alanorth/cgspace-notes
1
0
Fork 0
mirror of https://github.com/alanorth/cgspace-notes.git synced 2025-01-27 05:49:12 +01:00
Code Issues Projects Releases Wiki Activity

Add notes for 2022-07-03

Browse Source
This commit is contained in:
Alan Orth
2022-07-04 09:25:14 +03:00
parent 05cf7a26ec
commit 4d4bde3474
124 changed files with 1474 additions and 919 deletions
Download Patch File Download Diff File Expand all files Collapse all files

67
docs/posts/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-06-30T09:41:54+03:00" />
<meta property="og:updated_time" content="2022-07-02T14:07:36+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2022-06-06T09:01:36+03:00",
"dateModified": "2022-07-02T14:07:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,32 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-07/">July, 2022</a></h2>
<p class="blog-post-meta"><time datetime="2022-07-02T14:07:36+03:00">Sat Jul 02, 2022</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2022-07-02">2022-07-02</h2>
<ul>
<li>I learned how to use the Levenshtein functions in PostgreSQL
<ul>
<li>The thing is that there is a limit of 255 characters for these functions in PostgreSQL so you need to truncate the strings before comparing</li>
<li>Also, the trgm functions I&rsquo;ve used before are case insensitive, but Levenshtein is not, so you need to make sure to lower case both strings first</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2022-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2022-06/">June, 2022</a></h2>
@ -349,39 +375,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-09/">September, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-09-01T09:14:07+03:00">Wed Sep 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-09-02">2021-09-02</h2>
<ul>
<li>Troubleshooting the missing Altmetric scores on AReS
<ul>
<li>Turns out that I didn&rsquo;t actually fix them last month because the check for <code>content.altmetric</code> still exists, and I can&rsquo;t access the DOIs using <code>_h.source.DOI</code> for some reason</li>
<li>I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!</li>
<li>I will change <code>DOI</code> to <code>tomato</code> in the repository setup and start a re-harvest&hellip; I need to see if this is some kind of reserved word or something&hellip;</li>
<li>Even as <code>tomato</code> I can&rsquo;t access that field as <code>_h.source.tomato</code> in Angular, but it does work as a filter source&hellip; sigh</li>
</ul>
</li>
<li>I&rsquo;m having problems using the OpenRXV API
<ul>
<li>The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search query properly&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-09/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -406,6 +399,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
<li><a href="/cgspace-notes/2022-05/">May, 2022</a></li>
@ -414,8 +409,6 @@
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
<li><a href="/cgspace-notes/2022-02/">February, 2022</a></li>
</ol>
</section>

19
docs/posts/index.xml
View File

@ -6,7 +6,24 @@
<description>Recent content in Posts on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Mon, 06 Jun 2022 09:01:36 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<lastBuildDate>Sat, 02 Jul 2022 14:07:36 +0300</lastBuildDate><atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>July, 2022</title>
<link>https://alanorth.github.io/cgspace-notes/2022-07/</link>
<pubDate>Sat, 02 Jul 2022 14:07:36 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2022-07/</guid>
<description>&lt;h2 id=&#34;2022-07-02&#34;&gt;2022-07-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I learned how to use the Levenshtein functions in PostgreSQL
&lt;ul&gt;
&lt;li&gt;The thing is that there is a limit of 255 characters for these functions in PostgreSQL so you need to truncate the strings before comparing&lt;/li&gt;
&lt;li&gt;Also, the trgm functions I&amp;rsquo;ve used before are case insensitive, but Levenshtein is not, so you need to make sure to lower case both strings first&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>June, 2022</title>
<link>https://alanorth.github.io/cgspace-notes/2022-06/</link>

