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Alan Orth 2019-08-04 22:49:04 +03:00
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---
title: "August, 2019"
date: 2019-08-03T12:39:51+03:00
author: "Alan Orth"
tags: ["Notes"]
---
## 2019-08-03
- Look at Bioversity's latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name...
## 2019-08-04
- Deploy ORCID identifier updates requested by Bioversity to CGSpace
- Run system updates on CGSpace (linode18) and reboot it
- Before updating it I checked Solr and verified that all statistics cores were loaded properly...
- After rebooting, all statistics cores were loaded... wow, that's lucky.
- Run system updates on DSpace Test (linode19) and reboot it
<!--more-->
<!-- vim: set sw=2 ts=2: -->

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@ -278,16 +278,16 @@ db.statementpool = true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -294,16 +294,16 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -210,16 +210,16 @@ $ find SimpleArchiveForBio/ -iname &ldquo;*.pdf&rdquo; -exec basename {} \; | so
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -455,16 +455,16 @@ Bitstream: tést señora alimentación.pdf
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -361,16 +361,16 @@ metadata_value_id | resource_id | metadata_field_id | text_value | text_lang | p
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -577,16 +577,16 @@ dspace.log.2016-04-27:7271
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -435,16 +435,16 @@ sys 0m20.540s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -470,16 +470,16 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -381,16 +381,16 @@ discovery.index.authority.ignore-variants=true
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -460,16 +460,16 @@ $ JAVA_OPTS=&quot;-Dfile.encoding=UTF-8 -Xmx512m&quot; /home/cgspace.cgiar.org/b
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -734,16 +734,16 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -439,16 +439,16 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -640,16 +640,16 @@ org.dspace.discovery.SearchServiceException: Error executing query
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -907,16 +907,16 @@ $ exit
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -432,16 +432,16 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -497,16 +497,16 @@ COPY 1968
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -434,16 +434,16 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -702,16 +702,16 @@ $ gem install compass -v 1.0.3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -462,16 +462,16 @@ UPDATE 187
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -295,16 +295,16 @@ text_value
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -315,16 +315,16 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -611,16 +611,16 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -781,16 +781,16 @@ Cert Status: good
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -547,16 +547,16 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -1157,16 +1157,16 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -938,16 +938,16 @@ DELETE 20
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -1732,16 +1732,16 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -1286,16 +1286,16 @@ UPDATE 3
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -714,16 +714,16 @@ Fixed 5 occurences of: GENEBANKS
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -721,16 +721,16 @@ java.lang.NoSuchMethodError: java.nio.ByteBuffer.position(I)Ljava/nio/ByteBuffer
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -615,16 +615,16 @@ $ psql -h localhost -U postgres dspacetest
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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@ -583,16 +583,16 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 &gt; map-to-cifor-archive.csv
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

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docs/2018-07/index.html
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@ -674,16 +674,16 @@ count
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2018-08/index.html
View File

@ -547,16 +547,16 @@ $ dspace database migrate ignored
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2018-09/index.html
View File

@ -909,16 +909,16 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2018-10/index.html
View File

@ -796,16 +796,16 @@ $ curl -X GET -H &quot;Content-Type: application/json&quot; -H &quot;Accept: app
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2018-11/index.html
View File

@ -651,16 +651,16 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2018-12/index.html
View File

@ -684,16 +684,16 @@ UPDATE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2019-01/index.html
View File

@ -1397,16 +1397,16 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2019-02/index.html
View File

@ -1588,16 +1588,16 @@ Please see the DSpace documentation for assistance.
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2019-03/index.html
View File

@ -1380,16 +1380,16 @@ sys 0m2.551s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2019-04/index.html
View File

@ -1439,16 +1439,16 @@ UPDATE 14
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2019-05/index.html
View File

@ -728,16 +728,16 @@ COPY 64871
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/2019-06/index.html
View File

@ -341,16 +341,16 @@ UPDATE 2
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

10
docs/2019-07/index.html
View File

@ -21,7 +21,7 @@ Abenet had another similar issue a few days ago when trying to find the stats fo
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-07/" />
<meta property="article:published_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="article:modified_time" content="2019-07-30T00:37:24&#43;03:00"/>
<meta property="article:modified_time" content="2019-07-30T20:15:21&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="July, 2019"/>
@ -49,7 +49,7 @@ Abenet had another similar issue a few days ago when trying to find the stats fo
"url": "https:\/\/alanorth.github.io\/cgspace-notes\/2019-07\/",
"wordCount": "2330",
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@ -624,16 +624,16 @@ issn.validate('1020-3362')
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

