mirror of
https://github.com/alanorth/cgspace-notes.git
synced 2025-01-27 05:49:12 +01:00
Add notes for 2022-03-04
This commit is contained in:
@ -60,7 +60,7 @@ $ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty
|
||||
}
|
||||
}
|
||||
"/>
|
||||
<meta name="generator" content="Hugo 0.92.2" />
|
||||
<meta name="generator" content="Hugo 0.93.1" />
|
||||
|
||||
|
||||
|
||||
@ -157,34 +157,34 @@ $ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty
|
||||
<li>I had a call with CodeObia to discuss the work on OpenRXV</li>
|
||||
<li>Check the results of the AReS harvesting from last night:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span>
|
||||
{
|
||||
"count" : 100875,
|
||||
"_shards" : {
|
||||
"total" : 1,
|
||||
"successful" : 1,
|
||||
"skipped" : 0,
|
||||
"failed" : 0
|
||||
}
|
||||
}
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span>
|
||||
</span></span><span style="display:flex;"><span>{
|
||||
</span></span><span style="display:flex;"><span> "count" : 100875,
|
||||
</span></span><span style="display:flex;"><span> "_shards" : {
|
||||
</span></span><span style="display:flex;"><span> "total" : 1,
|
||||
</span></span><span style="display:flex;"><span> "successful" : 1,
|
||||
</span></span><span style="display:flex;"><span> "skipped" : 0,
|
||||
</span></span><span style="display:flex;"><span> "failed" : 0
|
||||
</span></span><span style="display:flex;"><span> }
|
||||
</span></span><span style="display:flex;"><span>}
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Set the current items index to read only and make a backup:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">' {"settings": {"index.blocks.write":true}}'</span>
|
||||
$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-02-01
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">' {"settings": {"index.blocks.write":true}}'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-02-01
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Delete the current items index and clone the temp one to it:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items'</span>
|
||||
$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items-temp/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">'{"settings": {"index.blocks.write": true}}'</span>
|
||||
$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items-temp/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">'{"settings": {"index.blocks.write": true}}'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Then delete the temp and backup:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
{"acknowledged":true}%
|
||||
$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-2021-02-01'</span>
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
</span></span><span style="display:flex;"><span>{"acknowledged":true}%
|
||||
</span></span><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-2021-02-01'</span>
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Meeting with Peter and Abenet about CGSpace goals and progress</li>
|
||||
<li>Test submission to DSpace via REST API to see if Abenet can fix / reject it (submit workflow?)</li>
|
||||
<li>Get Peter a list of users who have submitted or approved on DSpace everrrrrrr, so he can remove some</li>
|
||||
@ -196,25 +196,25 @@ $ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-i
|
||||
</li>
|
||||
<li>I tried to export the ILRI community from CGSpace but I got an error:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ dspace metadata-export -i 10568/1 -f /tmp/2021-02-01-ILRI.csv
|
||||
Loading @mire database changes for module MQM
|
||||
Changes have been processed
|
||||
Exporting community 'International Livestock Research Institute (ILRI)' (10568/1)
|
||||
Exception: null
|
||||
java.lang.NullPointerException
|
||||
at com.google.common.base.Preconditions.checkNotNull(Preconditions.java:212)
|
||||
at com.google.common.collect.Iterators.concat(Iterators.java:464)
|
||||
at org.dspace.app.bulkedit.MetadataExport.addItemsToResult(MetadataExport.java:136)
|
||||
at org.dspace.app.bulkedit.MetadataExport.buildFromCommunity(MetadataExport.java:125)
|
||||
at org.dspace.app.bulkedit.MetadataExport.<init>(MetadataExport.java:77)
|
||||
at org.dspace.app.bulkedit.MetadataExport.main(MetadataExport.java:282)
|
||||
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
|
||||
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
|
||||
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
|
||||
at java.lang.reflect.Method.invoke(Method.java:498)
|
||||
at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229)
|
||||
at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81)
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ dspace metadata-export -i 10568/1 -f /tmp/2021-02-01-ILRI.csv
|
||||
</span></span><span style="display:flex;"><span>Loading @mire database changes for module MQM
|
||||
</span></span><span style="display:flex;"><span>Changes have been processed
|
||||
</span></span><span style="display:flex;"><span>Exporting community 'International Livestock Research Institute (ILRI)' (10568/1)
|
||||
</span></span><span style="display:flex;"><span> Exception: null
|
||||
</span></span><span style="display:flex;"><span>java.lang.NullPointerException
|
||||
</span></span><span style="display:flex;"><span> at com.google.common.base.Preconditions.checkNotNull(Preconditions.java:212)
|
||||
</span></span><span style="display:flex;"><span> at com.google.common.collect.Iterators.concat(Iterators.java:464)
|
||||
</span></span><span style="display:flex;"><span> at org.dspace.app.bulkedit.MetadataExport.addItemsToResult(MetadataExport.java:136)
|
||||
</span></span><span style="display:flex;"><span> at org.dspace.app.bulkedit.MetadataExport.buildFromCommunity(MetadataExport.java:125)
|
||||
</span></span><span style="display:flex;"><span> at org.dspace.app.bulkedit.MetadataExport.<init>(MetadataExport.java:77)
|
||||
</span></span><span style="display:flex;"><span> at org.dspace.app.bulkedit.MetadataExport.main(MetadataExport.java:282)
|
||||
</span></span><span style="display:flex;"><span> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
|
||||
</span></span><span style="display:flex;"><span> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
|
||||
</span></span><span style="display:flex;"><span> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
|
||||
</span></span><span style="display:flex;"><span> at java.lang.reflect.Method.invoke(Method.java:498)
|
||||
</span></span><span style="display:flex;"><span> at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229)
|
||||
</span></span><span style="display:flex;"><span> at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81)
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>I imported the production database to my local development environment and I get the same error… WTF is this?