68
docs/posts/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-06-30T09:41:54+03:00" />
<meta property="og:updated_time" content="2022-07-02T14:07:36+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2022-06-06T09:01:36+03:00",
"dateModified": "2022-07-02T14:07:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,39 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-09/">September, 2021</a></h2>
<p class="blog-post-meta"><time datetime="2021-09-01T09:14:07+03:00">Wed Sep 01, 2021</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2021-09-02">2021-09-02</h2>
<ul>
<li>Troubleshooting the missing Altmetric scores on AReS
<ul>
<li>Turns out that I didn&rsquo;t actually fix them last month because the check for <code>content.altmetric</code> still exists, and I can&rsquo;t access the DOIs using <code>_h.source.DOI</code> for some reason</li>
<li>I can access all other kinds of item metadata using the Elasticsearch label, but not DOI!!!</li>
<li>I will change <code>DOI</code> to <code>tomato</code> in the repository setup and start a re-harvest&hellip; I need to see if this is some kind of reserved word or something&hellip;</li>
<li>Even as <code>tomato</code> I can&rsquo;t access that field as <code>_h.source.tomato</code> in Angular, but it does work as a filter source&hellip; sigh</li>
</ul>
</li>
<li>I&rsquo;m having problems using the OpenRXV API
<ul>
<li>The syntax Moayad showed me last month doesn&rsquo;t seem to honor the search query properly&hellip;</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2021-09/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2021-08/">August, 2021</a></h2>
@ -349,33 +382,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-12-01T11:32:54+02:00">Tue Dec 01, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-12-01">2020-12-01</h2>
<ul>
<li>Atmire responded about the issue with duplicate data in our Solr statistics
<ul>
<li>They noticed that some records in the statistics-2015 core haven&rsquo;t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven&rsquo;t migrated any of the records yet</li>
<li>That&rsquo;s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the <code>cua_version</code> field</li>
<li>I started processing those (about 411,000 records):</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-12/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -400,6 +406,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
<li><a href="/cgspace-notes/2022-05/">May, 2022</a></li>
@ -408,8 +416,6 @@
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
<li><a href="/cgspace-notes/2022-02/">February, 2022</a></li>
</ol>
</section>

65
docs/posts/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-06-30T09:41:54+03:00" />
<meta property="og:updated_time" content="2022-07-02T14:07:36+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2022-06-06T09:01:36+03:00",
"dateModified": "2022-07-02T14:07:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-12/">December, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-12-01T11:32:54+02:00">Tue Dec 01, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-12-01">2020-12-01</h2>
<ul>
<li>Atmire responded about the issue with duplicate data in our Solr statistics
<ul>
<li>They noticed that some records in the statistics-2015 core haven&rsquo;t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven&rsquo;t migrated any of the records yet</li>
<li>That&rsquo;s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the <code>cua_version</code> field</li>
<li>I started processing those (about 411,000 records):</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgspace-dspace6-upgrade/">CGSpace DSpace 6 Upgrade</a></h2>
@ -345,36 +372,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-03-02T12:31:30+02:00">Mon Mar 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-03-02">2020-03-02</h2>
<ul>
<li>Update <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> for DSpace 6+ UUIDs
<ul>
<li>Tag version 1.2.0 on GitHub</li>
</ul>
</li>
<li>Test migrating legacy Solr statistics to UUIDs with the as-of-yet unreleased <a href="https://github.com/DSpace/DSpace/commit/184f2b2153479045fba6239342c63e7f8564b8b6#diff-0350ce2e13b28d5d61252b7a8f50a059">SolrUpgradePre6xStatistics.java</a>
<ul>
<li>You need to download this into the DSpace 6.x source and compile it</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-03/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -399,6 +396,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
<li><a href="/cgspace-notes/2022-05/">May, 2022</a></li>
@ -407,8 +406,6 @@
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
<li><a href="/cgspace-notes/2022-02/">February, 2022</a></li>
</ol>
</section>

71
docs/posts/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-06-30T09:41:54+03:00" />
<meta property="og:updated_time" content="2022-07-02T14:07:36+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2022-06-06T09:01:36+03:00",
"dateModified": "2022-07-02T14:07:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,36 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-03/">March, 2020</a></h2>
<p class="blog-post-meta"><time datetime="2020-03-02T12:31:30+02:00">Mon Mar 02, 2020</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2020-03-02">2020-03-02</h2>
<ul>
<li>Update <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a> for DSpace 6+ UUIDs
<ul>
<li>Tag version 1.2.0 on GitHub</li>
</ul>
</li>
<li>Test migrating legacy Solr statistics to UUIDs with the as-of-yet unreleased <a href="https://github.com/DSpace/DSpace/commit/184f2b2153479045fba6239342c63e7f8564b8b6#diff-0350ce2e13b28d5d61252b7a8f50a059">SolrUpgradePre6xStatistics.java</a>
<ul>
<li>You need to download this into the DSpace 6.x source and compile it</li>
</ul>
</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2020-03/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2020-02/">February, 2020</a></h2>
@ -379,39 +409,6 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-05-01T07:37:43+03:00">Wed May 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-05-01">2019-05-01</h2>
<ul>
<li>Help CCAFS with regenerating some item thumbnails after they uploaded new PDFs to some items on CGSpace</li>
<li>A user on the dspace-tech mailing list offered some suggestions for troubleshooting the problem with the inability to delete certain items
<ul>
<li>Apparently if the item is in the <code>workflowitem</code> table it is submitted to a workflow</li>
<li>And if it is in the <code>workspaceitem</code> table it is in the pre-submitted state</li>
</ul>
</li>
<li>The item seems to be in a pre-submitted state, so I tried to delete it from there:</li>
</ul>
<pre tabindex="0"><code>dspace=# DELETE FROM workspaceitem WHERE item_id=74648;
DELETE 1
</code></pre><ul>
<li>But after this I tried to delete the item from the XMLUI and it is <em>still</em> present&hellip;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
@ -436,6 +433,8 @@ DELETE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
<li><a href="/cgspace-notes/2022-05/">May, 2022</a></li>
@ -444,8 +443,6 @@ DELETE 1
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
<li><a href="/cgspace-notes/2022-02/">February, 2022</a></li>
</ol>
</section>

