Add notes for 2023-08-23

2024-11-22 06:35:03 +01:00 · 2023-08-24 09:03:46 +03:00 · 2023-08-24 09:03:46 +03:00 · 33061dbe3a
commit 33061dbe3a
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32 changed files with 100 additions and 37 deletions
--- a/content/posts/2023-08.md
+++ b/content/posts/2023-08.md
@ -172,5 +172,35 @@ $ ./run.sh -s http://localhost:8081/solr/statistics -a import -o /tmp/statistics
  - This time looking at the thumbnail responses in item endpoints
  - According to [the documentation](https://github.com/DSpace/RestContract/blob/main/items.md#main-thumbnail) the API will respond with HTTP 200 if there is a thumbnail, and HTTP 204 if there is no content
  - That means we need to make the request before we can even find out!
+- Tim on DSpace Slack pointed out the DSpace 7 REST API's [projections](https://github.com/DSpace/RestContract/blob/main/projections.md)
+  - This means we can embed resources like thumbnail and owningCollection in the item (and other) requests, for example: https://dspace7test.ilri.org/server/api/discover/search/objects?dsoType=item&embed=thumbnail,owningCollection
+
+## 2023-08-23
+
+- I benchmarked the DSpace 7 REST API with the new embeds and it took four hours and seventeen minutes to get all 106,000 items on DSpace 7 Test
+  - So this is much slower than the results I saw earlier this week, but maybe slightly faster than DSpace 6?
+- Maria from Alliance contacted me to say they have agreed to use UN M.49 regions more strictly in TIP, so they want to replace our non-standard "Latin America" region with "Latin America and the Caribbean", "Caribbean" and "Americas" on all Alliance outputs
+  - I exported their community on CGSpace and fixed the metadata in OpenRefine
+- I tried to run `dspace cleanup -v` on CGSpace, but got this error:
+
+```
+Caused by: org.postgresql.util.PSQLException: ERROR: update or delete on table "bitstream" violates foreign key constraint "bundle_primary_bitstream_id_fkey" on table "bundle"
+  Detail: Key (uuid)=(61bff7da-c8e3-420f-841c-ec5e8238d716) is still referenced from table "bundle".
+```
+
+- The solution, as always, is to delete those IDs manually in PostgreSQL:
+
+```
+$ psql -d dspace -c "UPDATE bundle SET primary_bitstream_id=NULL WHERE primary_bitstream_id IN ('61bff7da-c8e3-420f-841c-ec5e8238d716');"
+UPDATE 1
+```
+
+- I also tried to delete all users who haven't logged in since 2017 using the groomer script, but it crashes due to those users still having items or workflows or whatever:
+
+```console
+$ dspace dsrun org.dspace.eperson.Groomer -a -b 08/23/2017 -d
+```
+
+- I see that it is now [possible in DSpace 7 to delete such users](https://github.com/DSpace/DSpace/pull/2229) so we will have to wait

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--- a/docs/2023-08/index.html
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@ -19,7 +19,7 @@ Start working on some batch uploads for IFPRI
 <meta property="og:type" content="article" />
 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2023-08/" />
 <meta property="article:published_time" content="2023-08-03T11:18:36+03:00" />
-<meta property="article:modified_time" content="2023-08-18T23:54:07+03:00" />
+<meta property="article:modified_time" content="2023-08-22T17:28:49+03:00" />



@ -44,9 +44,9 @@ Start working on some batch uploads for IFPRI
  "@type": "BlogPosting",
  "headline": "August, 2023",
  "url": "https://alanorth.github.io/cgspace-notes/2023-08/",
-  "wordCount": "1254",
+  "wordCount": "1514",
  "datePublished": "2023-08-03T11:18:36+03:00",
-  "dateModified": "2023-08-18T23:54:07+03:00",
+  "dateModified": "2023-08-22T17:28:49+03:00",
  "author": {
    "@type": "Person",
    "name": "Alan Orth"
@ -322,6 +322,39 @@ Start working on some batch uploads for IFPRI
 <li>That means we need to make the request before we can even find out!</li>
 </ul>
 </li>
+<li>Tim on DSpace Slack pointed out the DSpace 7 REST API&rsquo;s <a href="https://github.com/DSpace/RestContract/blob/main/projections.md">projections</a>
+<ul>
+<li>This means we can embed resources like thumbnail and owningCollection in the item (and other) requests, for example: <a href="https://dspace7test.ilri.org/server/api/discover/search/objects?dsoType=item&amp;embed=thumbnail,owningCollection">https://dspace7test.ilri.org/server/api/discover/search/objects?dsoType=item&amp;embed=thumbnail,owningCollection</a></li>
+</ul>
+</li>
+</ul>
+<h2 id="2023-08-23">2023-08-23</h2>
+<ul>
+<li>I benchmarked the DSpace 7 REST API with the new embeds and it took four hours and seventeen minutes to get all 106,000 items on DSpace 7 Test
+<ul>
+<li>So this is much slower than the results I saw earlier this week, but maybe slightly faster than DSpace 6?</li>
+</ul>
+</li>
+<li>Maria from Alliance contacted me to say they have agreed to use UN M.49 regions more strictly in TIP, so they want to replace our non-standard &ldquo;Latin America&rdquo; region with &ldquo;Latin America and the Caribbean&rdquo;, &ldquo;Caribbean&rdquo; and &ldquo;Americas&rdquo; on all Alliance outputs
+<ul>
+<li>I exported their community on CGSpace and fixed the metadata in OpenRefine</li>
+</ul>
+</li>
+<li>I tried to run <code>dspace cleanup -v</code> on CGSpace, but got this error:</li>
+</ul>
+<pre tabindex="0"><code>Caused by: org.postgresql.util.PSQLException: ERROR: update or delete on table &#34;bitstream&#34; violates foreign key constraint &#34;bundle_primary_bitstream_id_fkey&#34; on table &#34;bundle&#34;
+  Detail: Key (uuid)=(61bff7da-c8e3-420f-841c-ec5e8238d716) is still referenced from table &#34;bundle&#34;.
+</code></pre><ul>
+<li>The solution, as always, is to delete those IDs manually in PostgreSQL:</li>
+</ul>
+<pre tabindex="0"><code>$ psql -d dspace -c &#34;UPDATE bundle SET primary_bitstream_id=NULL WHERE primary_bitstream_id IN (&#39;61bff7da-c8e3-420f-841c-ec5e8238d716&#39;);&#34;
+UPDATE 1
+</code></pre><ul>
+<li>I also tried to delete all users who haven&rsquo;t logged in since 2017 using the groomer script, but it crashes due to those users still having items or workflows or whatever:</li>
+</ul>
+<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ dspace dsrun org.dspace.eperson.Groomer -a -b 08/23/2017 -d
+</span></span></code></pre></div><ul>
+<li>I see that it is now <a href="https://github.com/DSpace/DSpace/pull/2229">possible in DSpace 7 to delete such users</a> so we will have to wait</li>
 </ul>
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