222
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View File

@ -0,0 +1,222 @@
<!DOCTYPE html>
<html lang="en">
<head>
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<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="August, 2019" />
<meta property="og:description" content="2019-08-03
Look at Bioversity&rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&hellip;
2019-08-04
Deploy ORCID identifier updates requested by Bioversity to CGSpace
Run system updates on CGSpace (linode18) and reboot it
Before updating it I checked Solr and verified that all statistics cores were loaded properly&hellip;
After rebooting, all statistics cores were loaded&hellip; wow, that&rsquo;s lucky.
Run system updates on DSpace Test (linode19) and reboot it
" />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2019-08/" />
<meta property="article:published_time" content="2019-08-03T12:39:51&#43;03:00"/>
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<meta name="twitter:title" content="August, 2019"/>
<meta name="twitter:description" content="2019-08-03
Look at Bioversity&rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&hellip;
2019-08-04
Deploy ORCID identifier updates requested by Bioversity to CGSpace
Run system updates on CGSpace (linode18) and reboot it
Before updating it I checked Solr and verified that all statistics cores were loaded properly&hellip;
After rebooting, all statistics cores were loaded&hellip; wow, that&rsquo;s lucky.
Run system updates on DSpace Test (linode19) and reboot it
"/>
<meta name="generator" content="Hugo 0.55.6" />
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<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-08/">August, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-08-03T12:39:51&#43;03:00">Sat Aug 03, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2019-08-03">2019-08-03</h2>
<ul>
<li>Look at Bioversity&rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&hellip;</li>
</ul>
<h2 id="2019-08-04">2019-08-04</h2>
<ul>
<li>Deploy ORCID identifier updates requested by Bioversity to CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it
<ul>
<li>Before updating it I checked Solr and verified that all statistics cores were loaded properly&hellip;</li>
<li>After rebooting, all statistics cores were loaded&hellip; wow, that&rsquo;s lucky.</li>
</ul></li>
<li>Run system updates on DSpace Test (linode19) and reboot it</li>
</ul>
<!-- vim: set sw=2 ts=2: -->
</article>
</div> <!-- /.blog-main -->
<aside class="col-sm-3 ml-auto blog-sidebar">
<section class="sidebar-module">
<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
</ol>
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<section class="sidebar-module">
<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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6
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@ -87,16 +87,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

64
docs/categories/index.html
View File

@ -89,6 +89,41 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-08/">August, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-08-03T12:39:51&#43;03:00">Sat Aug 03, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2019-08-03">2019-08-03</h2>
<ul>
<li>Look at Bioversity&rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&hellip;</li>
</ul>
<h2 id="2019-08-04">2019-08-04</h2>
<ul>
<li>Deploy ORCID identifier updates requested by Bioversity to CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it
<ul>
<li>Before updating it I checked Solr and verified that all statistics cores were loaded properly&hellip;</li>
<li>After rebooting, all statistics cores were loaded&hellip; wow, that&rsquo;s lucky.</li>
</ul></li>
<li>Run system updates on DSpace Test (linode19) and reboot it</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-08/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
@ -409,29 +444,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54&#43;03:00">Mon Oct 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -456,16 +468,16 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/categories/notes/index.html
View File

@ -105,16 +105,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

54
docs/categories/page/2/index.html
View File

@ -89,6 +89,29 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54&#43;03:00">Mon Oct 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
@ -416,31 +439,6 @@ dspace.log.2018-01-02:34
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-12/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/" rel="prev" role="button">Previous page</a>
@ -465,16 +463,16 @@ dspace.log.2018-01-02:34
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

72
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@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
@ -341,47 +366,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-03-01T17:08:52&#43;02:00">Wed Mar 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-03-01">2017-03-01</h2>
<ul>
<li>Run the 279 CIAT author corrections on CGSpace</li>
</ul>
<h2 id="2017-03-02">2017-03-02</h2>
<ul>
<li>Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace</li>
<li>CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles</li>
<li>They might come in at the top level in one &ldquo;CGIAR System&rdquo; community, or with several communities</li>
<li>I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?</li>
<li>Need to send Peter and Michael some notes about this in a few days</li>
<li>Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI</li>
<li>Filed an issue on DSpace issue tracker for the <code>filter-media</code> bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: <a href="https://jira.duraspace.org/browse/DS-3516">DS-3516</a></li>
<li>Discovered that the ImageMagic <code>filter-media</code> plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK</li>
<li><p>Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing regeneration using DSpace 5.x&rsquo;s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see <a href="https://cgspace.cgiar.org/handle/10568/51999"><sup>10568</sup>&frasl;<sub>51999</sub></a>):</p>
<pre><code>$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-03/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/2/" rel="prev" role="button">Previous page</a>
@ -406,16 +390,16 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