68
docs/posts/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-06-30T09:41:54+03:00" />
<meta property="og:updated_time" content="2022-07-02T14:07:36+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2022-06-06T09:01:36+03:00",
"dateModified": "2022-07-02T14:07:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,39 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-05/">May, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-05-01T07:37:43+03:00">Wed May 01, 2019</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2019-05-01">2019-05-01</h2>
<ul>
<li>Help CCAFS with regenerating some item thumbnails after they uploaded new PDFs to some items on CGSpace</li>
<li>A user on the dspace-tech mailing list offered some suggestions for troubleshooting the problem with the inability to delete certain items
<ul>
<li>Apparently if the item is in the <code>workflowitem</code> table it is submitted to a workflow</li>
<li>And if it is in the <code>workspaceitem</code> table it is in the pre-submitted state</li>
</ul>
</li>
<li>The item seems to be in a pre-submitted state, so I tried to delete it from there:</li>
</ul>
<pre tabindex="0"><code>dspace=# DELETE FROM workspaceitem WHERE item_id=74648;
DELETE 1
</code></pre><ul>
<li>But after this I tried to delete the item from the XMLUI and it is <em>still</em> present&hellip;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2019-04/">April, 2019</a></h2>
@ -379,33 +412,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-07-01">2018-07-01</h2>
<ul>
<li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
</ul>
<pre tabindex="0"><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre><ul>
<li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul>
<pre tabindex="0"><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/4/" rel="prev" role="button">Previous page</a>
@ -430,6 +436,8 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
<li><a href="/cgspace-notes/2022-05/">May, 2022</a></li>
@ -438,8 +446,6 @@ sys 0m1.979s
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
<li><a href="/cgspace-notes/2022-02/">February, 2022</a></li>
</ol>
</section>

55
docs/posts/page/6/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-06-30T09:41:54+03:00" />
<meta property="og:updated_time" content="2022-07-02T14:07:36+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2022-06-06T09:01:36+03:00",
"dateModified": "2022-07-02T14:07:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,33 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54+03:00">Sun Jul 01, 2018</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
</p>
</header>
<h2 id="2018-07-01">2018-07-01</h2>
<ul>
<li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
</ul>
<pre tabindex="0"><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre><ul>
<li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul>
<pre tabindex="0"><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
@ -395,26 +422,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/5/" rel="prev" role="button">Previous page</a>
@ -439,6 +446,8 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
<li><a href="/cgspace-notes/2022-05/">May, 2022</a></li>
@ -447,8 +456,6 @@ COPY 54701
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
<li><a href="/cgspace-notes/2022-02/">February, 2022</a></li>
</ol>
</section>

