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Alan Orth 2017-01-22 11:11:46 +02:00
parent 305c7f9013
commit 258cfc3f9a
Signed by: alanorth
GPG Key ID: 0FB860CC9C45B1B9
24 changed files with 665 additions and 605 deletions
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64
public/2015-11/index.html
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@ -35,30 +35,6 @@ $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspac
<meta itemprop="name" content="November, 2015">
<meta itemprop="description" content="2015-11-22
CGSpace went down
Looks like DSpace exhausted its PostgreSQL connection pool
Last week I had increased the limit from 30 to 60, which seemed to help, but now there are many more idle connections:
$ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspace
78
">
<meta itemprop="dateModified" content="2015-11-23T17:00:57&#43;03:00" />
<meta itemprop="wordCount" content="798">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -80,17 +56,39 @@ $ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspac
"/>
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
{
"@context": "http://schema.org",
"@type": "BlogPosting",
"headline": "November, 2015",
"url": "https://alanorth.github.io/cgspace-notes/2015-11/",
"wordCount": "798",
"datePublished": "2015-11-23T17:00:57+03:00",
"dateModified": "2015-11-23T17:00:57+03:00",
"author": {
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"name": "Alan Orth"
}
,
"keywords": "Notes"
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</script>
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2015-11/">
<title>November, 2015 | CGSpace Notes</title>
@ -124,7 +122,7 @@ $ psql -c &#39;SELECT * from pg_stat_activity;&#39; | grep idle | grep -c cgspac
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

65
public/2015-12/index.html
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@ -36,31 +36,6 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
<meta itemprop="name" content="December, 2015">
<meta itemprop="description" content="2015-12-02
Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less space:
# cd /home/dspacetest.cgiar.org/log
# ls -lh dspace.log.2015-11-18*
-rw-rw-r-- 1 tomcat7 tomcat7 2.0M Nov 18 23:59 dspace.log.2015-11-18
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
">
<meta itemprop="dateModified" content="2015-12-02T13:18:00&#43;03:00" />
<meta itemprop="wordCount" content="753">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -83,17 +58,39 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
"/>
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<script type="application/ld+json">
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"wordCount": "753",
"datePublished": "2015-12-02T13:18:00+03:00",
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2015-12/">
<title>December, 2015 | CGSpace Notes</title>
@ -127,7 +124,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

60
public/2016-01/index.html
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@ -31,26 +31,6 @@ Update GitHub wiki for documentation of maintenance tasks.
<meta itemprop="name" content="January, 2016">
<meta itemprop="description" content="2016-01-13
Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_collections.sh script I wrote last year.
I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.
Update GitHub wiki for documentation of maintenance tasks.
">
<meta itemprop="dateModified" content="2016-01-13T13:18:00&#43;03:00" />
<meta itemprop="wordCount" content="466">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -68,17 +48,39 @@ Update GitHub wiki for documentation of maintenance tasks.
"/>
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"wordCount": "466",
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-01/">
<title>January, 2016 | CGSpace Notes</title>
@ -112,7 +114,7 @@ Update GitHub wiki for documentation of maintenance tasks.
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

67
public/2016-02/index.html
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@ -38,33 +38,6 @@ Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&r
<meta itemprop="name" content="February, 2016">
<meta itemprop="description" content="2016-02-05
Looking at some DAGRIS data for Abenet Yabowork
Lots of issues with spaces, newlines, etc causing the import to fail
I noticed we have a very interesting list of countries on CGSpace:
Not only are there 49,000 countries, we have some blanks (25)&hellip;
Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;
">
<meta itemprop="dateModified" content="2016-02-05T13:18:00&#43;03:00" />
<meta itemprop="wordCount" content="1657">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -89,17 +62,39 @@ Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&r
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-02/">
<title>February, 2016 | CGSpace Notes</title>
@ -133,7 +128,7 @@ Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&r
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

