diff --git a/content/posts/2021-01.md b/content/posts/2021-01.md index c428ae3e7..5b147db5d 100644 --- a/content/posts/2021-01.md +++ b/content/posts/2021-01.md @@ -71,4 +71,66 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-2021-01-04' - He wanted me to give him CSV export permissions on CGSpace, but I told him that this requires super admin so I'm not comfortable with it - Import one item to CGSpace for Peter +## 2021-01-07 + +- Import twenty CABI book chapters for Abenet +- Udana and some editors from IWMI are still having problems editing metadata during the workflow step + - It is the same issue Peter reported last month, that values he edits are not saved when the item gets archived + - I added myself the the edit and approval steps of [the collection](https://dspacetest.cgiar.org/handle/10568/81589) on DSpace Test and asked Udana to submit an item there for me to test +- Atmire got back to me about the duplicate data in Solr + - They want to arrange a time for us to do the stats processing so they can monitor it + - I proposed that I set everything up with a fresh Solr snapshot from CGSpace and then let them start the stats process + +## 2021-01-10 + +- Dominique from IWMI asked about API access to the IWMI collections + - A partner of theirs called AMCOW is interested in harvesting their publications + - I told her that they can use the REST API or OAI to get them from the [IWMI Journal Articles collection](https://cgspace.cgiar.org/handle/10568/36185): + - CGSpace REST API: https://cgspace.cgiar.org/rest/collections/c2618391-184e-4091-8a93-280fdf01238b/items + - CGSpace OAI API: https://cgspace.cgiar.org/oai/request?verb=ListRecords&metadataPrefix=oai_dc&set=col_10568_36185 +- Udana submitted an item to [the collection](https://dspacetest.cgiar.org/handle/10568/81589) on DSpace Test that I discussed last week + - I was able to take the task, add a new AGROVOC subject, approve the task, and commit it to archive + - The final item had my new AGROVOC subject, so I don't see the issue + - Perhaps the issue only occurs when we replace an existing field? Or only on IWMI fields? I don't know... + - Also there is this warning that occurs in the DSpace log during editing (and many other operations): + +```console +2021-01-10 10:03:27,692 WARN com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=1e8fb96c-b994-4fe2-8f0c-0a98ab138be0, ObjectType=(Unknown), ObjectID=null, TimeStamp=1610269383279, dispatcher=1544803905, detail=[null], transactionID="TX35636856957739531161091194485578658698") +``` + +- I filed [a bug on Atmire's issue tracker](https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=907) +- Peter asked me to move the CGIAR Gender Platform community to the top level of CGSpace, but I get an error when I use the community-filiator command: + +```console +$ dspace community-filiator --remove --parent=10568/66598 --child=10568/106605 +Loading @mire database changes for module MQM +Changes have been processed +Exception: null +java.lang.UnsupportedOperationException + at java.util.AbstractList.remove(AbstractList.java:161) + at java.util.AbstractList$Itr.remove(AbstractList.java:374) + at java.util.AbstractCollection.remove(AbstractCollection.java:293) + at org.dspace.administer.CommunityFiliator.defiliate(CommunityFiliator.java:264) + at org.dspace.administer.CommunityFiliator.main(CommunityFiliator.java:164) + at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) + at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) + at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) + at java.lang.reflect.Method.invoke(Method.java:498) + at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229) + at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81) +``` + +- There is apparently [a bug](https://jira.lyrasis.org/browse/DS-3914) in DSpace 6.x that makes community-filiator not work + - There is [a patch](https://github.com/DSpace/DSpace/pull/2178) for the as-of-yet unreleased DSpace 6.4 so I will try that +- Udana had asked about exporting IWMI's community on CGSpace, but we don't want to give him super admin permissions to do that + - I suggested that he use AReS, but there are some fields missing because we don't harvest them all + - I added a few more fields to the configuration and will start a fresh harvest. +- Start a re-index on AReS + - First delete the old Elasticsearch temp index: + +```console +$ curl -XDELETE 'http://localhost:9200/openrxv-items-temp' +# start indexing in AReS +``` + diff --git a/docs/2021-01/index.html b/docs/2021-01/index.html index 8e91c255c..964dfa57f 100644 --- a/docs/2021-01/index.html +++ b/docs/2021-01/index.html @@ -27,7 +27,7 @@ For example, this item has 51 views on CGSpace, but 0 on AReS - + @@ -60,9 +60,9 @@ For example, this item has 51 views on CGSpace, but 0 on AReS "@type": "BlogPosting", "headline": "January, 2021", "url": "https://alanorth.github.io/cgspace-notes/2021-01/", - "wordCount": "554", + "wordCount": "1025", "datePublished": "2021-01-03T10:13:54+02:00", - "dateModified": "2021-01-05T16:19:05+02:00", + "dateModified": "2021-01-05T19:56:15+02:00", "author": { "@type": "Person", "name": "Alan Orth" @@ -220,7 +220,86 @@ $ curl -XDELETE 'http://localhost:9200/openrxv-items-2021-01-04'
  • Import one item to CGSpace for Peter
  • - +