76
docs/categories/page/4/index.html
View File

@ -89,6 +89,47 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-03-01T17:08:52&#43;02:00">Wed Mar 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-03-01">2017-03-01</h2>
<ul>
<li>Run the 279 CIAT author corrections on CGSpace</li>
</ul>
<h2 id="2017-03-02">2017-03-02</h2>
<ul>
<li>Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace</li>
<li>CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles</li>
<li>They might come in at the top level in one &ldquo;CGIAR System&rdquo; community, or with several communities</li>
<li>I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?</li>
<li>Need to send Peter and Michael some notes about this in a few days</li>
<li>Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI</li>
<li>Filed an issue on DSpace issue tracker for the <code>filter-media</code> bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: <a href="https://jira.duraspace.org/browse/DS-3516">DS-3516</a></li>
<li>Discovered that the ImageMagic <code>filter-media</code> plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK</li>
<li><p>Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing regeneration using DSpace 5.x&rsquo;s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see <a href="https://cgspace.cgiar.org/handle/10568/51999"><sup>10568</sup>&frasl;<sub>51999</sub></a>):</p>
<pre><code>$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-03/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
@ -366,35 +407,6 @@ text_value
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00&#43;03:00">Sun May 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-05-01">2016-05-01</h2>
<ul>
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
<li>I have blocked access to the API now</li>
<li><p>There are 3,000 IPs accessing the REST API in a 24-hour period!</p>
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
3168
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/categories/page/3/" rel="prev" role="button">Previous page</a>
@ -419,16 +431,16 @@ text_value
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

35
docs/categories/page/5/index.html
View File

@ -89,6 +89,35 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00&#43;03:00">Sun May 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-05-01">2016-05-01</h2>
<ul>
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
<li>I have blocked access to the API now</li>
<li><p>There are 3,000 IPs accessing the REST API in a 24-hour period!</p>
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
3168
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
@ -275,16 +304,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

6
docs/cgiar-library-migration/index.html
View File

@ -325,16 +325,16 @@ dspace=# select setval('handle_seq',86873);
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

68
docs/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,41 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-08/">August, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-08-03T12:39:51&#43;03:00">Sat Aug 03, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2019-08-03">2019-08-03</h2>
<ul>
<li>Look at Bioversity&rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&hellip;</li>
</ul>
<h2 id="2019-08-04">2019-08-04</h2>
<ul>
<li>Deploy ORCID identifier updates requested by Bioversity to CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it
<ul>
<li>Before updating it I checked Solr and verified that all statistics cores were loaded properly&hellip;</li>
<li>After rebooting, all statistics cores were loaded&hellip; wow, that&rsquo;s lucky.</li>
</ul></li>
<li>Run system updates on DSpace Test (linode19) and reboot it</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-08/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
@ -409,29 +444,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54&#43;03:00">Mon Oct 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -456,16 +468,16 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

28
docs/index.xml
View File

@ -6,11 +6,37 @@
<description>Recent content on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Mon, 01 Jul 2019 12:13:51 +0300</lastBuildDate>
<lastBuildDate>Sat, 03 Aug 2019 12:39:51 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>August, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-08/</link>
<pubDate>Sat, 03 Aug 2019 12:39:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-08/</guid>
<description>&lt;h2 id=&#34;2019-08-03&#34;&gt;2019-08-03&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Look at Bioversity&amp;rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;2019-08-04&#34;&gt;2019-08-04&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Deploy ORCID identifier updates requested by Bioversity to CGSpace&lt;/li&gt;
&lt;li&gt;Run system updates on CGSpace (linode18) and reboot it
&lt;ul&gt;
&lt;li&gt;Before updating it I checked Solr and verified that all statistics cores were loaded properly&amp;hellip;&lt;/li&gt;
&lt;li&gt;After rebooting, all statistics cores were loaded&amp;hellip; wow, that&amp;rsquo;s lucky.&lt;/li&gt;
&lt;/ul&gt;&lt;/li&gt;
&lt;li&gt;Run system updates on DSpace Test (linode19) and reboot it&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>July, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-07/</link>

58
docs/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,29 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54&#43;03:00">Mon Oct 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
@ -416,31 +439,6 @@ dspace.log.2018-01-02:34
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-12/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/" rel="prev" role="button">Previous page</a>
@ -465,16 +463,16 @@ dspace.log.2018-01-02:34
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