60
public/2016-03/index.html
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@ -31,26 +31,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<meta itemprop="name" content="March, 2016">
<meta itemprop="description" content="2016-03-02
Looking at issues with author authorities on CGSpace
For some reason we still have the index-lucene-update cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module
Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server
">
<meta itemprop="dateModified" content="2016-03-02T16:50:00&#43;03:00" />
<meta itemprop="wordCount" content="1581">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -68,17 +48,39 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-03/">
<title>March, 2016 | CGSpace Notes</title>
@ -112,7 +114,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

62
public/2016-04/index.html
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@ -33,28 +33,6 @@ Also, I noticed the checker log has some errors we should pay attention to:
<meta itemprop="name" content="April, 2016">
<meta itemprop="description" content="2016-04-04
Looking at log file use on CGSpace and notice that we need to work on our cron setup a bit
We are backing up all logs in the log folder, including useless stuff like solr, cocoon, handle-plugin, etc
After running DSpace for over five years I&rsquo;ve never needed to look in any other log file than dspace.log, leave alone one from last year!
This will save us a few gigs of backup space we&rsquo;re paying for on S3
Also, I noticed the checker log has some errors we should pay attention to:
">
<meta itemprop="dateModified" content="2016-04-04T11:06:00&#43;03:00" />
<meta itemprop="wordCount" content="2006">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -74,17 +52,39 @@ Also, I noticed the checker log has some errors we should pay attention to:
"/>
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-04/">
<title>April, 2016 | CGSpace Notes</title>
@ -118,7 +118,7 @@ Also, I noticed the checker log has some errors we should pay attention to:
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

64
public/2016-05/index.html
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@ -35,30 +35,6 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
<meta itemprop="name" content="May, 2016">
<meta itemprop="description" content="2016-05-01
Since yesterday there have been 10,000 REST errors and the site has been unstable again
I have blocked access to the API now
There are 3,000 IPs accessing the REST API in a 24-hour period!
# awk &#39;{print $1}&#39; /var/log/nginx/rest.log | uniq | wc -l
3168
">
<meta itemprop="dateModified" content="2016-05-01T23:06:00&#43;03:00" />
<meta itemprop="wordCount" content="1349">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -80,17 +56,39 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
"/>
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-05/">
<title>May, 2016 | CGSpace Notes</title>
@ -124,7 +122,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

63
public/2016-06/index.html
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@ -34,29 +34,6 @@ Working on second phase of metadata migration, looks like this will work for mov
<meta itemprop="name" content="June, 2016">
<meta itemprop="description" content="2016-06-01
Experimenting with IFPRI OAI (we want to harvest their publications)
After reading the ContentDM documentation I found IFPRI&rsquo;s OAI endpoint: http://ebrary.ifpri.org/oai/oai.php
After reading the OAI documentation and testing with an OAI validator I found out how to get their publications
This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRecords&amp;from=2016-01-01&amp;set=p15738coll2&amp;metadataPrefix=oai_dc
You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets
Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship
">
<meta itemprop="dateModified" content="2016-06-01T10:53:00&#43;03:00" />
<meta itemprop="wordCount" content="1549">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -77,17 +54,39 @@ Working on second phase of metadata migration, looks like this will work for mov
"/>
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-06/">
<title>June, 2016 | CGSpace Notes</title>
@ -121,7 +120,7 @@ Working on second phase of metadata migration, looks like this will work for mov
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

71
public/2016-07/index.html
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@ -42,37 +42,6 @@ In this case the select query was showing 95 results before the update
<meta itemprop="name" content="July, 2016">
<meta itemprop="description" content="2016-07-01
Add dc.description.sponsorship to Discovery sidebar facets and make investors clickable in item view (#232)
I think this query should find and replace all authors that have &ldquo;,&rdquo; at the end of their names:
dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, &#39;(^.&#43;?),$&#39;, &#39;\1&#39;) where metadata_field_id=3 and resource_type_id=2 and text_value ~ &#39;^.&#43;?,$&#39;;
UPDATE 95
dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ &#39;^.&#43;?,$&#39;;
text_value
------------
(0 rows)
In this case the select query was showing 95 results before the update
">
<meta itemprop="dateModified" content="2016-07-01T10:53:00&#43;03:00" />
<meta itemprop="wordCount" content="866">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -101,17 +70,39 @@ In this case the select query was showing 95 results before the update
"/>
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
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"headline": "July, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-07/",
"wordCount": "866",
"datePublished": "2016-07-01T10:53:00+03:00",
"dateModified": "2016-07-01T10:53:00+03:00",
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"name": "Alan Orth"
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-07/">
<title>July, 2016 | CGSpace Notes</title>
@ -145,7 +136,7 @@ In this case the select query was showing 95 results before the update
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

