gt;
+&lt;li&gt;Run system updates on CGSpace (linode18) and reboot it&lt;/li&gt;
+&lt;/ul&gt;</description>
+    </item>
+    
    <item>
      <title>May, 2019</title>
      <link>https://alanorth.github.io/cgspace-notes/2019-05/</link>
--- a/docs/tags/notes/page/2/index.html
+++ b/docs/tags/notes/page/2/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
@ -74,6 +74,45 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2018-08-01">2018-08-01</h2>
+
+<ul>
+<li><p>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</p>
+
+<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+</code></pre></li>
+
+<li><p>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</p></li>
+
+<li><p>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</p></li>
+
+<li><p>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</p></li>
+
+<li><p>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</p></li>
+
+<li><p>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</p></li>
+
+<li><p>I ran all system updates on DSpace Test and rebooted it</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@ -400,35 +439,6 @@ COPY 54701



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-10-01">2017-10-01</h2>
-
-<ul>
-<li><p>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</p>
-
-<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
-</code></pre></li>
-
-<li><p>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</p></li>
-
-<li><p>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/" rel="prev" role="button">Previous page</a>
@ -457,12 +467,12 @@ COPY 54701

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/tags/notes/page/3/index.html
+++ b/docs/tags/notes/page/3/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
@ -74,6 +74,35 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-10-01">2017-10-01</h2>
+
+<ul>
+<li><p>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</p>
+
+<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
+</code></pre></li>
+
+<li><p>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</p></li>
+
+<li><p>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
@ -343,43 +372,6 @@ DELETE 1



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-12-02T10:43:00&#43;03:00">Fri Dec 02, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-12-02">2016-12-02</h2>
-
-<ul>
-<li>CGSpace was down for five hours in the morning while I was sleeping</li>
-
-<li><p>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</p>
-
-<pre><code>2016-12-02 03:00:32,352 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
-2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&quot;dc.title&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
-2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&quot;THUMBNAIL&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
-2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&quot;-1&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
-2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
-</code></pre></li>
-
-<li><p>I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade</p></li>
-
-<li><p>I&rsquo;ve raised a ticket with Atmire to ask</p></li>
-
-<li><p>Another worrying error from dspace.log is:</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/2/" rel="prev" role="button">Previous page</a>
@ -408,12 +400,12 @@ DELETE 1

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/tags/notes/page/4/index.html
+++ b/docs/tags/notes/page/4/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
@ -74,6 +74,43 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-12-02T10:43:00&#43;03:00">Fri Dec 02, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-12-02">2016-12-02</h2>
+
+<ul>
+<li>CGSpace was down for five hours in the morning while I was sleeping</li>
+
+<li><p>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</p>
+
+<pre><code>2016-12-02 03:00:32,352 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
+2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&quot;dc.title&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
+2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&quot;THUMBNAIL&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
+2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&quot;-1&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
+2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
+</code></pre></li>
+
+<li><p>I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade</p></li>
+
+<li><p>I&rsquo;ve raised a ticket with Atmire to ask</p></li>
+
+<li><p>Another worrying error from dspace.log is:</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
@ -332,37 +369,6 @@ text_value



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-02-05T13:18:00&#43;03:00">Fri Feb 05, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-02-05">2016-02-05</h2>
-
-<ul>
-<li>Looking at some DAGRIS data for Abenet Yabowork</li>
-<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
-<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
-</ul>
-
-<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
-
-<ul>
-<li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li>
-<li>Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;</li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/3/" rel="prev" role="button">Previous page</a>
@ -391,12 +397,12 @@ text_value

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/tags/notes/page/5/index.html
+++ b/docs/tags/notes/page/5/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Notes"/>
@ -74,6 +74,37 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-02-05T13:18:00&#43;03:00">Fri Feb 05, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-02-05">2016-02-05</h2>
+
+<ul>
+<li>Looking at some DAGRIS data for Abenet Yabowork</li>
+<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
+<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
+</ul>
+
+<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list" /></p>
+
+<ul>
+<li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li>
+<li>Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
@ -183,12 +214,12 @@