76
docs/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
@ -341,47 +366,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-03-01T17:08:52&#43;02:00">Wed Mar 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-03-01">2017-03-01</h2>
<ul>
<li>Run the 279 CIAT author corrections on CGSpace</li>
</ul>
<h2 id="2017-03-02">2017-03-02</h2>
<ul>
<li>Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace</li>
<li>CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles</li>
<li>They might come in at the top level in one &ldquo;CGIAR System&rdquo; community, or with several communities</li>
<li>I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?</li>
<li>Need to send Peter and Michael some notes about this in a few days</li>
<li>Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI</li>
<li>Filed an issue on DSpace issue tracker for the <code>filter-media</code> bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: <a href="https://jira.duraspace.org/browse/DS-3516">DS-3516</a></li>
<li>Discovered that the ImageMagic <code>filter-media</code> plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK</li>
<li><p>Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing regeneration using DSpace 5.x&rsquo;s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see <a href="https://cgspace.cgiar.org/handle/10568/51999"><sup>10568</sup>&frasl;<sub>51999</sub></a>):</p>
<pre><code>$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-03/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/2/" rel="prev" role="button">Previous page</a>
@ -406,16 +390,16 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

80
docs/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,47 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-03-01T17:08:52&#43;02:00">Wed Mar 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-03-01">2017-03-01</h2>
<ul>
<li>Run the 279 CIAT author corrections on CGSpace</li>
</ul>
<h2 id="2017-03-02">2017-03-02</h2>
<ul>
<li>Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace</li>
<li>CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles</li>
<li>They might come in at the top level in one &ldquo;CGIAR System&rdquo; community, or with several communities</li>
<li>I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?</li>
<li>Need to send Peter and Michael some notes about this in a few days</li>
<li>Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI</li>
<li>Filed an issue on DSpace issue tracker for the <code>filter-media</code> bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: <a href="https://jira.duraspace.org/browse/DS-3516">DS-3516</a></li>
<li>Discovered that the ImageMagic <code>filter-media</code> plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK</li>
<li><p>Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing regeneration using DSpace 5.x&rsquo;s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see <a href="https://cgspace.cgiar.org/handle/10568/51999"><sup>10568</sup>&frasl;<sub>51999</sub></a>):</p>
<pre><code>$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-03/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
@ -366,35 +407,6 @@ text_value
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00&#43;03:00">Sun May 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-05-01">2016-05-01</h2>
<ul>
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
<li>I have blocked access to the API now</li>
<li><p>There are 3,000 IPs accessing the REST API in a 24-hour period!</p>
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
3168
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/page/3/" rel="prev" role="button">Previous page</a>
@ -419,16 +431,16 @@ text_value
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

39
docs/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace Notes"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,35 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00&#43;03:00">Sun May 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-05-01">2016-05-01</h2>
<ul>
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
<li>I have blocked access to the API now</li>
<li><p>There are 3,000 IPs accessing the REST API in a 24-hour period!</p>
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
3168
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
@ -275,16 +304,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

68
docs/posts/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,41 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-08/">August, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-08-03T12:39:51&#43;03:00">Sat Aug 03, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2019-08-03">2019-08-03</h2>
<ul>
<li>Look at Bioversity&rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&hellip;</li>
</ul>
<h2 id="2019-08-04">2019-08-04</h2>
<ul>
<li>Deploy ORCID identifier updates requested by Bioversity to CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it
<ul>
<li>Before updating it I checked Solr and verified that all statistics cores were loaded properly&hellip;</li>
<li>After rebooting, all statistics cores were loaded&hellip; wow, that&rsquo;s lucky.</li>
</ul></li>
<li>Run system updates on DSpace Test (linode19) and reboot it</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-08/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
@ -409,29 +444,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54&#43;03:00">Mon Oct 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -456,16 +468,16 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

28
docs/posts/index.xml
View File

@ -6,11 +6,37 @@
<description>Recent content in Posts on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Mon, 01 Jul 2019 12:13:51 +0300</lastBuildDate>
<lastBuildDate>Sat, 03 Aug 2019 12:39:51 +0300</lastBuildDate>
<atom:link href="https://alanorth.github.io/cgspace-notes/posts/index.xml" rel="self" type="application/rss+xml" />
<item>
<title>August, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-08/</link>
<pubDate>Sat, 03 Aug 2019 12:39:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-08/</guid>
<description>&lt;h2 id=&#34;2019-08-03&#34;&gt;2019-08-03&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Look at Bioversity&amp;rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;2019-08-04&#34;&gt;2019-08-04&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Deploy ORCID identifier updates requested by Bioversity to CGSpace&lt;/li&gt;
&lt;li&gt;Run system updates on CGSpace (linode18) and reboot it
&lt;ul&gt;
&lt;li&gt;Before updating it I checked Solr and verified that all statistics cores were loaded properly&amp;hellip;&lt;/li&gt;
&lt;li&gt;After rebooting, all statistics cores were loaded&amp;hellip; wow, that&amp;rsquo;s lucky.&lt;/li&gt;
&lt;/ul&gt;&lt;/li&gt;
&lt;li&gt;Run system updates on DSpace Test (linode19) and reboot it&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>July, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-07/</link>