|
||||
<ul>
|
||||
<li>I was able to export another smaller community</li>
|
||||
@ -234,28 +234,28 @@ java.lang.NullPointerException
|
||||
<li>Maria Garruccio sent me some new ORCID iDs for Bioversity authors, as well as a correction for Stefan Burkart’s iD</li>
|
||||
<li>I saved the new ones to a text file, combined them with the others, extracted the ORCID iDs themselves, and updated the names using <code>resolve-orcids.py</code>:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ cat ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-id.xml /tmp/bioversity-orcid-ids.txt | grep -oE <span style="color:#e6db74">'[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}'</span> | sort | uniq > /tmp/2021-02-02-combined-orcids.txt
|
||||
$ ./ilri/resolve-orcids.py -i /tmp/2021-02-02-combined-orcids.txt -o /tmp/2021-02-02-combined-orcid-names.txt
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ cat ~/src/git/DSpace/dspace/config/controlled-vocabularies/cg-creator-id.xml /tmp/bioversity-orcid-ids.txt | grep -oE <span style="color:#e6db74">'[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}'</span> | sort | uniq > /tmp/2021-02-02-combined-orcids.txt
|
||||
</span></span><span style="display:flex;"><span>$ ./ilri/resolve-orcids.py -i /tmp/2021-02-02-combined-orcids.txt -o /tmp/2021-02-02-combined-orcid-names.txt
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>I sorted the names and added the XML formatting in vim, then ran it through tidy:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ tidy -xml -utf8 -m -iq -w <span style="color:#ae81ff">0</span> dspace/config/controlled-vocabularies/cg-creator-id.xml
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ tidy -xml -utf8 -m -iq -w <span style="color:#ae81ff">0</span> dspace/config/controlled-vocabularies/cg-creator-id.xml
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Then I added all the changed names plus Stefan’s incorrect ones to a CSV and processed them with <code>fix-metadata-values.py</code>:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ cat 2021-02-02-fix-orcid-ids.csv
|
||||
cg.creator.id,correct
|
||||
Burkart Stefan: 0000-0001-5297-2184,Stefan Burkart: 0000-0001-5297-2184
|
||||
Burkart Stefan: 0000-0002-7558-9177,Stefan Burkart: 0000-0001-5297-2184
|
||||
Stefan Burkart: 0000-0001-5297-2184,Stefan Burkart: 0000-0001-5297-2184
|
||||
Stefan Burkart: 0000-0002-7558-9177,Stefan Burkart: 0000-0001-5297-2184
|
||||
Adina Chain Guadarrama: 0000-0002-6944-2064,Adina Chain-Guadarrama: 0000-0002-6944-2064
|
||||
Bedru: 0000-0002-7344-5743,Bedru B. Balana: 0000-0002-7344-5743
|
||||
Leigh Winowiecki: 0000-0001-5572-1284,Leigh Ann Winowiecki: 0000-0001-5572-1284
|
||||
Sander J. Zwart: 0000-0002-5091-1801,Sander Zwart: 0000-0002-5091-1801
|
||||
saul lozano-fuentes: 0000-0003-1517-6853,Saul Lozano: 0000-0003-1517-6853
|
||||
$ ./ilri/fix-metadata-values.py -i 2021-02-02-fix-orcid-ids.csv -db dspace63 -u dspace -p <span style="color:#e6db74">'fuuu'</span> -f cg.creator.id -t <span style="color:#e6db74">'correct'</span> -m <span style="color:#ae81ff">240</span>
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ cat 2021-02-02-fix-orcid-ids.csv
|
||||
</span></span><span style="display:flex;"><span>cg.creator.id,correct
|
||||
</span></span><span style="display:flex;"><span>Burkart Stefan: 0000-0001-5297-2184,Stefan Burkart: 0000-0001-5297-2184
|
||||
</span></span><span style="display:flex;"><span>Burkart Stefan: 0000-0002-7558-9177,Stefan Burkart: 0000-0001-5297-2184
|
||||
</span></span><span style="display:flex;"><span>Stefan Burkart: 0000-0001-5297-2184,Stefan Burkart: 0000-0001-5297-2184
|
||||
</span></span><span style="display:flex;"><span>Stefan Burkart: 0000-0002-7558-9177,Stefan Burkart: 0000-0001-5297-2184
|
||||
</span></span><span style="display:flex;"><span>Adina Chain Guadarrama: 0000-0002-6944-2064,Adina Chain-Guadarrama: 0000-0002-6944-2064
|
||||
</span></span><span style="display:flex;"><span>Bedru: 0000-0002-7344-5743,Bedru B. Balana: 0000-0002-7344-5743
|
||||
</span></span><span style="display:flex;"><span>Leigh Winowiecki: 0000-0001-5572-1284,Leigh Ann Winowiecki: 0000-0001-5572-1284
|
||||
</span></span><span style="display:flex;"><span>Sander J. Zwart: 0000-0002-5091-1801,Sander Zwart: 0000-0002-5091-1801
|
||||
</span></span><span style="display:flex;"><span>saul lozano-fuentes: 0000-0003-1517-6853,Saul Lozano: 0000-0003-1517-6853
|
||||
</span></span><span style="display:flex;"><span>$ ./ilri/fix-metadata-values.py -i 2021-02-02-fix-orcid-ids.csv -db dspace63 -u dspace -p <span style="color:#e6db74">'fuuu'</span> -f cg.creator.id -t <span style="color:#e6db74">'correct'</span> -m <span style="color:#ae81ff">240</span>
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>I also looked up which of these new authors might have existing items that are missing ORCID iDs</li>
|
||||
<li>I had to port my <code>add-orcid-identifiers-csv.py</code> to DSpace 6 UUIDs and I think it’s working but I want to do a few more tests because it uses a sequence for the metadata_value_id</li>
|
||||
</ul>
|
||||
@ -263,23 +263,23 @@ $ ./ilri/fix-metadata-values.py -i 2021-02-02-fix-orcid-ids.csv -db dspace63 -u
|
||||
<ul>
|
||||
<li>Tag forty-three items from Bioversity’s new authors with ORCID iDs using <code>add-orcid-identifiers-csv.py</code>:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ cat /tmp/2021-02-02-add-orcid-ids.csv
|
||||
dc.contributor.author,cg.creator.id
|
||||
"Nchanji, E.",Eileen Bogweh Nchanji: 0000-0002-6859-0962
|
||||
"Nchanji, Eileen",Eileen Bogweh Nchanji: 0000-0002-6859-0962
|
||||
"Nchanji, Eileen Bogweh",Eileen Bogweh Nchanji: 0000-0002-6859-0962
|
||||
"Machida, Lewis",Lewis Machida: 0000-0002-0012-3997
|
||||
"Mockshell, Jonathan",Jonathan Mockshell: 0000-0003-1990-6657"
|
||||
"Aubert, C.",Celine Aubert: 0000-0001-6284-4821
|
||||
"Aubert, Céline",Celine Aubert: 0000-0001-6284-4821
|
||||
"Devare, M.",Medha Devare: 0000-0003-0041-4812
|
||||
"Devare, Medha",Medha Devare: 0000-0003-0041-4812
|
||||
"Benites-Alfaro, O.E.",Omar E. Benites-Alfaro: 0000-0002-6852-9598
|
||||
"Benites-Alfaro, Omar Eduardo",Omar E. Benites-Alfaro: 0000-0002-6852-9598
|
||||
"Johnson, Vincent",VINCENT JOHNSON: 0000-0001-7874-178X
|
||||
"Lesueur, Didier",didier lesueur: 0000-0002-6694-0869
|
||||
$ ./ilri/add-orcid-identifiers-csv.py -i /tmp/2021-02-02-add-orcid-ids.csv -db dspace -u dspace -p <span style="color:#e6db74">'fuuu'</span> -d
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ cat /tmp/2021-02-02-add-orcid-ids.csv
|
||||
</span></span><span style="display:flex;"><span>dc.contributor.author,cg.creator.id
|
||||
</span></span><span style="display:flex;"><span>"Nchanji, E.",Eileen Bogweh Nchanji: 0000-0002-6859-0962
|
||||
</span></span><span style="display:flex;"><span>"Nchanji, Eileen",Eileen Bogweh Nchanji: 0000-0002-6859-0962
|
||||
</span></span><span style="display:flex;"><span>"Nchanji, Eileen Bogweh",Eileen Bogweh Nchanji: 0000-0002-6859-0962
|
||||
</span></span><span style="display:flex;"><span>"Machida, Lewis",Lewis Machida: 0000-0002-0012-3997
|
||||
</span></span><span style="display:flex;"><span>"Mockshell, Jonathan",Jonathan Mockshell: 0000-0003-1990-6657"
|
||||
</span></span><span style="display:flex;"><span>"Aubert, C.",Celine Aubert: 0000-0001-6284-4821
|
||||
