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Add notes for 2020-09-23

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Alan Orth 2020-09-23 12:59:10 +03:00
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content/posts/2020-09.md
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@ -344,6 +344,8 @@ DELETE 12
dspace=# COMMIT; dspace=# COMMIT;
``` ```
- I added all CG center- and CRP-specific subject fields and mapped them to `dc.subject` in AReS
- After forcing a re-harvesting now the review status is much cleaner and the missing subjects are available
- Last week Natalia from CIAT had asked me to download all the PDFs for a certain query: - Last week Natalia from CIAT had asked me to download all the PDFs for a certain query:
- items with status "Open Access" - items with status "Open Access"
- items with type "Journal Article" - items with type "Journal Article"
@ -351,4 +353,40 @@ dspace=# COMMIT;
- The resulting OpenSearch query is: https://cgspace.cgiar.org/open-search/discover?query=type:"Journal Article" AND status:"Open Access" AND Water Land Ecosystems trade offs&rpp=1 - The resulting OpenSearch query is: https://cgspace.cgiar.org/open-search/discover?query=type:"Journal Article" AND status:"Open Access" AND Water Land Ecosystems trade offs&rpp=1
- There were 241 results with a total of 208 PDFs, which I downloaded with my `get-wle-pdfs.py` script and shared to her via bashupload.com - There were 241 results with a total of 208 PDFs, which I downloaded with my `get-wle-pdfs.py` script and shared to her via bashupload.com
## 2020-09-23
- Peter said he was having problems submitting items to CGSpace
- On a hunch I looked at the PostgreSQL locks in Munin and indeed the normal issue with locks is back (though I haven't seen it in a few months?)
![PostgreSQL connections day](/cgspace-notes/2020/09/postgres_connections_ALL-day.png)
- Instead of restarting Tomcat I restarted the PostgreSQL service and then Peter said he was able to submit the item...
- Experiment with doing direct queries for items in the [dspace-statistics-api](https://github.com/ilri/dspace-statistics-api)
- I tested querying a handful of item UUIDs with a date range and returning their hits faceted by `id`
- Assuming a list of item UUIDs was posted to the REST API we could prepare them for a Solr query by joining them into a string with "OR" and escaping the hyphens:
```
...
item_ids = ['0079470a-87a1-4373-beb1-b16e3f0c4d81', '007a9df1-0871-4612-8b28-5335982198cb']
item_ids_str = ' OR '.join(item_ids).replace('-', '\-')
...
solr_query_params = {
"q": f"id:({item_ids_str})",
"fq": "type:2 AND isBot:false AND statistics_type:view AND time:[2020-01-01T00:00:00Z TO 2020-09-02T00:00:00Z]",
"facet": "true",
"facet.field": "id",
"facet.mincount": 1,
"facet.limit": 1,
"facet.offset": 0,
"stats": "true",
"stats.field": "id",
"stats.calcdistinct": "true",
"shards": shards,
"rows": 0,
"wt": "json",
}
```
- The date range format for Solr is important, but it seems we only need to add `T00:00:00Z` to the normal ISO 8601 YYYY-MM-DD strings
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->

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<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-09/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2020-09/" />
<meta property="article:published_time" content="2020-09-02T15:35:54+03:00" /> <meta property="article:published_time" content="2020-09-02T15:35:54+03:00" />
<meta property="article:modified_time" content="2020-09-22T12:38:53+03:00" /> <meta property="article:modified_time" content="2020-09-22T14:14:18+03:00" />
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="September, 2020"/> <meta name="twitter:title" content="September, 2020"/>
@ -55,9 +55,9 @@ I filed an issue on OpenRXV to make some minor edits to the admin UI: https://gi
"@type": "BlogPosting", "@type": "BlogPosting",
"headline": "September, 2020", "headline": "September, 2020",
"url": "https://alanorth.github.io/cgspace-notes/2020-09/", "url": "https://alanorth.github.io/cgspace-notes/2020-09/",
"wordCount": "2380", "wordCount": "2608",
"datePublished": "2020-09-02T15:35:54+03:00", "datePublished": "2020-09-02T15:35:54+03:00",
"dateModified": "2020-09-22T12:38:53+03:00", "dateModified": "2020-09-22T14:14:18+03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -539,6 +539,8 @@ dspace=# DELETE FROM metadatavalue WHERE text_value='Report' AND resource_type_i
DELETE 12 DELETE 12
dspace=# COMMIT; dspace=# COMMIT;
</code></pre><ul> </code></pre><ul>
<li>I added all CG center- and CRP-specific subject fields and mapped them to <code>dc.subject</code> in AReS</li>
<li>After forcing a re-harvesting now the review status is much cleaner and the missing subjects are available</li>
<li>Last week Natalia from CIAT had asked me to download all the PDFs for a certain query: <li>Last week Natalia from CIAT had asked me to download all the PDFs for a certain query:
<ul> <ul>
<li>items with status &ldquo;Open Access&rdquo;</li> <li>items with status &ldquo;Open Access&rdquo;</li>
@ -549,6 +551,46 @@ dspace=# COMMIT;
</ul> </ul>
</li> </li>
</ul> </ul>
<h2 id="2020-09-23">2020-09-23</h2>
<ul>
<li>Peter said he was having problems submitting items to CGSpace
<ul>
<li>On a hunch I looked at the PostgreSQL locks in Munin and indeed the normal issue with locks is back (though I haven&rsquo;t seen it in a few months?)</li>
</ul>
</li>
</ul>
<p><img src="/cgspace-notes/2020/09/postgres_connections_ALL-day.png" alt="PostgreSQL connections day"></p>
<ul>
<li>Instead of restarting Tomcat I restarted the PostgreSQL service and then Peter said he was able to submit the item&hellip;</li>
<li>Experiment with doing direct queries for items in the <a href="https://github.com/ilri/dspace-statistics-api">dspace-statistics-api</a>
<ul>
<li>I tested querying a handful of item UUIDs with a date range and returning their hits faceted by <code>id</code></li>
<li>Assuming a list of item UUIDs was posted to the REST API we could prepare them for a Solr query by joining them into a string with &ldquo;OR&rdquo; and escaping the hyphens:</li>
</ul>
</li>
</ul>
<pre><code>...
item_ids = ['0079470a-87a1-4373-beb1-b16e3f0c4d81', '007a9df1-0871-4612-8b28-5335982198cb']
item_ids_str = ' OR '.join(item_ids).replace('-', '\-')
...
solr_query_params = {
&quot;q&quot;: f&quot;id:({item_ids_str})&quot;,
&quot;fq&quot;: &quot;type:2 AND isBot:false AND statistics_type:view AND time:[2020-01-01T00:00:00Z TO 2020-09-02T00:00:00Z]&quot;,
&quot;facet&quot;: &quot;true&quot;,
&quot;facet.field&quot;: &quot;id&quot;,
&quot;facet.mincount&quot;: 1,
&quot;facet.limit&quot;: 1,
&quot;facet.offset&quot;: 0,
&quot;stats&quot;: &quot;true&quot;,
&quot;stats.field&quot;: &quot;id&quot;,
&quot;stats.calcdistinct&quot;: &quot;true&quot;,
&quot;shards&quot;: shards,
&quot;rows&quot;: 0,
&quot;wt&quot;: &quot;json&quot;,
}
</code></pre><ul>
<li>The date range format for Solr is important, but it seems we only need to add <code>T00:00:00Z</code> to the normal ISO 8601 YYYY-MM-DD strings</li>
</ul>
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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