58
docs/posts/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,29 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54&#43;03:00">Mon Oct 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
@ -416,31 +439,6 @@ dspace.log.2018-01-02:34
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-12/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/" rel="prev" role="button">Previous page</a>
@ -465,16 +463,16 @@ dspace.log.2018-01-02:34
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

76
docs/posts/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
@ -341,47 +366,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-03-01T17:08:52&#43;02:00">Wed Mar 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-03-01">2017-03-01</h2>
<ul>
<li>Run the 279 CIAT author corrections on CGSpace</li>
</ul>
<h2 id="2017-03-02">2017-03-02</h2>
<ul>
<li>Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace</li>
<li>CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles</li>
<li>They might come in at the top level in one &ldquo;CGIAR System&rdquo; community, or with several communities</li>
<li>I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?</li>
<li>Need to send Peter and Michael some notes about this in a few days</li>
<li>Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI</li>
<li>Filed an issue on DSpace issue tracker for the <code>filter-media</code> bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: <a href="https://jira.duraspace.org/browse/DS-3516">DS-3516</a></li>
<li>Discovered that the ImageMagic <code>filter-media</code> plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK</li>
<li><p>Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing regeneration using DSpace 5.x&rsquo;s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see <a href="https://cgspace.cgiar.org/handle/10568/51999"><sup>10568</sup>&frasl;<sub>51999</sub></a>):</p>
<pre><code>$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-03/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/2/" rel="prev" role="button">Previous page</a>
@ -406,16 +390,16 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

80
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@ -10,7 +10,7 @@
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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@ -29,7 +29,7 @@
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@ -89,6 +89,47 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-03-01T17:08:52&#43;02:00">Wed Mar 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-03-01">2017-03-01</h2>
<ul>
<li>Run the 279 CIAT author corrections on CGSpace</li>
</ul>
<h2 id="2017-03-02">2017-03-02</h2>
<ul>
<li>Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace</li>
<li>CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles</li>
<li>They might come in at the top level in one &ldquo;CGIAR System&rdquo; community, or with several communities</li>
<li>I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?</li>
<li>Need to send Peter and Michael some notes about this in a few days</li>
<li>Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI</li>
<li>Filed an issue on DSpace issue tracker for the <code>filter-media</code> bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: <a href="https://jira.duraspace.org/browse/DS-3516">DS-3516</a></li>
<li>Discovered that the ImageMagic <code>filter-media</code> plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK</li>
<li><p>Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing regeneration using DSpace 5.x&rsquo;s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see <a href="https://cgspace.cgiar.org/handle/10568/51999"><sup>10568</sup>&frasl;<sub>51999</sub></a>):</p>
<pre><code>$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-03/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
@ -366,35 +407,6 @@ text_value
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00&#43;03:00">Sun May 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-05-01">2016-05-01</h2>
<ul>
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
<li>I have blocked access to the API now</li>
<li><p>There are 3,000 IPs accessing the REST API in a 24-hour period!</p>
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
3168
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/posts/page/3/" rel="prev" role="button">Previous page</a>
@ -419,16 +431,16 @@ text_value
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

39
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@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Posts"/>
@ -29,7 +29,7 @@
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@ -89,6 +89,35 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00&#43;03:00">Sun May 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-05-01">2016-05-01</h2>
<ul>
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
<li>I have blocked access to the API now</li>
<li><p>There are 3,000 IPs accessing the REST API in a 24-hour period!</p>
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
3168
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
@ -275,16 +304,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

3
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@ -1,11 +1,12 @@
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68
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@ -10,7 +10,7 @@
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@ -29,7 +29,7 @@
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@ -89,6 +89,41 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-08/">August, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-08-03T12:39:51&#43;03:00">Sat Aug 03, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2019-08-03">2019-08-03</h2>
<ul>
<li>Look at Bioversity&rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&hellip;</li>
</ul>
<h2 id="2019-08-04">2019-08-04</h2>
<ul>
<li>Deploy ORCID identifier updates requested by Bioversity to CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it
<ul>
<li>Before updating it I checked Solr and verified that all statistics cores were loaded properly&hellip;</li>
<li>After rebooting, all statistics cores were loaded&hellip; wow, that&rsquo;s lucky.</li>
</ul></li>
<li>Run system updates on DSpace Test (linode19) and reboot it</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-08/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
@ -409,29 +444,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54&#43;03:00">Mon Oct 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -456,16 +468,16 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

