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Add notes for 2021-10-10

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Alan Orth
2021-10-10 16:01:27 +03:00
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@ -25,7 +25,7 @@ So we have 1879/7100 (26.46%) matching already
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-10/" />
<meta property="article:published_time" content="2021-10-01T11:14:07+03:00" />
<meta property="article:modified_time" content="2021-10-08T17:15:17+03:00" />
<meta property="article:modified_time" content="2021-10-09T22:00:59+03:00" />
@ -56,9 +56,9 @@ So we have 1879/7100 (26.46%) matching already
"@type": "BlogPosting",
"headline": "October, 2021",
"url": "https://alanorth.github.io/cgspace-notes/2021-10/",
"wordCount": "1882",
"wordCount": "2199",
"datePublished": "2021-10-01T11:14:07+03:00",
"dateModified": "2021-10-08T17:15:17+03:00",
"dateModified": "2021-10-09T22:00:59+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
@ -412,6 +412,55 @@ $ csvjoin -c id /tmp/ilri-deduplicated-items.csv /tmp/ilri-deduplicated-items-cl
</code></pre><ul>
<li>I did cleanups on about seventy items with invalid and mixed ISSNs/ISBNs</li>
</ul>
<h2 id="2021-10-10">2021-10-10</h2>
<ul>
<li>Start testing DSpace 7.1-SNAPSHOT to see if it has the duplicate item bug on <code>metadata-export</code> (DS-4211)</li>
<li>First create a new PostgreSQL 13 container:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ podman run --name dspacedb13 -v dspacedb13_data:/var/lib/postgresql/data -e POSTGRES_PASSWORD=postgres -p 5433:5432 -d postgres:13-alpine
$ createuser -h localhost -p 5433 -U postgres --pwprompt dspacetest
$ createdb -h localhost -p 5433 -U postgres -O dspacetest --encoding=UNICODE dspace7
$ psql -h localhost -p 5433 -U postgres dspace7 -c 'CREATE EXTENSION pgcrypto;'
</code></pre><ul>
<li>Then edit setting in <code>dspace/config/local.cfg</code> and build the backend server with Java 11:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ mvn package
$ cd dspace/target/dspace-installer
$ ant fresh_install
# fix database not being fully ready, causing Tomcat to fail to start the server application
$ ~/dspace7/bin/dspace database migrate
</code></pre><ul>
<li>Copy Solr configs and start Solr:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ cp -Rv ~/dspace7/solr/* ~/src/solr-8.8.2/server/solr/configsets
$ ~/src/solr-8.8.2/bin/solr start
</code></pre><ul>
<li>Start my local Tomcat 9 instance:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ systemctl --user start tomcat9@dspace7
</code></pre><ul>
<li>This works, so now I will drop the default database and import a dump from CGSpace</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ systemctl --user stop tomcat9@dspace7
$ dropdb -h localhost -p 5433 -U postgres dspace7
$ createdb -h localhost -p 5433 -U postgres -O dspacetest --encoding=UNICODE dspace7
$ psql -h localhost -p 5433 -U postgres -c 'alter user dspacetest superuser;'
$ pg_restore -h localhost -p 5433 -U postgres -d dspace7 -O --role=dspacetest -h localhost dspace-2021-10-09.backup
$ psql -h localhost -p 5433 -U postgres -c 'alter user dspacetest nosuperuser;'
</code></pre><ul>
<li>Delete Atmire migrations and some others that were &ldquo;unresolved&rdquo;:</li>
</ul>
<pre tabindex="0"><code class="language-console" data-lang="console">$ psql -h localhost -p 5433 -U postgres dspace7 -c &quot;DELETE FROM schema_version WHERE description LIKE '%Atmire%' OR description LIKE '%CUA%' OR description LIKE '%cua%';&quot;
$ psql -h localhost -p 5433 -U postgres dspace7 -c &quot;DELETE FROM schema_version WHERE version IN ('5.0.2017.09.25', '6.0.2017.01.30', '6.0.2017.09.25');&quot;
</code></pre><ul>
<li>Now DSpace 7 starts with my CGSpace data&hellip; nice</li>
<li>I tested the <code>metadata-export</code> on DSpace 7.1-SNAPSHOT and it still has the duplicate items issue introduced by DS-4211
<ul>
<li>I filed a GitHub issue and notified nwoodward: <a href="https://github.com/DSpace/DSpace/issues/7988">https://github.com/DSpace/DSpace/issues/7988</a></li>
</ul>
</li>
<li>Start a full reindex on AReS</li>
</ul>
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