</span></span><span style="display:flex;"><span>"Aubert, Céline",Celine Aubert: 0000-0001-6284-4821
|
||||
</span></span><span style="display:flex;"><span>"Devare, M.",Medha Devare: 0000-0003-0041-4812
|
||||
</span></span><span style="display:flex;"><span>"Devare, Medha",Medha Devare: 0000-0003-0041-4812
|
||||
</span></span><span style="display:flex;"><span>"Benites-Alfaro, O.E.",Omar E. Benites-Alfaro: 0000-0002-6852-9598
|
||||
</span></span><span style="display:flex;"><span>"Benites-Alfaro, Omar Eduardo",Omar E. Benites-Alfaro: 0000-0002-6852-9598
|
||||
</span></span><span style="display:flex;"><span>"Johnson, Vincent",VINCENT JOHNSON: 0000-0001-7874-178X
|
||||
</span></span><span style="display:flex;"><span>"Lesueur, Didier",didier lesueur: 0000-0002-6694-0869
|
||||
</span></span><span style="display:flex;"><span>$ ./ilri/add-orcid-identifiers-csv.py -i /tmp/2021-02-02-add-orcid-ids.csv -db dspace -u dspace -p <span style="color:#e6db74">'fuuu'</span> -d
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>I’m working on the CGSpace accession for Karl Rich’s <a href="https://github.com/ilri/vietnam-pig-model-2018">Viet Nam Pig Model 2018</a> and I noticed his ORCID iD is missing from CGSpace
|
||||
<ul>
|
||||
<li>I added it and tagged 141 items of his with the iD</li>
|
||||
@ -300,9 +300,9 @@ $ ./ilri/add-orcid-identifiers-csv.py -i /tmp/2021-02-02-add-orcid-ids.csv -db d
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ time chrt -b <span style="color:#ae81ff">0</span> dspace index-discovery -b
|
||||
$ dspace oai import -c
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ time chrt -b <span style="color:#ae81ff">0</span> dspace index-discovery -b
|
||||
</span></span><span style="display:flex;"><span>$ dspace oai import -c
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Attend Accenture meeting for repository managers
|
||||
<ul>
|
||||
<li>Not clear what the SMO wants to get out of us</li>
|
||||
@ -333,8 +333,8 @@ $ dspace oai import -c
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ ./ilri/delete-metadata-values.py -i /tmp/2020-10-28-Series-PB.csv -db dspace -u dspace -p <span style="color:#e6db74">'fuuu'</span> -f dc.relation.ispartofseries -m <span style="color:#ae81ff">43</span>
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/delete-metadata-values.py -i /tmp/2020-10-28-Series-PB.csv -db dspace -u dspace -p <span style="color:#e6db74">'fuuu'</span> -f dc.relation.ispartofseries -m <span style="color:#ae81ff">43</span>
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>The corrected versions have a lot of encoding issues so I asked Peter to give me the correct ones so I can search/replace them:
|
||||
<ul>
|
||||
<li>CIAT Publicaçao</li>
|
||||
@ -358,8 +358,8 @@ $ dspace oai import -c
|
||||
<li>I ended up using <a href="https://github.com/LuminosoInsight/python-ftfy">python-ftfy</a> to fix those very easily, then replaced them in the CSV</li>
|
||||
<li>Then I trimmed whitespace at the beginning, end, and around the “;”, and applied the 1,600 fixes using <code>fix-metadata-values.py</code>:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ ./ilri/fix-metadata-values.py -i /tmp/2020-10-28-Series-PB.csv -db dspace -u dspace -p <span style="color:#e6db74">'fuuu'</span> -f dc.relation.ispartofseries -t <span style="color:#e6db74">'correct'</span> -m <span style="color:#ae81ff">43</span>
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/fix-metadata-values.py -i /tmp/2020-10-28-Series-PB.csv -db dspace -u dspace -p <span style="color:#e6db74">'fuuu'</span> -f dc.relation.ispartofseries -t <span style="color:#e6db74">'correct'</span> -m <span style="color:#ae81ff">43</span>
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Help Peter debug an issue with one of Alan Duncan’s new FEAST Data reports on CGSpace
|
||||
<ul>
|
||||
<li>For some reason the default policy for the item was “COLLECTION_492_DEFAULT_READ” group, which had zero members</li>
|
||||
@ -372,12 +372,12 @@ $ dspace oai import -c
|
||||
<li>Run system updates on CGSpace (linode18), deploy latest 6_x-prod branch, and reboot the server</li>
|
||||
<li>After the server came back up I started a full Discovery re-indexing:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ time chrt -b <span style="color:#ae81ff">0</span> ionice -c2 -n7 nice -n19 dspace index-discovery -b
|
||||
<span style="color:#960050;background-color:#1e0010">
|
||||
</span><span style="color:#960050;background-color:#1e0010"></span>real 247m30.850s
|
||||
user 160m36.657s
|
||||
sys 2m26.050s
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ time chrt -b <span style="color:#ae81ff">0</span> ionice -c2 -n7 nice -n19 dspace index-discovery -b
|
||||
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
|
||||
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>real 247m30.850s
|
||||
</span></span><span style="display:flex;"><span>user 160m36.657s
|
||||
</span></span><span style="display:flex;"><span>sys 2m26.050s
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Regarding the CG Core v2 migration, Fabio wrote to tell me that he is not using CGSpace directly, instead harvesting via GARDIAN
|
||||
<ul>
|
||||
<li>He gave me the contact of Sotiris Konstantinidis, who is the CTO at SCIO Systems and works on the GARDIAN platform</li>
|
||||
@ -385,30 +385,30 @@ sys 2m26.050s
|
||||
</li>
|
||||
<li>Delete the old Elasticsearch temp index to prepare for starting an AReS re-harvest:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
# start indexing in AReS
|
||||
</code></pre></div><h2 id="2021-02-08">2021-02-08</h2>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
</span></span><span style="display:flex;"><span># start indexing in AReS
|
||||
</span></span></code></pre></div><h2 id="2021-02-08">2021-02-08</h2>
|
||||
<ul>
|
||||
<li>Finish rotating the AReS indexes after the harvesting last night:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span>
|
||||
{
|
||||
"count" : 100983,
|
||||
"_shards" : {
|
||||
"total" : 1,
|
||||
"successful" : 1,
|
||||
"skipped" : 0,
|
||||
"failed" : 0
|
||||
}
|
||||
}
|
||||
$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">'{"settings": {"index.blocks.write":true}}'</span>
|
||||
$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-02-08
|
||||
$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items'</span>
|
||||
$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items-temp/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">'{"settings": {"index.blocks.write": true}}'</span>
|
||||
$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
|
||||
$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-2021-02-08'</span>
|
||||
</code></pre></div><h2 id="2021-02-10">2021-02-10</h2>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span>
|
||||
</span></span><span style="display:flex;"><span>{
|
||||
</span></span><span style="display:flex;"><span> "count" : 100983,
|
||||
</span></span><span style="display:flex;"><span> "_shards" : {
|
||||
</span></span><span style="display:flex;"><span> "total" : 1,
|
||||
</span></span><span style="display:flex;"><span> "successful" : 1,
|
||||
</span></span><span style="display:flex;"><span> "skipped" : 0,
|
||||
</span></span><span style="display:flex;"><span> "failed" : 0
|
||||
</span></span><span style="display:flex;"><span> }
|
||||
</span></span><span style="display:flex;"><span>}