4
docs/tags/index.xml
View File

@ -6,7 +6,7 @@
<description>Recent content in Tags on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
<lastBuildDate>Mon, 01 Jul 2019 12:13:51 +0300</lastBuildDate>
<lastBuildDate>Sat, 03 Aug 2019 12:39:51 +0300</lastBuildDate>
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@ -14,7 +14,7 @@
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<title>Notes</title>
<link>https://alanorth.github.io/cgspace-notes/tags/notes/</link>
<pubDate>Mon, 01 Jul 2019 12:13:51 +0300</pubDate>
<pubDate>Sat, 03 Aug 2019 12:39:51 +0300</pubDate>
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66
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@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
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<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
@ -74,6 +74,41 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-08/">August, 2019</a></h2>
<p class="blog-post-meta"><time datetime="2019-08-03T12:39:51&#43;03:00">Sat Aug 03, 2019</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2019-08-03">2019-08-03</h2>
<ul>
<li>Look at Bioversity&rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&hellip;</li>
</ul>
<h2 id="2019-08-04">2019-08-04</h2>
<ul>
<li>Deploy ORCID identifier updates requested by Bioversity to CGSpace</li>
<li>Run system updates on CGSpace (linode18) and reboot it
<ul>
<li>Before updating it I checked Solr and verified that all statistics cores were loaded properly&hellip;</li>
<li>After rebooting, all statistics cores were loaded&hellip; wow, that&rsquo;s lucky.</li>
</ul></li>
<li>Run system updates on DSpace Test (linode19) and reboot it</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2019-08/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2019-07/">July, 2019</a></h2>
@ -394,29 +429,6 @@ sys 0m1.979s
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54&#43;03:00">Mon Oct 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
</article>
<nav class="blog-pagination">
@ -441,16 +453,16 @@ sys 0m1.979s
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

28
docs/tags/notes/index.xml
View File

@ -6,11 +6,37 @@
<description>Recent content in Notes on CGSpace Notes</description>
<generator>Hugo -- gohugo.io</generator>
<language>en-us</language>
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<lastBuildDate>Sat, 03 Aug 2019 12:39:51 +0300</lastBuildDate>
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<item>
<title>August, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-08/</link>
<pubDate>Sat, 03 Aug 2019 12:39:51 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2019-08/</guid>
<description>&lt;h2 id=&#34;2019-08-03&#34;&gt;2019-08-03&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Look at Bioversity&amp;rsquo;s latest migration CSV and now I see that Francesco has cleaned up the extra columns and the newline at the end of the file, but many of the column headers have an extra space in the name&amp;hellip;&lt;/li&gt;
&lt;/ul&gt;
&lt;h2 id=&#34;2019-08-04&#34;&gt;2019-08-04&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;Deploy ORCID identifier updates requested by Bioversity to CGSpace&lt;/li&gt;
&lt;li&gt;Run system updates on CGSpace (linode18) and reboot it
&lt;ul&gt;
&lt;li&gt;Before updating it I checked Solr and verified that all statistics cores were loaded properly&amp;hellip;&lt;/li&gt;
&lt;li&gt;After rebooting, all statistics cores were loaded&amp;hellip; wow, that&amp;rsquo;s lucky.&lt;/li&gt;
&lt;/ul&gt;&lt;/li&gt;
&lt;li&gt;Run system updates on DSpace Test (linode19) and reboot it&lt;/li&gt;
&lt;/ul&gt;</description>
</item>
<item>
<title>July, 2019</title>
<link>https://alanorth.github.io/cgspace-notes/2019-07/</link>

56
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@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
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<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
@ -74,6 +74,29 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54&#43;03:00">Mon Oct 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
@ -401,31 +424,6 @@ dspace.log.2018-01-02:34
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-12/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/" rel="prev" role="button">Previous page</a>
@ -450,16 +448,16 @@ dspace.log.2018-01-02:34
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