68
public/2016-08/index.html
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@ -39,34 +39,6 @@ $ git rebase -i dspace-5.5
<meta itemprop="name" content="August, 2016">
<meta itemprop="description" content="2016-08-01
Add updated distribution license from Sisay (#259)
Play with upgrading Mirage 2 dependencies in bower.json because most are several versions of out date
Bootstrap is at 3.3.0 but upstream is at 3.3.7, and upgrading to anything beyond 3.3.1 breaks glyphicons and probably more
bower stuff is a dead end, waste of time, too many issues
Anything after Bootstrap 3.3.1 makes glyphicons disappear (HTTP 404 trying to access from incorrect path of fonts)
Start working on DSpace 5.1 → 5.5 port:
$ git checkout -b 55new 5_x-prod
$ git reset --hard ilri/5_x-prod
$ git rebase -i dspace-5.5
">
<meta itemprop="dateModified" content="2016-08-01T15:53:00&#43;03:00" />
<meta itemprop="wordCount" content="1514">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -92,17 +64,39 @@ $ git rebase -i dspace-5.5
"/>
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
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"@context": "http://schema.org",
"@type": "BlogPosting",
"headline": "August, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-08/",
"wordCount": "1514",
"datePublished": "2016-08-01T15:53:00+03:00",
"dateModified": "2016-08-01T15:53:00+03:00",
"author": {
"@type": "Person",
"name": "Alan Orth"
}
,
"keywords": "Notes"
}
</script>
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-08/">
<title>August, 2016 | CGSpace Notes</title>
@ -136,7 +130,7 @@ $ git rebase -i dspace-5.5
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

64
public/2016-09/index.html
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@ -35,30 +35,6 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=or
<meta itemprop="name" content="September, 2016">
<meta itemprop="description" content="2016-09-01
Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors
Discuss how the migration of CGIAR&rsquo;s Active Directory to a flat structure will break our LDAP groups in DSpace
We had been using DC=ILRI to determine whether a user was ILRI or not
It looks like we might be able to use OUs now, instead of DCs:
$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot;
">
<meta itemprop="dateModified" content="2016-09-01T15:53:00&#43;03:00" />
<meta itemprop="wordCount" content="3298">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -80,17 +56,39 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=or
"/>
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
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"@type": "BlogPosting",
"headline": "September, 2016",
"url": "https://alanorth.github.io/cgspace-notes/2016-09/",
"wordCount": "3298",
"datePublished": "2016-09-01T15:53:00+03:00",
"dateModified": "2016-09-01T15:53:00+03:00",
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-09/">
<title>September, 2016 | CGSpace Notes</title>
@ -124,7 +122,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=or
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

68
public/2016-10/index.html
View File

@ -39,34 +39,6 @@ I exported a random item&rsquo;s metadata as CSV, deleted all columns except id
<meta itemprop="name" content="October, 2016">
<meta itemprop="description" content="2016-10-03
Testing adding ORCIDs to a CSV file for a single item to see if the author orders get messed up
Need to test the following scenarios to see how author order is affected:
ORCIDs only
ORCIDs plus normal authors
I exported a random item&rsquo;s metadata as CSV, deleted all columns except id and collection, and made a new coloum called ORCID:dc.contributor.author with the following random ORCIDs from the ORCID registry:
0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
">
<meta itemprop="dateModified" content="2016-10-03T15:53:00&#43;03:00" />
<meta itemprop="wordCount" content="1828">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -92,17 +64,39 @@ I exported a random item&rsquo;s metadata as CSV, deleted all columns except id
"/>
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<title>October, 2016 | CGSpace Notes</title>
@ -136,7 +130,7 @@ I exported a random item&rsquo;s metadata as CSV, deleted all columns except id
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