|
||||
</span></span><span style="display:flex;"><span>$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">'{"settings": {"index.blocks.write":true}}'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-02-08
|
||||
</span></span><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items-temp/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">'{"settings": {"index.blocks.write": true}}'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
|
||||
</span></span><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-2021-02-08'</span>
|
||||
</span></span></code></pre></div><h2 id="2021-02-10">2021-02-10</h2>
|
||||
<ul>
|
||||
<li>Talk to Abdullah from CodeObia about a few of the issues we filed on OpenRXV
|
||||
<ul>
|
||||
@ -429,22 +429,22 @@ $ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-i
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ csvcut -c id /tmp/2021-02-10-ILRI.csv | sed <span style="color:#e6db74">'1d'</span> | wc -l
|
||||
30354
|
||||
$ csvcut -c id /tmp/2021-02-10-ILRI.csv | sed <span style="color:#e6db74">'1d'</span> | sort -u | wc -l
|
||||
18555
|
||||
$ csvcut -c id /tmp/2021-02-10-ILRI.csv | sed <span style="color:#e6db74">'1d'</span> | sort | uniq -c | sort -h | tail
|
||||
5 c21a79e5-e24e-4861-aa07-e06703d1deb7
|
||||
5 c2460aa1-ae28-4003-9a99-2d7c5cd7fd38
|
||||
5 d73fb3ae-9fac-4f7e-990f-e394f344246c
|
||||
5 dc0e24fa-b7f5-437e-ac09-e15c0704be00
|
||||
5 dc50bcca-0abf-473f-8770-69d5ab95cc33
|
||||
5 e714bdf9-cc0f-4d9a-a808-d572e25c9238
|
||||
6 7dfd1c61-9e8c-4677-8d41-e1c4b11d867d
|
||||
6 fb76888c-03ae-4d53-b27d-87d7ca91371a
|
||||
6 ff42d1e6-c489-492c-a40a-803cabd901ed
|
||||
7 094e9e1d-09ff-40ca-a6b9-eca580936147
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ csvcut -c id /tmp/2021-02-10-ILRI.csv | sed <span style="color:#e6db74">'1d'</span> | wc -l
|
||||
</span></span><span style="display:flex;"><span>30354
|
||||
</span></span><span style="display:flex;"><span>$ csvcut -c id /tmp/2021-02-10-ILRI.csv | sed <span style="color:#e6db74">'1d'</span> | sort -u | wc -l
|
||||
</span></span><span style="display:flex;"><span>18555
|
||||
</span></span><span style="display:flex;"><span>$ csvcut -c id /tmp/2021-02-10-ILRI.csv | sed <span style="color:#e6db74">'1d'</span> | sort | uniq -c | sort -h | tail
|
||||
</span></span><span style="display:flex;"><span> 5 c21a79e5-e24e-4861-aa07-e06703d1deb7
|
||||
</span></span><span style="display:flex;"><span> 5 c2460aa1-ae28-4003-9a99-2d7c5cd7fd38
|
||||
</span></span><span style="display:flex;"><span> 5 d73fb3ae-9fac-4f7e-990f-e394f344246c
|
||||
</span></span><span style="display:flex;"><span> 5 dc0e24fa-b7f5-437e-ac09-e15c0704be00
|
||||
</span></span><span style="display:flex;"><span> 5 dc50bcca-0abf-473f-8770-69d5ab95cc33
|
||||
</span></span><span style="display:flex;"><span> 5 e714bdf9-cc0f-4d9a-a808-d572e25c9238
|
||||
</span></span><span style="display:flex;"><span> 6 7dfd1c61-9e8c-4677-8d41-e1c4b11d867d
|
||||
</span></span><span style="display:flex;"><span> 6 fb76888c-03ae-4d53-b27d-87d7ca91371a
|
||||
</span></span><span style="display:flex;"><span> 6 ff42d1e6-c489-492c-a40a-803cabd901ed
|
||||
</span></span><span style="display:flex;"><span> 7 094e9e1d-09ff-40ca-a6b9-eca580936147
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>I added a comment to that bug to ask if this is a side effect of the patch</li>
|
||||
<li>I started working on tagging pre-2010 ILRI items with license information, like we talked about with Peter and Abenet last week
|
||||
<ul>
|
||||
@ -452,23 +452,23 @@ $ csvcut -c id /tmp/2021-02-10-ILRI.csv | sed <span style="color:#e6db74">'1
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ csvcut -c <span style="color:#e6db74">'id,dc.date.issued,dc.date.issued[],dc.date.issued[en_US],dc.rights,dc.rights[],dc.rights[en],dc.rights[en_US],dc.publisher,dc.publisher[],dc.publisher[en_US],dc.type[en_US]'</span> /tmp/2021-02-10-ILRI.csv | csvgrep -c <span style="color:#e6db74">'dc.type[en_US]'</span> -r <span style="color:#e6db74">'^.+[^(Journal Item|Journal Article|Book|Book Chapter)]'</span>
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ csvcut -c <span style="color:#e6db74">'id,dc.date.issued,dc.date.issued[],dc.date.issued[en_US],dc.rights,dc.rights[],dc.rights[en],dc.rights[en_US],dc.publisher,dc.publisher[],dc.publisher[en_US],dc.type[en_US]'</span> /tmp/2021-02-10-ILRI.csv | csvgrep -c <span style="color:#e6db74">'dc.type[en_US]'</span> -r <span style="color:#e6db74">'^.+[^(Journal Item|Journal Article|Book|Book Chapter)]'</span>
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>I imported the CSV into OpenRefine and converted the date text values to date types so I could facet by dates before 2010:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">if(diff(value,"01/01/2010".toDate(),"days")<0, true, false)
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>if(diff(value,"01/01/2010".toDate(),"days")<0, true, false)
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Then I filtered by publisher to make sure they were only ours:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">or(
|
||||
value.contains("International Livestock Research Institute"),
|
||||
value.contains("ILRI"),
|
||||
value.contains("International Livestock Centre for Africa"),
|
||||
value.contains("ILCA"),
|
||||
value.contains("ILRAD"),
|
||||
value.contains("International Laboratory for Research on Animal Diseases")
|
||||
)
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>or(
|
||||
</span></span><span style="display:flex;"><span> value.contains("International Livestock Research Institute"),
|
||||
</span></span><span style="display:flex;"><span> value.contains("ILRI"),
|
||||
</span></span><span style="display:flex;"><span> value.contains("International Livestock Centre for Africa"),
|
||||
</span></span><span style="display:flex;"><span> value.contains("ILCA"),
|
||||
</span></span><span style="display:flex;"><span> value.contains("ILRAD"),
|
||||
</span></span><span style="display:flex;"><span> value.contains("International Laboratory for Research on Animal Diseases")
|
||||
</span></span><span style="display:flex;"><span>)
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>I tagged these pre-2010 items with “Other” if they didn’t already have a license</li>
|
||||
<li>I checked 2010 to 2015, and 2016 to date, but they were all tagged already!</li>
|
||||
<li>In the end I added the “Other” license to 1,523 items from before 2010</li>
|
||||
@ -496,7 +496,7 @@ $ csvcut -c id /tmp/2021-02-10-ILRI.csv | sed <span style="color:#e6db74">'1
|
||||
en | 7601
|
||||
| 0
|
||||
(4 rows)
|
||||
dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE dspace_object_id IN (SELECT uuid FROM item);
|
||||
dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE dspace_object_id IN (SELECT uuid FROM item);
|
||||
</code></pre><ul>
|
||||
<li>Start a full Discovery re-indexing on CGSpace</li>
|
||||
</ul>
|
||||
@ -504,8 +504,8 @@ dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE dspace_object_id IN (S
|
||||
<ul>
|
||||
<li>Clear the OpenRXV temp items index:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Then start a full harvesting of CGSpace in the AReS Explorer admin dashboard</li>
|
||||
<li>Peter asked me about a few other recently submitted FEAST items that are restricted
|
||||
<ul>
|
||||