70
docs/tags/notes/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
@ -74,6 +74,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
@ -349,43 +374,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-02-07T07:04:52-08:00">Tue Feb 07, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-02-07">2017-02-07</h2>
<ul>
<li><p>An item was mapped twice erroneously again, so I had to remove one of the mappings manually:</p>
<pre><code>dspace=# select * from collection2item where item_id = '80278';
id | collection_id | item_id
-------+---------------+---------
92551 | 313 | 80278
92550 | 313 | 80278
90774 | 1051 | 80278
(3 rows)
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
DELETE 1
</code></pre></li>
<li><p>Create issue on GitHub to track the addition of CCAFS Phase II project tags (<a href="https://github.com/ilri/DSpace/issues/301">#301</a>)</p></li>
<li><p>Looks like we&rsquo;ll be using <code>cg.identifier.ccafsprojectpii</code> as the field name</p></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-02/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/2/" rel="prev" role="button">Previous page</a>
@ -410,16 +398,16 @@ DELETE 1
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

71
docs/tags/notes/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
@ -74,6 +74,43 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-02-07T07:04:52-08:00">Tue Feb 07, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-02-07">2017-02-07</h2>
<ul>
<li><p>An item was mapped twice erroneously again, so I had to remove one of the mappings manually:</p>
<pre><code>dspace=# select * from collection2item where item_id = '80278';
id | collection_id | item_id
-------+---------------+---------
92551 | 313 | 80278
92550 | 313 | 80278
90774 | 1051 | 80278
(3 rows)
dspace=# delete from collection2item where id = 92551 and item_id = 80278;
DELETE 1
</code></pre></li>
<li><p>Create issue on GitHub to track the addition of CCAFS Phase II project tags (<a href="https://github.com/ilri/DSpace/issues/301">#301</a>)</p></li>
<li><p>Looks like we&rsquo;ll be using <code>cg.identifier.ccafsprojectpii</code> as the field name</p></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-02/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-01/">January, 2017</a></h2>
@ -343,32 +380,6 @@ text_value
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-04-04T11:06:00&#43;03:00">Mon Apr 04, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-04-04">2016-04-04</h2>
<ul>
<li>Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit</li>
<li>We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc</li>
<li>After running DSpace for over five years I&rsquo;ve never needed to look in any other log file than dspace.log, leave alone one from last year!</li>
<li>This will save us a few gigs of backup space we&rsquo;re paying for on S3</li>
<li>Also, I noticed the <code>checker</code> log has some errors we should pay attention to:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-04/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/notes/page/3/" rel="prev" role="button">Previous page</a>
@ -393,16 +404,16 @@ text_value
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

34
docs/tags/notes/page/5/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/notes/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Notes"/>
@ -74,6 +74,32 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-04-04T11:06:00&#43;03:00">Mon Apr 04, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-04-04">2016-04-04</h2>
<ul>
<li>Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit</li>
<li>We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc</li>
<li>After running DSpace for over five years I&rsquo;ve never needed to look in any other log file than dspace.log, leave alone one from last year!</li>
<li>This will save us a few gigs of backup space we&rsquo;re paying for on S3</li>
<li>Also, I noticed the <code>checker</code> log has some errors we should pay attention to:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-04/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-03/">March, 2016</a></h2>
@ -234,16 +260,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

58
docs/tags/page/2/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,29 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-10/">October, 2018</a></h2>
<p class="blog-post-meta"><time datetime="2018-10-01T22:31:54&#43;03:00">Mon Oct 01, 2018</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2018-10-01">2018-10-01</h2>
<ul>
<li>Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items</li>
<li>I created a GitHub issue to track this <a href="https://github.com/ilri/DSpace/issues/389">#389</a>, because I&rsquo;m super busy in Nairobi right now</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2018-10/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-09/">September, 2018</a></h2>
@ -416,31 +439,6 @@ dspace.log.2018-01-02:34
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-12/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/" rel="prev" role="button">Previous page</a>
@ -465,16 +463,16 @@ dspace.log.2018-01-02:34
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

