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Update notes for 2018-07-01

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## 2018-07-01 ## 2018-07-01
- Test the DSpace 5.8 upgrade on DSpace Test - I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:
- First take a backup of the current database:
``` ```
$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace $ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
``` ```
- During the `mvn package` stage I kept getting issues with java running out of memory: - During the `mvn package` stage on the 5.8 branch I kept getting issues with java running out of memory:
``` ```
There is insufficient memory for the Java Runtime Environment to continue. There is insufficient memory for the Java Runtime Environment to continue.
``` ```
- So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM): <!--more-->
- As the machine only has 8GB of RAM, I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process:
``` ```
$ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m" $ export JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx1024m"
$ mvn package... $ mvn -U -Dmirage2.on=true -Dmirage2.deps.included=false -Denv=dspacetest.cgiar.org -P \!dspace-lni,\!dspace-rdf,\!dspace-sword,\!dspace-swordv2 clean package
``` ```
<!--more--> - Then I stopped the Tomcat 7 service, ran the ant update, and manually ran the old and ignored SQL migrations:
```
$ sudo su - postgres
$ psql dspace
...
dspace=# begin;
BEGIN
dspace=# \i Atmire-DSpace-5.8-Schema-Migration.sql
DELETE 0
UPDATE 1
DELETE 1
dspace=# commit
dspace=# \q
$ exit
$ dspace database migrate ignored
```
- After that I started Tomcat 7 and DSpace seems to be working, now I need to tell our colleagues to try stuff and report issues they have
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->

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I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:
$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
During the mvn package stage on the 5.8 branch I kept getting issues with java running out of memory:
There is insufficient memory for the Java Runtime Environment to continue.
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I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:
$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
During the mvn package stage on the 5.8 branch I kept getting issues with java running out of memory:
There is insufficient memory for the Java Runtime Environment to continue.
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<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-07/">July, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-07-01T12:56:54&#43;03:00">Sun Jul 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-07-01">2018-07-01</h2>
<ul>
<li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
</ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre>
<ul>
<li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre>
<p></p>
<ul>
<li>As the machine only has 8GB of RAM, I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process:</li>
</ul>
<pre><code>$ export JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx1024m&quot;
$ mvn -U -Dmirage2.on=true -Dmirage2.deps.included=false -Denv=dspacetest.cgiar.org -P \!dspace-lni,\!dspace-rdf,\!dspace-sword,\!dspace-swordv2 clean package
</code></pre>
<ul>
<li>Then I stopped the Tomcat 7 service, ran the ant update, and manually ran the old and ignored SQL migrations:</li>
</ul>
<pre><code>$ sudo su - postgres
$ psql dspace
...
dspace=# begin;
BEGIN
dspace=# \i Atmire-DSpace-5.8-Schema-Migration.sql
DELETE 0
UPDATE 1
DELETE 1
dspace=# commit
dspace=# \q
$ exit
$ dspace database migrate ignored
</code></pre>
<ul>
<li>After that I started Tomcat 7 and DSpace seems to be working, now I need to tell our colleagues to try stuff and report issues they have</li>
</ul>
<!-- vim: set sw=2 ts=2: -->
</article>
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<aside class="col-sm-3 ml-auto blog-sidebar">
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<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2018-07/">July, 2018</a></li>
<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>
<li><a href="/cgspace-notes/2018-05/">May, 2018</a></li>
<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>
<li><a href="/cgspace-notes/2018-03/">March, 2018</a></li>
</ol>
</section>
<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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<h2 id="2018-07-01">2018-07-01</h2> <h2 id="2018-07-01">2018-07-01</h2>
<ul> <ul>
<li>Test the DSpace 5.8 upgrade on DSpace Test</li> <li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
<li>First take a backup of the current database:</li>
</ul> </ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace <pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre> </code></pre>
<ul> <ul>
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li> <li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul> </ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue. <pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre> </code></pre>
<ul>
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
</ul>
<pre><code>$ export JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx1024m&quot;
$ mvn package...
</code></pre>
<p></p> <p></p>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a> <a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article> </article>

13
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@ -113,28 +113,19 @@
<h2 id="2018-07-01">2018-07-01</h2> <h2 id="2018-07-01">2018-07-01</h2>
<ul> <ul>
<li>Test the DSpace 5.8 upgrade on DSpace Test</li> <li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
<li>First take a backup of the current database:</li>
</ul> </ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace <pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre> </code></pre>
<ul> <ul>
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li> <li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul> </ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue. <pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre> </code></pre>
<ul>
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
</ul>
<pre><code>$ export JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx1024m&quot;
$ mvn package...
</code></pre>
<p></p> <p></p>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a> <a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article> </article>