@ -521,35 +521,35 @@ dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE dspace_object_id IN (S
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ ./ilri/move-metadata-values.py -i /tmp/move.txt -db dspace -u dspace -p <span style="color:#e6db74">'fuuu'</span> -f <span style="color:#ae81ff">43</span> -t <span style="color:#ae81ff">55</span>
|
||||
</code></pre></div><h2 id="2021-02-15">2021-02-15</h2>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/move-metadata-values.py -i /tmp/move.txt -db dspace -u dspace -p <span style="color:#e6db74">'fuuu'</span> -f <span style="color:#ae81ff">43</span> -t <span style="color:#ae81ff">55</span>
|
||||
</span></span></code></pre></div><h2 id="2021-02-15">2021-02-15</h2>
|
||||
<ul>
|
||||
<li>Check the results of the AReS Harvesting from last night:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span>
|
||||
{
|
||||
"count" : 101126,
|
||||
"_shards" : {
|
||||
"total" : 1,
|
||||
"successful" : 1,
|
||||
"skipped" : 0,
|
||||
"failed" : 0
|
||||
}
|
||||
}
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span>
|
||||
</span></span><span style="display:flex;"><span>{
|
||||
</span></span><span style="display:flex;"><span> "count" : 101126,
|
||||
</span></span><span style="display:flex;"><span> "_shards" : {
|
||||
</span></span><span style="display:flex;"><span> "total" : 1,
|
||||
</span></span><span style="display:flex;"><span> "successful" : 1,
|
||||
</span></span><span style="display:flex;"><span> "skipped" : 0,
|
||||
</span></span><span style="display:flex;"><span> "failed" : 0
|
||||
</span></span><span style="display:flex;"><span> }
|
||||
</span></span><span style="display:flex;"><span>}
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Set the current items index to read only and make a backup:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">' {"settings": {"index.blocks.write":true}}'</span>
|
||||
$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-02-15
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">' {"settings": {"index.blocks.write":true}}'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-02-15
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Delete the current items index and clone the temp one:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items'</span>
|
||||
$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items-temp/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">'{"settings": {"index.blocks.write": true}}'</span>
|
||||
$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
|
||||
$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-2021-02-15'</span>
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items-temp/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">'{"settings": {"index.blocks.write": true}}'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
|
||||
</span></span><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-2021-02-15'</span>
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Call with Abdullah from CodeObia to discuss community and collection statistics reporting</li>
|
||||
</ul>
|
||||
<h2 id="2021-02-16">2021-02-16</h2>
|
||||
@ -563,49 +563,49 @@ $ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-i
|
||||
</li>
|
||||
<li>They are definitely bots posing as users, as I see they have created six thousand DSpace sessions today:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ cat dspace.log.2021-02-16 | grep -E <span style="color:#e6db74">'session_id=[A-Z0-9]{32}:ip_addr=45.146.165.203'</span> | sort | uniq | wc -l
|
||||
4007
|
||||
$ cat dspace.log.2021-02-16 | grep -E <span style="color:#e6db74">'session_id=[A-Z0-9]{32}:ip_addr=130.255.161.231'</span> | sort | uniq | wc -l
|
||||
2128
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ cat dspace.log.2021-02-16 | grep -E <span style="color:#e6db74">'session_id=[A-Z0-9]{32}:ip_addr=45.146.165.203'</span> | sort | uniq | wc -l
|
||||
</span></span><span style="display:flex;"><span>4007
|
||||
</span></span><span style="display:flex;"><span>$ cat dspace.log.2021-02-16 | grep -E <span style="color:#e6db74">'session_id=[A-Z0-9]{32}:ip_addr=130.255.161.231'</span> | sort | uniq | wc -l
|
||||
</span></span><span style="display:flex;"><span>2128
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Ah, actually 45.146.165.203 is making requests like this:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">"http://cgspace.cgiar.org:80/bitstream/handle/10568/238/Res_report_no3.pdf;jsessionid=7311DD88B30EEF9A8F526FF89378C2C5%' AND 4313=CONCAT(CHAR(113)+CHAR(98)+CHAR(106)+CHAR(112)+CHAR(113),(SELECT (CASE WHEN (4313=4313) THEN CHAR(49) ELSE CHAR(48) END)),CHAR(113)+CHAR(106)+CHAR(98)+CHAR(112)+CHAR(113)) AND 'XzQO%'='XzQO"
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>"http://cgspace.cgiar.org:80/bitstream/handle/10568/238/Res_report_no3.pdf;jsessionid=7311DD88B30EEF9A8F526FF89378C2C5%' AND 4313=CONCAT(CHAR(113)+CHAR(98)+CHAR(106)+CHAR(112)+CHAR(113),(SELECT (CASE WHEN (4313=4313) THEN CHAR(49) ELSE CHAR(48) END)),CHAR(113)+CHAR(106)+CHAR(98)+CHAR(112)+CHAR(113)) AND 'XzQO%'='XzQO"
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>I purged the hits from these two using my <code>check-spider-ip-hits.sh</code>:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips -p
|
||||
Purging 4005 hits from 45.146.165.203 in statistics
|
||||
Purging 3493 hits from 130.255.161.231 in statistics
|
||||
<span style="color:#960050;background-color:#1e0010">
|
||||
</span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 7498
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips -p
|
||||
</span></span><span style="display:flex;"><span>Purging 4005 hits from 45.146.165.203 in statistics
|
||||
</span></span><span style="display:flex;"><span>Purging 3493 hits from 130.255.161.231 in statistics
|
||||
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
|
||||
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 7498
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Ugh, I looked in Solr for the top IPs in 2021-01 and found a few more of these Russian IPs so I purged them too:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips -p
|
||||
Purging 27163 hits from 45.146.164.176 in statistics
|
||||
Purging 19556 hits from 45.146.165.105 in statistics
|
||||
Purging 15927 hits from 45.146.165.83 in statistics
|
||||
Purging 8085 hits from 45.146.165.104 in statistics
|
||||
<span style="color:#960050;background-color:#1e0010">
|
||||
</span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 70731
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips -p
|
||||
</span></span><span style="display:flex;"><span>Purging 27163 hits from 45.146.164.176 in statistics
|
||||
</span></span><span style="display:flex;"><span>Purging 19556 hits from 45.146.165.105 in statistics
|
||||
</span></span><span style="display:flex;"><span>Purging 15927 hits from 45.146.165.83 in statistics
|
||||
</span></span><span style="display:flex;"><span>Purging 8085 hits from 45.146.165.104 in statistics
|
||||
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
|
||||
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 70731
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>My god, and 64.39.99.15 is from Qualys, the domain scanning security people, who are making queries trying to see if we are vulnerable or something (wtf?)