76
docs/tags/page/3/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,31 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-12/">December, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-12-01T13:53:54&#43;03:00">Fri Dec 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-12-01">2017-12-01</h2>
<ul>
<li>Uptime Robot noticed that CGSpace went down</li>
<li>The logs say &ldquo;Timeout waiting for idle object&rdquo;</li>
<li>PostgreSQL activity says there are 115 connections currently</li>
<li>The list of connections to XMLUI and REST API for today:</li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-12/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-11/">November, 2017</a></h2>
@ -341,47 +366,6 @@ COPY 54701
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-03-01T17:08:52&#43;02:00">Wed Mar 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-03-01">2017-03-01</h2>
<ul>
<li>Run the 279 CIAT author corrections on CGSpace</li>
</ul>
<h2 id="2017-03-02">2017-03-02</h2>
<ul>
<li>Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace</li>
<li>CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles</li>
<li>They might come in at the top level in one &ldquo;CGIAR System&rdquo; community, or with several communities</li>
<li>I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?</li>
<li>Need to send Peter and Michael some notes about this in a few days</li>
<li>Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI</li>
<li>Filed an issue on DSpace issue tracker for the <code>filter-media</code> bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: <a href="https://jira.duraspace.org/browse/DS-3516">DS-3516</a></li>
<li>Discovered that the ImageMagic <code>filter-media</code> plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK</li>
<li><p>Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing regeneration using DSpace 5.x&rsquo;s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see <a href="https://cgspace.cgiar.org/handle/10568/51999"><sup>10568</sup>&frasl;<sub>51999</sub></a>):</p>
<pre><code>$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-03/'>Read more →</a>
</article>
<nav class="blog-pagination">
<a class="btn btn-outline-primary" href="/cgspace-notes/tags/page/2/" rel="prev" role="button">Previous page</a>
@ -406,16 +390,16 @@ COPY 54701
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>

80
docs/tags/page/4/index.html
View File

@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,47 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-03/">March, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-03-01T17:08:52&#43;02:00">Wed Mar 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2017-03-01">2017-03-01</h2>
<ul>
<li>Run the 279 CIAT author corrections on CGSpace</li>
</ul>
<h2 id="2017-03-02">2017-03-02</h2>
<ul>
<li>Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace</li>
<li>CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles</li>
<li>They might come in at the top level in one &ldquo;CGIAR System&rdquo; community, or with several communities</li>
<li>I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?</li>
<li>Need to send Peter and Michael some notes about this in a few days</li>
<li>Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI</li>
<li>Filed an issue on DSpace issue tracker for the <code>filter-media</code> bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: <a href="https://jira.duraspace.org/browse/DS-3516">DS-3516</a></li>
<li>Discovered that the ImageMagic <code>filter-media</code> plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK</li>
<li><p>Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing regeneration using DSpace 5.x&rsquo;s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see <a href="https://cgspace.cgiar.org/handle/10568/51999"><sup>10568</sup>&frasl;<sub>51999</sub></a>):</p>
<pre><code>$ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2017-03/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-02/">February, 2017</a></h2>
@ -366,35 +407,6 @@ text_value
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00&#43;03:00">Sun May 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-05-01">2016-05-01</h2>
<ul>
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
<li>I have blocked access to the API now</li>
<li><p>There are 3,000 IPs accessing the REST API in a 24-hour period!</p>
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
3168
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
</article>
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@ -419,16 +431,16 @@ text_value
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
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@ -10,7 +10,7 @@
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/tags/" />
<meta property="og:updated_time" content="2019-07-01T12:13:51&#43;03:00"/>
<meta property="og:updated_time" content="2019-08-03T12:39:51&#43;03:00"/>
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="Tags"/>
@ -29,7 +29,7 @@
"@type": "Person",
"name": "Alan Orth"
},
"dateModified": "2019-07-01T12:13:51\x2b03:00",
"dateModified": "2019-08-03T12:39:51\x2b03:00",
"keywords": "notes,notes,",
"description": "Documenting day-to-day work on the [CGSpace](https:\/\/cgspace.cgiar.org) repository."
}
@ -89,6 +89,35 @@
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-05/">May, 2016</a></h2>
<p class="blog-post-meta"><time datetime="2016-05-01T23:06:00&#43;03:00">Sun May 01, 2016</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
</p>
</header>
<h2 id="2016-05-01">2016-05-01</h2>
<ul>
<li>Since yesterday there have been 10,000 REST errors and the site has been unstable again</li>
<li>I have blocked access to the API now</li>
<li><p>There are 3,000 IPs accessing the REST API in a 24-hour period!</p>
<pre><code># awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l
3168
</code></pre></li>
</ul>
<a href='https://alanorth.github.io/cgspace-notes/2016-05/'>Read more →</a>
</article>
<article class="blog-post">
<header>
<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2016-04/">April, 2016</a></h2>
@ -275,16 +304,16 @@
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-08/">August, 2019</a></li>
<li><a href="/cgspace-notes/posts/">Posts</a></li>
<li><a href="/cgspace-notes/2019-07/">July, 2019</a></li>
<li><a href="/cgspace-notes/2019-06/">June, 2019</a></li>
<li><a href="/cgspace-notes/2019-05/">May, 2019</a></li>
<li><a href="/cgspace-notes/2019-04/">April, 2019</a></li>
</ol>
</section>