13
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<description>&lt;h2 id=&#34;2018-07-01&#34;&gt;2018-07-01&lt;/h2&gt; <description>&lt;h2 id=&#34;2018-07-01&#34;&gt;2018-07-01&lt;/h2&gt;
&lt;ul&gt; &lt;ul&gt;
&lt;li&gt;Test the DSpace 5.8 upgrade on DSpace Test&lt;/li&gt; &lt;li&gt;I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:&lt;/li&gt;
&lt;li&gt;First take a backup of the current database:&lt;/li&gt;
&lt;/ul&gt; &lt;/ul&gt;
&lt;pre&gt;&lt;code&gt;$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace &lt;pre&gt;&lt;code&gt;$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
&lt;/code&gt;&lt;/pre&gt; &lt;/code&gt;&lt;/pre&gt;
&lt;ul&gt; &lt;ul&gt;
&lt;li&gt;During the &lt;code&gt;mvn package&lt;/code&gt; stage I kept getting issues with java running out of memory:&lt;/li&gt; &lt;li&gt;During the &lt;code&gt;mvn package&lt;/code&gt; stage on the 5.8 branch I kept getting issues with java running out of memory:&lt;/li&gt;
&lt;/ul&gt; &lt;/ul&gt;
&lt;pre&gt;&lt;code&gt;There is insufficient memory for the Java Runtime Environment to continue. &lt;pre&gt;&lt;code&gt;There is insufficient memory for the Java Runtime Environment to continue.
&lt;/code&gt;&lt;/pre&gt; &lt;/code&gt;&lt;/pre&gt;
&lt;ul&gt;
&lt;li&gt;So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):&lt;/li&gt;
&lt;/ul&gt;
&lt;pre&gt;&lt;code&gt;$ export JAVA_OPTS=&amp;quot;-Dfile.encoding=UTF-8 -Xmx1024m&amp;quot;
$ mvn package...
&lt;/code&gt;&lt;/pre&gt;
&lt;p&gt;&lt;/p&gt;</description> &lt;p&gt;&lt;/p&gt;</description>
</item> </item>

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@ -113,28 +113,19 @@
<h2 id="2018-07-01">2018-07-01</h2> <h2 id="2018-07-01">2018-07-01</h2>
<ul> <ul>
<li>Test the DSpace 5.8 upgrade on DSpace Test</li> <li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
<li>First take a backup of the current database:</li>
</ul> </ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace <pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre> </code></pre>
<ul> <ul>
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li> <li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul> </ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue. <pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre> </code></pre>
<ul>
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
</ul>
<pre><code>$ export JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx1024m&quot;
$ mvn package...
</code></pre>
<p></p> <p></p>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a> <a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article> </article>

13
docs/posts/index.xml
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@ -20,28 +20,19 @@
<description>&lt;h2 id=&#34;2018-07-01&#34;&gt;2018-07-01&lt;/h2&gt; <description>&lt;h2 id=&#34;2018-07-01&#34;&gt;2018-07-01&lt;/h2&gt;
&lt;ul&gt; &lt;ul&gt;
&lt;li&gt;Test the DSpace 5.8 upgrade on DSpace Test&lt;/li&gt; &lt;li&gt;I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:&lt;/li&gt;
&lt;li&gt;First take a backup of the current database:&lt;/li&gt;
&lt;/ul&gt; &lt;/ul&gt;
&lt;pre&gt;&lt;code&gt;$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace &lt;pre&gt;&lt;code&gt;$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
&lt;/code&gt;&lt;/pre&gt; &lt;/code&gt;&lt;/pre&gt;
&lt;ul&gt; &lt;ul&gt;
&lt;li&gt;During the &lt;code&gt;mvn package&lt;/code&gt; stage I kept getting issues with java running out of memory:&lt;/li&gt; &lt;li&gt;During the &lt;code&gt;mvn package&lt;/code&gt; stage on the 5.8 branch I kept getting issues with java running out of memory:&lt;/li&gt;
&lt;/ul&gt; &lt;/ul&gt;
&lt;pre&gt;&lt;code&gt;There is insufficient memory for the Java Runtime Environment to continue. &lt;pre&gt;&lt;code&gt;There is insufficient memory for the Java Runtime Environment to continue.
&lt;/code&gt;&lt;/pre&gt; &lt;/code&gt;&lt;/pre&gt;
&lt;ul&gt;
&lt;li&gt;So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):&lt;/li&gt;
&lt;/ul&gt;
&lt;pre&gt;&lt;code&gt;$ export JAVA_OPTS=&amp;quot;-Dfile.encoding=UTF-8 -Xmx1024m&amp;quot;
$ mvn package...
&lt;/code&gt;&lt;/pre&gt;
&lt;p&gt;&lt;/p&gt;</description> &lt;p&gt;&lt;/p&gt;</description>
</item> </item>