|
||||
<ul>
|
||||
<li>Looking in Solr I see a few different IPs with DNS like <code>sn003.s02.iad01.qualys.com.</code> so I will purge their requests too:</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips -p
|
||||
Purging 3 hits from 130.255.161.231 in statistics
|
||||
Purging 16773 hits from 64.39.99.15 in statistics
|
||||
Purging 6976 hits from 64.39.99.13 in statistics
|
||||
Purging 13 hits from 64.39.99.63 in statistics
|
||||
Purging 12 hits from 64.39.99.65 in statistics
|
||||
Purging 12 hits from 64.39.99.94 in statistics
|
||||
<span style="color:#960050;background-color:#1e0010">
|
||||
</span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 23789
|
||||
</code></pre></div><h2 id="2021-02-17">2021-02-17</h2>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ ./ilri/check-spider-ip-hits.sh -f /tmp/ips -p
|
||||
</span></span><span style="display:flex;"><span>Purging 3 hits from 130.255.161.231 in statistics
|
||||
</span></span><span style="display:flex;"><span>Purging 16773 hits from 64.39.99.15 in statistics
|
||||
</span></span><span style="display:flex;"><span>Purging 6976 hits from 64.39.99.13 in statistics
|
||||
</span></span><span style="display:flex;"><span>Purging 13 hits from 64.39.99.63 in statistics
|
||||
</span></span><span style="display:flex;"><span>Purging 12 hits from 64.39.99.65 in statistics
|
||||
</span></span><span style="display:flex;"><span>Purging 12 hits from 64.39.99.94 in statistics
|
||||
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
|
||||
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>Total number of bot hits purged: 23789
|
||||
</span></span></code></pre></div><h2 id="2021-02-17">2021-02-17</h2>
|
||||
<ul>
|
||||
<li>I tested Node.js 10 vs 12 on CGSpace (linode18) and DSpace Test (linode26) and the build times were surprising
|
||||
<ul>
|
||||
@ -627,11 +627,11 @@ Purging 12 hits from 64.39.99.94 in statistics
|
||||
<li>Abenet asked me to add Tom Randolph’s ORCID identifier to CGSpace</li>
|
||||
<li>I also tagged all his 247 existing items on CGSpace:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ cat 2021-02-17-add-tom-orcid.csv
|
||||
dc.contributor.author,cg.creator.id
|
||||
"Randolph, Thomas F.","Thomas Fitz Randolph: 0000-0003-1849-9877"
|
||||
$ ./ilri/add-orcid-identifiers-csv.py -i 2021-02-17-add-tom-orcid.csv -db dspace -u dspace -p <span style="color:#e6db74">'fuuu'</span>
|
||||
</code></pre></div><h2 id="2021-02-20">2021-02-20</h2>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ cat 2021-02-17-add-tom-orcid.csv
|
||||
</span></span><span style="display:flex;"><span>dc.contributor.author,cg.creator.id
|
||||
</span></span><span style="display:flex;"><span>"Randolph, Thomas F.","Thomas Fitz Randolph: 0000-0003-1849-9877"
|
||||
</span></span><span style="display:flex;"><span>$ ./ilri/add-orcid-identifiers-csv.py -i 2021-02-17-add-tom-orcid.csv -db dspace -u dspace -p <span style="color:#e6db74">'fuuu'</span>
|
||||
</span></span></code></pre></div><h2 id="2021-02-20">2021-02-20</h2>
|
||||
<ul>
|
||||
<li>Test the CG Core v2 migration on DSpace Test (linode26) one last time</li>
|
||||
</ul>
|
||||
@ -640,17 +640,17 @@ $ ./ilri/add-orcid-identifiers-csv.py -i 2021-02-17-add-tom-orcid.csv -db dspace
|
||||
<li>Start the CG Core v2 migration on CGSpace (linode18)</li>
|
||||
<li>After deploying the latest <code>6_x-prod</code> branch and running <code>migrate-fields.sh</code> I started a full Discovery reindex:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ time chrt -b <span style="color:#ae81ff">0</span> ionice -c2 -n7 nice -n19 dspace index-discovery -b
|
||||
<span style="color:#960050;background-color:#1e0010">
|
||||
</span><span style="color:#960050;background-color:#1e0010"></span>real 311m12.617s
|
||||
user 217m3.102s
|
||||
sys 2m37.363s
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ time chrt -b <span style="color:#ae81ff">0</span> ionice -c2 -n7 nice -n19 dspace index-discovery -b
|
||||
</span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010">
|
||||
</span></span></span><span style="display:flex;"><span><span style="color:#960050;background-color:#1e0010"></span>real 311m12.617s
|
||||
</span></span><span style="display:flex;"><span>user 217m3.102s
|
||||
</span></span><span style="display:flex;"><span>sys 2m37.363s
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Then update OAI:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ dspace oai import -c
|
||||
$ export JAVA_OPTS<span style="color:#f92672">=</span><span style="color:#e6db74">"-Dfile.encoding=UTF-8 -Xmx2048m"</span>
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ dspace oai import -c
|
||||
</span></span><span style="display:flex;"><span>$ export JAVA_OPTS<span style="color:#f92672">=</span><span style="color:#e6db74">"-Dfile.encoding=UTF-8 -Xmx2048m"</span>
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Ben Hack was asking if there is a REST API query that will give him all ILRI outputs for their new Sharepoint intranet
|
||||
<ul>
|
||||
<li>I told him he can try to use something like this if it’s just something like the ILRI articles in journals collection:</li>
|
||||
@ -668,16 +668,16 @@ $ export JAVA_OPTS<span style="color:#f92672">=</span><span style="color:#e6db74
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ export JAVA_OPTS<span style="color:#f92672">=</span><span style="color:#e6db74">'-Dfile.encoding=UTF-8 -Xmx1024m'</span>
|
||||
$ dspace metadata-import -e aorth@mjanja.ch -f /tmp/cifor.csv
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ export JAVA_OPTS<span style="color:#f92672">=</span><span style="color:#e6db74">'-Dfile.encoding=UTF-8 -Xmx1024m'</span>
|
||||
</span></span><span style="display:flex;"><span>$ dspace metadata-import -e aorth@mjanja.ch -f /tmp/cifor.csv
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>The process took an hour or so!</li>
|
||||
<li>I added colorized output to the csv-metadata-quality tool and tagged <a href="https://github.com/ilri/csv-metadata-quality/releases/tag/v0.4.4">version 0.4.4 on GitHub</a></li>
|
||||
<li>I updated the fields in AReS Explorer and then removed the old temp index so I can start a fresh re-harvest of CGSpace:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
# start indexing in AReS
|
||||
</code></pre></div><h2 id="2021-02-22">2021-02-22</h2>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
</span></span><span style="display:flex;"><span># start indexing in AReS
|
||||
</span></span></code></pre></div><h2 id="2021-02-22">2021-02-22</h2>
|
||||
<ul>
|
||||
<li>Start looking at splitting the series name and number in <code>dcterms.isPartOf</code> now that we have migrated to CG Core v2
|
||||
<ul>
|
||||
@ -687,43 +687,43 @@ $ dspace metadata-import -e aorth@mjanja.ch -f /tmp/cifor.csv
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">localhost/dspace63= > UPDATE metadatavalue SET text_value = REGEXP_REPLACE(text_value, '^(.+?);$','\1', 'g') WHERE metadata_field_id=166 AND dspace_object_id IN (SELECT uuid FROM item) AND text_value ~ ';$';
|
||||
UPDATE 104
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspace63= > UPDATE metadatavalue SET text_value = REGEXP_REPLACE(text_value, '^(.+?);$','\1', 'g') WHERE metadata_field_id=166 AND dspace_object_id IN (SELECT uuid FROM item) AND text_value ~ ';$';
|
||||
</span></span><span style="display:flex;"><span>UPDATE 104
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>As for splitting the other values, I think I can export the <code>dspace_object_id</code> and <code>text_value</code> and then upload it as a CSV rather than writing a Python script to create the new metadata values</li>