60
public/2016-11/index.html
View File

@ -31,26 +31,6 @@ Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module
<meta itemprop="name" content="November, 2016">
<meta itemprop="description" content="2016-11-01
Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module (#286)
">
<meta itemprop="dateModified" content="2016-11-01T09:21:00&#43;03:00" />
<meta itemprop="wordCount" content="2825">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -68,17 +48,39 @@ Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module
"/>
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-11/">
<title>November, 2016 | CGSpace Notes</title>
@ -112,7 +114,7 @@ Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

72
public/2016-12/index.html
View File

@ -43,38 +43,6 @@ Another worrying error from dspace.log is:
<meta itemprop="name" content="December, 2016">
<meta itemprop="description" content="2016-12-02
CGSpace was down for five hours in the morning while I was sleeping
While looking in the logs for errors, I see tons of warnings about Atmire MQM:
2016-12-02 03:00:32,352 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail=&quot;dc.title&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail=&quot;THUMBNAIL&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail=&quot;-1&quot;, transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
2016-12-02 03:00:32,353 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID=&quot;TX157907838689377964651674089851855413607&quot;)
I see thousands of them in the logs for the last few months, so it&rsquo;s not related to the DSpace 5.5 upgrade
I&rsquo;ve raised a ticket with Atmire to ask
Another worrying error from dspace.log is:
">
<meta itemprop="dateModified" content="2016-12-02T10:43:00&#43;03:00" />
<meta itemprop="wordCount" content="4078">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
@ -104,17 +72,39 @@ Another worrying error from dspace.log is:
"/>
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2016-12/">
<title>December, 2016 | CGSpace Notes</title>
@ -148,7 +138,7 @@ Another worrying error from dspace.log is:
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

69
public/2017-01/index.html
View File

@ -6,7 +6,15 @@
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="January, 2017" />
<meta property="og:description" content="2017-01-02 I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error I tested on DSpace Test as well and it doesn&rsquo;t work there either I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years 2017-01-04 I tried to shard my local dev instance and it fails the same way: $ JAVA_OPTS=&quot;-Xms768m -Xmx768m -Dfile." />
<meta property="og:description" content="2017-01-02
I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error
I tested on DSpace Test as well and it doesn&rsquo;t work there either
I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years
" />
<meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2017-01/" />
@ -23,38 +31,56 @@
<meta itemprop="name" content="January, 2017">
<meta itemprop="description" content="2017-01-02 I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error I tested on DSpace Test as well and it doesn&rsquo;t work there either I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years 2017-01-04 I tried to shard my local dev instance and it fails the same way: $ JAVA_OPTS=&quot;-Xms768m -Xmx768m -Dfile.">
<meta itemprop="dateModified" content="2017-01-02T10:43:00&#43;03:00" />
<meta itemprop="wordCount" content="1219">
<meta itemprop="keywords" content="notes," />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="January, 2017"/>
<meta name="twitter:description" content="2017-01-02 I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error I tested on DSpace Test as well and it doesn&rsquo;t work there either I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years 2017-01-04 I tried to shard my local dev instance and it fails the same way: $ JAVA_OPTS=&quot;-Xms768m -Xmx768m -Dfile."/>
<meta name="twitter:description" content="2017-01-02
I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error
I tested on DSpace Test as well and it doesn&rsquo;t work there either
I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years
"/>
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2017-01/">
<title>January, 2017 | CGSpace Notes</title>
@ -88,7 +114,7 @@
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>
@ -108,8 +134,6 @@
</p>
</header>
<h2 id="2017-01-02">2017-01-02</h2>
<ul>
@ -118,6 +142,8 @@
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
</ul>
<p></p>
<h2 id="2017-01-04">2017-01-04</h2>
<ul>
@ -363,7 +389,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
</article>