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@ -4,7 +4,7 @@
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/2018-07/</loc> <loc>https://alanorth.github.io/cgspace-notes/2018-07/</loc>
<lastmod>2018-07-01T12:56:54+03:00</lastmod> <lastmod>2018-07-01T14:34:56+03:00</lastmod>
</url> </url>
<url> <url>
@ -174,7 +174,7 @@
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/</loc>
<lastmod>2018-07-01T12:56:54+03:00</lastmod> <lastmod>2018-07-01T14:34:56+03:00</lastmod>
<priority>0</priority> <priority>0</priority>
</url> </url>
@ -185,7 +185,7 @@
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
<lastmod>2018-07-01T12:56:54+03:00</lastmod> <lastmod>2018-07-01T14:34:56+03:00</lastmod>
<priority>0</priority> <priority>0</priority>
</url> </url>
@ -197,13 +197,13 @@
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc> <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
<lastmod>2018-07-01T12:56:54+03:00</lastmod> <lastmod>2018-07-01T14:34:56+03:00</lastmod>
<priority>0</priority> <priority>0</priority>
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<loc>https://alanorth.github.io/cgspace-notes/tags/</loc> <loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
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<priority>0</priority> <priority>0</priority>
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@ -113,28 +113,19 @@
<h2 id="2018-07-01">2018-07-01</h2> <h2 id="2018-07-01">2018-07-01</h2>
<ul> <ul>
<li>Test the DSpace 5.8 upgrade on DSpace Test</li> <li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
<li>First take a backup of the current database:</li>
</ul> </ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace <pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre> </code></pre>
<ul> <ul>
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li> <li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul> </ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue. <pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre> </code></pre>
<ul>
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
</ul>
<pre><code>$ export JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx1024m&quot;
$ mvn package...
</code></pre>
<p></p> <p></p>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a> <a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article> </article>

13
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@ -98,28 +98,19 @@
<h2 id="2018-07-01">2018-07-01</h2> <h2 id="2018-07-01">2018-07-01</h2>
<ul> <ul>
<li>Test the DSpace 5.8 upgrade on DSpace Test</li> <li>I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:</li>
<li>First take a backup of the current database:</li>
</ul> </ul>
<pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace <pre><code>$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
</code></pre> </code></pre>
<ul> <ul>
<li>During the <code>mvn package</code> stage I kept getting issues with java running out of memory:</li> <li>During the <code>mvn package</code> stage on the 5.8 branch I kept getting issues with java running out of memory:</li>
</ul> </ul>
<pre><code>There is insufficient memory for the Java Runtime Environment to continue. <pre><code>There is insufficient memory for the Java Runtime Environment to continue.
</code></pre> </code></pre>
<ul>
<li>So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):</li>
</ul>
<pre><code>$ export JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx1024m&quot;
$ mvn package...
</code></pre>
<p></p> <p></p>
<a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a> <a href='https://alanorth.github.io/cgspace-notes/2018-07/'>Read more →</a>
</article> </article>

13
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@ -20,28 +20,19 @@
<description>&lt;h2 id=&#34;2018-07-01&#34;&gt;2018-07-01&lt;/h2&gt; <description>&lt;h2 id=&#34;2018-07-01&#34;&gt;2018-07-01&lt;/h2&gt;
&lt;ul&gt; &lt;ul&gt;
&lt;li&gt;Test the DSpace 5.8 upgrade on DSpace Test&lt;/li&gt; &lt;li&gt;I want to upgrade DSpace Test to DSpace 5.8 so I took a backup of its current database just in case:&lt;/li&gt;
&lt;li&gt;First take a backup of the current database:&lt;/li&gt;
&lt;/ul&gt; &lt;/ul&gt;
&lt;pre&gt;&lt;code&gt;$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace &lt;pre&gt;&lt;code&gt;$ pg_dump -b -v -o --format=custom -U dspace -f dspace-2018-07-01.backup dspace
&lt;/code&gt;&lt;/pre&gt; &lt;/code&gt;&lt;/pre&gt;
&lt;ul&gt; &lt;ul&gt;
&lt;li&gt;During the &lt;code&gt;mvn package&lt;/code&gt; stage I kept getting issues with java running out of memory:&lt;/li&gt; &lt;li&gt;During the &lt;code&gt;mvn package&lt;/code&gt; stage on the 5.8 branch I kept getting issues with java running out of memory:&lt;/li&gt;
&lt;/ul&gt; &lt;/ul&gt;
&lt;pre&gt;&lt;code&gt;There is insufficient memory for the Java Runtime Environment to continue. &lt;pre&gt;&lt;code&gt;There is insufficient memory for the Java Runtime Environment to continue.
&lt;/code&gt;&lt;/pre&gt; &lt;/code&gt;&lt;/pre&gt;
&lt;ul&gt;
&lt;li&gt;So I reduced the Tomcat memory heap from 5120m to 4096m so I could try to allocate more to the build process (machine only has 8GB of RAM):&lt;/li&gt;
&lt;/ul&gt;
&lt;pre&gt;&lt;code&gt;$ export JAVA_OPTS=&amp;quot;-Dfile.encoding=UTF-8 -Xmx1024m&amp;quot;
$ mvn package...
&lt;/code&gt;&lt;/pre&gt;
&lt;p&gt;&lt;/p&gt;</description> &lt;p&gt;&lt;/p&gt;</description>
</item> </item>