60
docs/posts/page/7/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-06-30T09:41:54+03:00" />
<meta property="og:updated_time" content="2022-07-02T14:07:36+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2022-06-06T09:01:36+03:00",
"dateModified": "2022-07-02T14:07:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,26 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></h2>
<p class="blog-post-meta"><time datetime="2017-09-18T16:38:35+03:00">Mon Sep 18, 2017</time> by Alan Orth in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/migration/" rel="tag">Migration</a>
</p>
</header>
<p>Rough notes for importing the CGIAR Library content. It was decided that this content would go to a new top-level community called <em>CGIAR System Organization</em>.</p>
<a href='https://alanorth.github.io/cgspace-notes/cgiar-library-migration/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2017-09/">September, 2017</a></h2>
@ -344,38 +364,6 @@ DELETE 1
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-12-02">2016-12-02</h2>
<ul>
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
</ul>
<pre tabindex="0"><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&#34;TX157907838689377964651674089851855413607&#34;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&#34;dc.title&#34;, transactionID=&#34;TX157907838689377964651674089851855413607&#34;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&#34;THUMBNAIL&#34;, transactionID=&#34;TX157907838689377964651674089851855413607&#34;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&#34;-1&#34;, transactionID=&#34;TX157907838689377964651674089851855413607&#34;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&#34;TX157907838689377964651674089851855413607&#34;)
</code></pre><ul>
<li>I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade</li>
<li>I&rsquo;ve raised a ticket with Atmire to ask</li>
<li>Another worrying error from dspace.log is:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/6/" rel="prev" role="button">Previous page</a>
@ -400,6 +388,8 @@ DELETE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
<li><a href="/cgspace-notes/2022-05/">May, 2022</a></li>
@ -408,8 +398,6 @@ DELETE 1
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
<li><a href="/cgspace-notes/2022-02/">February, 2022</a></li>
</ol>
</section>

68
docs/posts/page/8/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-06-30T09:41:54+03:00" />
<meta property="og:updated_time" content="2022-07-02T14:07:36+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2022-06-06T09:01:36+03:00",
"dateModified": "2022-07-02T14:07:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,38 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-12/">December, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-12-02T10:43:00+03:00">Fri Dec 02, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-12-02">2016-12-02</h2>
<ul>
<li>CGSpace was down for five hours in the morning while I was sleeping</li>
<li>While looking in the logs for errors, I see tons of warnings about Atmire MQM:</li>
</ul>
<pre tabindex="0"><code>2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&#34;TX157907838689377964651674089851855413607&#34;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&#34;dc.title&#34;, transactionID=&#34;TX157907838689377964651674089851855413607&#34;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&#34;THUMBNAIL&#34;, transactionID=&#34;TX157907838689377964651674089851855413607&#34;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&#34;-1&#34;, transactionID=&#34;TX157907838689377964651674089851855413607&#34;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&#34;TX157907838689377964651674089851855413607&#34;)
</code></pre><ul>
<li>I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade</li>
<li>I&rsquo;ve raised a ticket with Atmire to ask</li>
<li>Another worrying error from dspace.log is:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-11/">November, 2016</a></h2>
@ -334,34 +366,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-02-05">2016-02-05</h2>
<ul>
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
</ul>
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list"></p>
<ul>
<li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li>
<li>Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/7/" rel="prev" role="button">Previous page</a>
@ -386,6 +390,8 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
<li><a href="/cgspace-notes/2022-05/">May, 2022</a></li>
@ -394,8 +400,6 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
<li><a href="/cgspace-notes/2022-02/">February, 2022</a></li>
</ol>
</section>

36
docs/posts/page/9/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2022-06-30T09:41:54+03:00" />
<meta property="og:updated_time" content="2022-07-02T14:07:36+03:00" />
@ -31,7 +31,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2022-06-06T09:01:36+03:00",
"dateModified": "2022-07-02T14:07:36+03:00",
"keywords": "notes, migration, notes",
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
@ -96,6 +96,34 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-02/">February, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-02-05T13:18:00+03:00">Fri Feb 05, 2016</time> by Alan Orth in
<span class="fas fa-tag" aria-hidden="true"></span>&nbsp;<a href="/tags/notes/" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-02-05">2016-02-05</h2>
<ul>
<li>Looking at some DAGRIS data for Abenet Yabowork</li>
<li>Lots of issues with spaces, newlines, etc causing the import to fail</li>
<li>I noticed we have a very <em>interesting</em> list of countries on CGSpace:</li>
</ul>
<p><img src="/cgspace-notes/2016/02/cgspace-countries.png" alt="CGSpace country list"></p>
<ul>
<li>Not only are there 49,000 countries, we have some blanks (25)&hellip;</li>
<li>Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2016-01/">January, 2016</a></h2>
@ -195,6 +223,8 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2022-07/">July, 2022</a></li>
<li><a href="/cgspace-notes/2022-06/">June, 2022</a></li>
<li><a href="/cgspace-notes/2022-05/">May, 2022</a></li>
@ -203,8 +233,6 @@
<li><a href="/cgspace-notes/2022-03/">March, 2022</a></li>
<li><a href="/cgspace-notes/2022-02/">February, 2022</a></li>
</ol>
</section>