49
public/index.html
View File

@ -6,7 +6,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="CGSpace Notes" />
<meta property="og:description" content="" />
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
@ -21,22 +21,31 @@
<meta itemprop="name" content="CGSpace Notes">
<meta itemprop="description" content="">
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
{
"@context": "http://schema.org",
"@type": "Blog",
"headline": "CGSpace Notes",
"url" : "https://alanorth.github.io/cgspace-notes/",
"author": {
"@type": "Person",
"name": "Alan Orth"
},
"keywords": "notes,"
,
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
</script>
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/">
<title>CGSpace Notes</title>
@ -73,7 +82,7 @@
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>
@ -96,7 +105,15 @@
</p>
</header>
2017-01-02 I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error I tested on DSpace Test as well and it doesn&rsquo;t work there either I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years 2017-01-04 I tried to shard my local dev instance and it fails the same way: $ JAVA_OPTS=&quot;-Xms768m -Xmx768m -Dfile.
<h2 id="2017-01-02">2017-01-02</h2>
<ul>
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
</ul>
<p></p>
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
</article>

9
public/index.xml
View File

@ -15,9 +15,7 @@
<pubDate>Mon, 02 Jan 2017 10:43:00 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2017-01/</guid>
<description>
&lt;h2 id=&#34;2017-01-02&#34;&gt;2017-01-02&lt;/h2&gt;
<description>&lt;h2 id=&#34;2017-01-02&#34;&gt;2017-01-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error&lt;/li&gt;
@ -25,6 +23,8 @@
&lt;li&gt;I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&amp;rsquo;m not sure if we&amp;rsquo;ve ever had the sharding task run successfully over all these years&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;/p&gt;
&lt;h2 id=&#34;2017-01-04&#34;&gt;2017-01-04&lt;/h2&gt;
&lt;ul&gt;
@ -264,8 +264,7 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
&lt;ul&gt;
&lt;li&gt;Looking at some records that Sisay is having problems importing into DSpace Test (seems to be because of copious whitespace return characters from Excel&amp;rsquo;s CSV exporter)&lt;/li&gt;
&lt;li&gt;There were also some issues with an invalid dc.date.issued field, and I trimmed leading / trailing whitespace and cleaned up some URLs with unneeded parameters like ?show=full&lt;/li&gt;
&lt;/ul&gt;
</description>
&lt;/ul&gt;</description>
</item>
<item>

39
public/page/2/index.html
View File

@ -6,7 +6,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="CGSpace Notes" />
<meta property="og:description" content="" />
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
@ -21,22 +21,31 @@
<meta itemprop="name" content="CGSpace Notes">
<meta itemprop="description" content="">
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
{
"@context": "http://schema.org",
"@type": "Blog",
"headline": "CGSpace Notes",
"url" : "https://alanorth.github.io/cgspace-notes/",
"author": {
"@type": "Person",
"name": "Alan Orth"
},
"keywords": "notes,"
,
"description":"Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."
}
</script>
<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/">
<title>CGSpace Notes</title>
@ -73,7 +82,7 @@
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

49
public/post/index.html
View File

@ -6,7 +6,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="Posts" />
<meta property="og:description" content="" />
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/post/" />
@ -21,22 +21,31 @@
<meta itemprop="name" content="Posts">
<meta itemprop="description" content="">
<meta name="generator" content="Hugo 0.18.1" />
<script type="application/ld+json">
{
"@context": "http://schema.org",
"@type": "Blog",
"headline": "CGSpace Notes",
"url" : "https://alanorth.github.io/cgspace-notes/post/",
"author": {
"@type": "Person",
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},
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}
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/post/">
<title>CGSpace Notes</title>
@ -73,7 +82,7 @@
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>
@ -96,7 +105,15 @@
</p>
</header>
2017-01-02 I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error I tested on DSpace Test as well and it doesn&rsquo;t work there either I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years 2017-01-04 I tried to shard my local dev instance and it fails the same way: $ JAVA_OPTS=&quot;-Xms768m -Xmx768m -Dfile.
<h2 id="2017-01-02">2017-01-02</h2>
<ul>
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
</ul>
<p></p>
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
</article>