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/tags/page/2/index.html
+++ b/docs/tags/page/2/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,45 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-08/">August, 2018</a></h2>
+    <p class="blog-post-meta"><time datetime="2018-08-01T11:52:54&#43;03:00">Wed Aug 01, 2018</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2018-08-01">2018-08-01</h2>
+
+<ul>
+<li><p>DSpace Test had crashed at some point yesterday morning and I see the following in <code>dmesg</code>:</p>
+
+<pre><code>[Tue Jul 31 00:00:41 2018] Out of memory: Kill process 1394 (java) score 668 or sacrifice child
+[Tue Jul 31 00:00:41 2018] Killed process 1394 (java) total-vm:15601860kB, anon-rss:5355528kB, file-rss:0kB, shmem-rss:0kB
+[Tue Jul 31 00:00:41 2018] oom_reaper: reaped process 1394 (java), now anon-rss:0kB, file-rss:0kB, shmem-rss:0kB
+</code></pre></li>
+
+<li><p>Judging from the time of the crash it was probably related to the Discovery indexing that starts at midnight</p></li>
+
+<li><p>From the DSpace log I see that eventually Solr stopped responding, so I guess the <code>java</code> process that was OOM killed above was Tomcat&rsquo;s</p></li>
+
+<li><p>I&rsquo;m not sure why Tomcat didn&rsquo;t crash with an OutOfMemoryError&hellip;</p></li>
+
+<li><p>Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did a few months ago when we tried to run the whole CGSpace Solr core</p></li>
+
+<li><p>The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes</p></li>
+
+<li><p>I ran all system updates on DSpace Test and rebooted it</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2018-08/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
@ -415,35 +454,6 @@ COPY 54701



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-10-01">2017-10-01</h2>
-
-<ul>
-<li><p>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</p>
-
-<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
-</code></pre></li>
-
-<li><p>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</p></li>
-
-<li><p>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</p></li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
@ -472,12 +482,12 @@ COPY 54701

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/tags/page/3/index.html
+++ b/docs/tags/page/3/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,35 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-10-01">2017-10-01</h2>
+
+<ul>
+<li><p>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</p>
+
+<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
+</code></pre></li>
+
+<li><p>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</p></li>
+
+<li><p>Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections</p></li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-10/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
@ -352,30 +381,6 @@ DELETE 1



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
-    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2017-01-02">2017-01-02</h2>
-
-<ul>
-<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
-<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
-<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
@ -404,12 +409,12 @@ DELETE 1

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/tags/page/4/index.html
+++ b/docs/tags/page/4/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,30 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
+    <p class="blog-post-meta"><time datetime="2017-01-02T10:43:00&#43;03:00">Mon Jan 02, 2017</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2017-01-02">2017-01-02</h2>
+
+<ul>
+<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
+<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
+<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
@ -360,30 +384,6 @@ text_value



-
-<article class="blog-post">
-  <header>
-    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
-    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
-
-<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
-
-</p>
-  </header>
-  <h2 id="2016-03-02">2016-03-02</h2>
-
-<ul>
-<li>Looking at issues with author authorities on CGSpace</li>
-<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
-<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
-</ul>
-  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
-</article> 
-
-
-
-
-
 <nav class="blog-pagination">
  
  <a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/3/" rel="prev" role="button">Previous page</a>
@ -412,12 +412,12 @@ text_value

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>

--- a/docs/tags/page/5/index.html
+++ b/docs/tags/page/5/index.html
@ -10,7 +10,7 @@
 <meta property="og:type" content="website" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />

-<meta property="og:updated_time" content="2019-05-01T07:37:43&#43;03:00"/>
+<meta property="og:updated_time" content="2019-05-06T10:30:43&#43;03:00"/>

 <meta name="twitter:card" content="summary"/>
 <meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
    "@type": "Person",
    "name": "Alan Orth"
  },
-  "dateModified": "2019-05-01T07:37:43\x2b03:00",
+  "dateModified": "2019-05-06T10:30:43\x2b03:00",
  "keywords": "notes,notes,",
  "description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
 }
@ -89,6 +89,30 @@



+<article class="blog-post">
+  <header>
+    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
+    <p class="blog-post-meta"><time datetime="2016-03-02T16:50:00&#43;03:00">Wed Mar 02, 2016</time> by Alan Orth in 
+
+<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
+
+</p>
+  </header>
+  <h2 id="2016-03-02">2016-03-02</h2>
+
+<ul>
+<li>Looking at issues with author authorities on CGSpace</li>
+<li>For some reason we still have the <code>index-lucene-update</code> cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module</li>
+<li>Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server</li>
+</ul>
+  <a href='https://alanorth.github.io/cgspace-notes/2016-03/'>Read more →</a>
+</article> 
+
+
+
+
+
+
 <article class="blog-post">
  <header>
    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
@ -229,12 +253,12 @@

 <li><a href="/cgspace-notes/posts/">Posts</a></li>

+<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
+
 <li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>

 <li><a href="/cgspace-notes/2019-03/">March, 2019</a></li>

-<li><a href="/cgspace-notes/2019-02/">February, 2019</a></li>
-
    </ol>
  </section>