|
||||
</ul>
|
||||
<h2 id="2021-02-22-1">2021-02-22</h2>
|
||||
<ul>
|
||||
<li>Check the results of the AReS harvesting from last night:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span>
|
||||
{
|
||||
"count" : 101380,
|
||||
"_shards" : {
|
||||
"total" : 1,
|
||||
"successful" : 1,
|
||||
"skipped" : 0,
|
||||
"failed" : 0
|
||||
}
|
||||
}
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span>
|
||||
</span></span><span style="display:flex;"><span>{
|
||||
</span></span><span style="display:flex;"><span> "count" : 101380,
|
||||
</span></span><span style="display:flex;"><span> "_shards" : {
|
||||
</span></span><span style="display:flex;"><span> "total" : 1,
|
||||
</span></span><span style="display:flex;"><span> "successful" : 1,
|
||||
</span></span><span style="display:flex;"><span> "skipped" : 0,
|
||||
</span></span><span style="display:flex;"><span> "failed" : 0
|
||||
</span></span><span style="display:flex;"><span> }
|
||||
</span></span><span style="display:flex;"><span>}
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Set the current items index to read only and make a backup:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">' {"settings": {"index.blocks.write":true}}'</span>
|
||||
$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-02-22
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">' {"settings": {"index.blocks.write":true}}'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -s -X POST http://localhost:9200/openrxv-items/_clone/openrxv-items-2021-02-22
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Delete the current items index and clone the temp one to it:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items'</span>
|
||||
$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items-temp/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">'{"settings": {"index.blocks.write": true}}'</span>
|
||||
$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -X PUT <span style="color:#e6db74">"localhost:9200/openrxv-items-temp/_settings"</span> -H <span style="color:#e6db74">'Content-Type: application/json'</span> -d<span style="color:#e6db74">'{"settings": {"index.blocks.write": true}}'</span>
|
||||
</span></span><span style="display:flex;"><span>$ curl -s -X POST http://localhost:9200/openrxv-items-temp/_clone/openrxv-items
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Then delete the temp and backup:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
{"acknowledged":true}%
|
||||
$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-2021-02-22'</span>
|
||||
</code></pre></div><h2 id="2021-02-23">2021-02-23</h2>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
</span></span><span style="display:flex;"><span>{"acknowledged":true}%
|
||||
</span></span><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-2021-02-22'</span>
|
||||
</span></span></code></pre></div><h2 id="2021-02-23">2021-02-23</h2>
|
||||
<ul>
|
||||
<li>CodeObia sent a <a href="https://github.com/ilri/OpenRXV/pull/75">pull request for clickable countries on AReS</a>
|
||||
<ul>
|
||||
@ -732,22 +732,22 @@ $ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-i
|
||||
</li>
|
||||
<li>Remove semicolons from series names without numbers:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">dspace=# BEGIN;
|
||||
dspace=# UPDATE metadatavalue SET text_value = REGEXP_REPLACE(text_value, '^(.+?);$','\1', 'g') WHERE metadata_field_id=166 AND dspace_object_id IN (SELECT uuid FROM item) AND text_value ~ ';$';
|
||||
UPDATE 104
|
||||
dspace=# COMMIT;
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>dspace=# BEGIN;
|
||||
</span></span><span style="display:flex;"><span>dspace=# UPDATE metadatavalue SET text_value = REGEXP_REPLACE(text_value, '^(.+?);$','\1', 'g') WHERE metadata_field_id=166 AND dspace_object_id IN (SELECT uuid FROM item) AND text_value ~ ';$';
|
||||
</span></span><span style="display:flex;"><span>UPDATE 104
|
||||
</span></span><span style="display:flex;"><span>dspace=# COMMIT;
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Set all <code>text_lang</code> values on CGSpace to <code>en_US</code> to make the series replacements easier (this didn’t work, read below):</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">dspace=# BEGIN;
|
||||
dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE text_lang !='en_US' AND dspace_object_id IN (SELECT uuid FROM item);
|
||||
UPDATE 911
|
||||
cgspace=# COMMIT;
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>dspace=# BEGIN;
|
||||
</span></span><span style="display:flex;"><span>dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE text_lang !='en_US' AND dspace_object_id IN (SELECT uuid FROM item);
|
||||
</span></span><span style="display:flex;"><span>UPDATE 911
|
||||
</span></span><span style="display:flex;"><span>cgspace=# COMMIT;
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Then export all series with their IDs to CSV:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">dspace=# \COPY (SELECT dspace_object_id, text_value as "dcterms.isPartOf[en_US]" FROM metadatavalue WHERE metadata_field_id=166 AND dspace_object_id IN (SELECT uuid FROM item)) TO /tmp/2021-02-23-series.csv WITH CSV HEADER;
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>dspace=# \COPY (SELECT dspace_object_id, text_value as "dcterms.isPartOf[en_US]" FROM metadatavalue WHERE metadata_field_id=166 AND dspace_object_id IN (SELECT uuid FROM item)) TO /tmp/2021-02-23-series.csv WITH CSV HEADER;
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>In OpenRefine I trimmed and consolidated whitespace, then made some quick cleanups to normalize the fields based on a sanity check
|
||||
<ul>
|
||||
<li>For example many Spore items are like “Spore, Spore 23”</li>
|
||||
@ -761,23 +761,23 @@ cgspace=# COMMIT;
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE metadata_value_id=5355845;
|
||||
UPDATE 1
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE metadata_value_id=5355845;
|
||||
</span></span><span style="display:flex;"><span>UPDATE 1
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>This also seems to work, using the id for just that one item:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE dspace_object_id='9840d19b-a6ae-4352-a087-6d74d2629322';
|
||||
UPDATE 37
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE dspace_object_id='9840d19b-a6ae-4352-a087-6d74d2629322';
|
||||
</span></span><span style="display:flex;"><span>UPDATE 37
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>This seems to work better for some reason:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">dspacetest=# UPDATE metadatavalue SET text_lang='en_US' WHERE metadata_field_id=166 AND dspace_object_id IN (SELECT uuid FROM item);
|
||||
UPDATE 18659
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>dspacetest=# UPDATE metadatavalue SET text_lang='en_US' WHERE metadata_field_id=166 AND dspace_object_id IN (SELECT uuid FROM item);
|
||||
</span></span><span style="display:flex;"><span>UPDATE 18659
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>I split the CSV file in batches of 5,000 using xsv, then imported them one by one in CGSpace:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ dspace metadata-import -f /tmp/0.csv
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ dspace metadata-import -f /tmp/0.csv
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>It took FOREVER to import each file… like several hours <em>each</em>. MY GOD DSpace 6 is slow.</li>
|
||||