9
public/post/index.xml
View File

@ -15,9 +15,7 @@
<pubDate>Mon, 02 Jan 2017 10:43:00 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2017-01/</guid>
<description>
&lt;h2 id=&#34;2017-01-02&#34;&gt;2017-01-02&lt;/h2&gt;
<description>&lt;h2 id=&#34;2017-01-02&#34;&gt;2017-01-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error&lt;/li&gt;
@ -25,6 +23,8 @@
&lt;li&gt;I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&amp;rsquo;m not sure if we&amp;rsquo;ve ever had the sharding task run successfully over all these years&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;/p&gt;
&lt;h2 id=&#34;2017-01-04&#34;&gt;2017-01-04&lt;/h2&gt;
&lt;ul&gt;
@ -264,8 +264,7 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
&lt;ul&gt;
&lt;li&gt;Looking at some records that Sisay is having problems importing into DSpace Test (seems to be because of copious whitespace return characters from Excel&amp;rsquo;s CSV exporter)&lt;/li&gt;
&lt;li&gt;There were also some issues with an invalid dc.date.issued field, and I trimmed leading / trailing whitespace and cleaned up some URLs with unneeded parameters like ?show=full&lt;/li&gt;
&lt;/ul&gt;
</description>
&lt;/ul&gt;</description>
</item>
<item>

39
public/post/page/2/index.html
View File

@ -6,7 +6,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta property="og:title" content="Posts" />
<meta property="og:description" content="" />
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/post/" />
@ -21,22 +21,31 @@
<meta itemprop="name" content="Posts">
<meta itemprop="description" content="">
<meta name="generator" content="Hugo 0.18.1" />
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/post/">
<title>CGSpace Notes</title>
@ -73,7 +82,7 @@
<header class="blog-header">
<div class="container">
<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
</div>
</header>

49
public/tags/notes/index.html
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@ -6,7 +6,7 @@
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<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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</header>
@ -96,7 +105,15 @@
</p>
</header>
2017-01-02 I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error I tested on DSpace Test as well and it doesn&rsquo;t work there either I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years 2017-01-04 I tried to shard my local dev instance and it fails the same way: $ JAVA_OPTS=&quot;-Xms768m -Xmx768m -Dfile.
<h2 id="2017-01-02">2017-01-02</h2>
<ul>
<li>I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error</li>
<li>I tested on DSpace Test as well and it doesn&rsquo;t work there either</li>
<li>I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years</li>
</ul>
<p></p>
<a href='https://alanorth.github.io/cgspace-notes/2017-01/'>Read more →</a>
</article>

9
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<pubDate>Mon, 02 Jan 2017 10:43:00 +0300</pubDate>
<guid>https://alanorth.github.io/cgspace-notes/2017-01/</guid>
<description>
&lt;h2 id=&#34;2017-01-02&#34;&gt;2017-01-02&lt;/h2&gt;
<description>&lt;h2 id=&#34;2017-01-02&#34;&gt;2017-01-02&lt;/h2&gt;
&lt;ul&gt;
&lt;li&gt;I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error&lt;/li&gt;
@ -24,6 +22,8 @@
&lt;li&gt;I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&amp;rsquo;m not sure if we&amp;rsquo;ve ever had the sharding task run successfully over all these years&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;/p&gt;
&lt;h2 id=&#34;2017-01-04&#34;&gt;2017-01-04&lt;/h2&gt;
&lt;ul&gt;
@ -263,8 +263,7 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
&lt;ul&gt;
&lt;li&gt;Looking at some records that Sisay is having problems importing into DSpace Test (seems to be because of copious whitespace return characters from Excel&amp;rsquo;s CSV exporter)&lt;/li&gt;
&lt;li&gt;There were also some issues with an invalid dc.date.issued field, and I trimmed leading / trailing whitespace and cleaned up some URLs with unneeded parameters like ?show=full&lt;/li&gt;
&lt;/ul&gt;
</description>
&lt;/ul&gt;</description>
</item>
<item>

39
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<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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