<li>Help Dominique Perera debug some issues with the WordPress DSpace importer plugin from Macaroni Bros
|
||||
<ul>
|
||||
@ -785,40 +785,40 @@ UPDATE 18659
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">104.198.97.97 - - [23/Feb/2021:11:41:17 +0100] "GET /rest/communities?limit=1000 HTTP/1.1" 200 188779 "https://cgspace.cgiar.org/rest /communities?limit=1000" "RTB website BOT"
|
||||
104.198.97.97 - - [23/Feb/2021:11:41:18 +0100] "GET /rest/communities//communities HTTP/1.1" 404 714 "https://cgspace.cgiar.org/rest/communities//communities" "RTB website BOT"
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>104.198.97.97 - - [23/Feb/2021:11:41:17 +0100] "GET /rest/communities?limit=1000 HTTP/1.1" 200 188779 "https://cgspace.cgiar.org/rest /communities?limit=1000" "RTB website BOT"
|
||||
</span></span><span style="display:flex;"><span>104.198.97.97 - - [23/Feb/2021:11:41:18 +0100] "GET /rest/communities//communities HTTP/1.1" 404 714 "https://cgspace.cgiar.org/rest/communities//communities" "RTB website BOT"
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>The first request is OK, but the second one is malformed for sure</li>
|
||||
</ul>
|
||||
<h2 id="2021-02-24">2021-02-24</h2>
|
||||
<ul>
|
||||
<li>Export a list of journals for Peter to look through:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">localhost/dspace63= > \COPY (SELECT DISTINCT text_value as "cg.journal", count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=251 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-02-24-journals.csv WITH CSV HEADER;
|
||||
COPY 3345
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspace63= > \COPY (SELECT DISTINCT text_value as "cg.journal", count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=251 GROUP BY text_value ORDER BY count DESC) to /tmp/2021-02-24-journals.csv WITH CSV HEADER;
|
||||
</span></span><span style="display:flex;"><span>COPY 3345
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Start a fresh harvesting on AReS because Udana mapped some items today and wants to include them in his report:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
# start indexing in AReS
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -XDELETE <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp'</span>
|
||||
</span></span><span style="display:flex;"><span># start indexing in AReS
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>Also, I want to include the new series name/number cleanups so it’s not a total waste of time</li>
|
||||
</ul>
|
||||
<h2 id="2021-02-25">2021-02-25</h2>
|
||||
<ul>
|
||||
<li>Hmm the AReS harvest last night seems to have finished successfully, but the number of items is less than I was expecting:</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span>
|
||||
{
|
||||
"count" : 99546,
|
||||
"_shards" : {
|
||||
"total" : 1,
|
||||
"successful" : 1,
|
||||
"skipped" : 0,
|
||||
"failed" : 0
|
||||
}
|
||||
}
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ curl -s <span style="color:#e6db74">'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty'</span>
|
||||
</span></span><span style="display:flex;"><span>{
|
||||
</span></span><span style="display:flex;"><span> "count" : 99546,
|
||||
</span></span><span style="display:flex;"><span> "_shards" : {
|
||||
</span></span><span style="display:flex;"><span> "total" : 1,
|
||||
</span></span><span style="display:flex;"><span> "successful" : 1,
|
||||
</span></span><span style="display:flex;"><span> "skipped" : 0,
|
||||
</span></span><span style="display:flex;"><span> "failed" : 0
|
||||
</span></span><span style="display:flex;"><span> }
|
||||
</span></span><span style="display:flex;"><span>}
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>The current items index has 101380 items… I wonder what happened
|
||||
<ul>
|
||||
<li>I started a new indexing</li>
|
||||
@ -843,9 +843,9 @@ COPY 3345
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">value.partition(/[0-9]+\([0-9]+\)/)[1].replace(/\(.*\)/,"")
|
||||
value.partition(/[0-9]+\([0-9]+\)/)[1].replace(/^\d+\((\d+)\)/,"$1")
|
||||
</code></pre></div><ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>value.partition(/[0-9]+\([0-9]+\)/)[1].replace(/\(.*\)/,"")
|
||||
</span></span><span style="display:flex;"><span>value.partition(/[0-9]+\([0-9]+\)/)[1].replace(/^\d+\((\d+)\)/,"$1")
|
||||
</span></span></code></pre></div><ul>
|
||||
<li>This <code>value.partition</code> was new to me… and it took me a bit of time to figure out whether I needed to escape the parentheses in the issue number or not (no) and how to reference a capture group with <code>value.replace</code></li>
|
||||
<li>I tried to check the 1095 CIFOR records from last week for duplicates on DSpace Test, but the page says “Processing” and never loads
|
||||
<ul>
|
||||
@ -857,27 +857,27 @@ value.partition(/[0-9]+\([0-9]+\)/)[1].replace(/^\d+\((\d+)\)/,"$1")
|
||||
<li>Niroshini from IWMI is still having issues adding WLE subjects to items during the metadata review step in the workflow</li>
|
||||
<li>It seems the BatchEditConsumer log spam is gone since I applied <a href="https://github.com/ilri/DSpace/pull/462">Atmire’s patch</a></li>
|
||||
</ul>
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4"><code class="language-console" data-lang="console">$ grep -c <span style="color:#e6db74">'BatchEditConsumer should not have been given'</span> dspace.log.2021-02-<span style="color:#f92672">[</span>12<span style="color:#f92672">]</span>*
|
||||
dspace.log.2021-02-10:5067
|
||||
dspace.log.2021-02-11:2647
|
||||
dspace.log.2021-02-12:4231
|
||||
dspace.log.2021-02-13:221
|
||||
dspace.log.2021-02-14:0
|
||||
dspace.log.2021-02-15:0
|
||||
dspace.log.2021-02-16:0
|
||||
dspace.log.2021-02-17:0
|
||||
dspace.log.2021-02-18:0
|
||||
dspace.log.2021-02-19:0
|
||||
dspace.log.2021-02-20:0
|
||||
dspace.log.2021-02-21:0
|
||||
dspace.log.2021-02-22:0
|
||||
dspace.log.2021-02-23:0
|
||||
dspace.log.2021-02-24:0
|
||||
dspace.log.2021-02-25:0
|
||||
dspace.log.2021-02-26:0
|
||||
dspace.log.2021-02-27:0
|
||||
dspace.log.2021-02-28:0
|
||||
</code></pre></div><!-- raw HTML omitted -->
|
||||
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ grep -c <span style="color:#e6db74">'BatchEditConsumer should not have been given'</span> dspace.log.2021-02-<span style="color:#f92672">[</span>12<span style="color:#f92672">]</span>*
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-10:5067
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-11:2647
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-12:4231
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-13:221
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-14:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-15:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-16:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-17:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-18:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-19:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-20:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-21:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-22:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-23:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-24:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-25:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-26:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-27:0
|
||||
</span></span><span style="display:flex;"><span>dspace.log.2021-02-28:0
|
||||
</span></span></code></pre></div><!-- raw HTML omitted -->
|
||||
|
||||
|
||||
|
||||
|
Reference in New Issue
Block a user