    2021-01-07

    + +

    2021-01-10

    + +
    2021-01-10 10:03:27,692 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=1e8fb96c-b994-4fe2-8f0c-0a98ab138be0, ObjectType=(Unknown), ObjectID=null, TimeStamp=1610269383279, dispatcher=1544803905, detail=[null], transactionID="TX35636856957739531161091194485578658698")
    +
    +
    $ dspace community-filiator --remove --parent=10568/66598 --child=10568/106605
    +Loading @mire database changes for module MQM
    +Changes have been processed
    +Exception: null
    +java.lang.UnsupportedOperationException
    +        at java.util.AbstractList.remove(AbstractList.java:161)
    +        at java.util.AbstractList$Itr.remove(AbstractList.java:374)
    +        at java.util.AbstractCollection.remove(AbstractCollection.java:293)
    +        at org.dspace.administer.CommunityFiliator.defiliate(CommunityFiliator.java:264)
    +        at org.dspace.administer.CommunityFiliator.main(CommunityFiliator.java:164)
    +        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    +        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    +        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    +        at java.lang.reflect.Method.invoke(Method.java:498)
    +        at org.dspace.app.launcher.ScriptLauncher.runOneCommand(ScriptLauncher.java:229)
    +        at org.dspace.app.launcher.ScriptLauncher.main(ScriptLauncher.java:81)
    +
    +
    $ curl -XDELETE 'http://localhost:9200/openrxv-items-temp'
    +# start indexing in AReS
    +
    diff --git a/docs/categories/index.html b/docs/categories/index.html index 058753d43..1250ab222 100644 --- a/docs/categories/index.html +++ b/docs/categories/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/index.html b/docs/categories/notes/index.html index dbe566da5..75fa75c20 100644 --- a/docs/categories/notes/index.html +++ b/docs/categories/notes/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/2/index.html b/docs/categories/notes/page/2/index.html index b4cf64408..62f442130 100644 --- a/docs/categories/notes/page/2/index.html +++ b/docs/categories/notes/page/2/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/3/index.html b/docs/categories/notes/page/3/index.html index 6c5659d6e..241f227c7 100644 --- a/docs/categories/notes/page/3/index.html +++ b/docs/categories/notes/page/3/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/4/index.html b/docs/categories/notes/page/4/index.html index 3d1049155..3fa291308 100644 --- a/docs/categories/notes/page/4/index.html +++ b/docs/categories/notes/page/4/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/categories/notes/page/5/index.html b/docs/categories/notes/page/5/index.html index 6453611ed..cff21db2e 100644 --- a/docs/categories/notes/page/5/index.html +++ b/docs/categories/notes/page/5/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/index.html b/docs/index.html index d00bc51fa..a5ce7c71e 100644 --- a/docs/index.html +++ b/docs/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/2/index.html b/docs/page/2/index.html index b3269aea6..bd3eaaf4e 100644 --- a/docs/page/2/index.html +++ b/docs/page/2/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/3/index.html b/docs/page/3/index.html index c89b7c021..b7531d18e 100644 --- a/docs/page/3/index.html +++ b/docs/page/3/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/4/index.html b/docs/page/4/index.html index 62ce25e66..b8a9229c4 100644 --- a/docs/page/4/index.html +++ b/docs/page/4/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/5/index.html b/docs/page/5/index.html index 3249bf32d..a8ca332e0 100644 --- a/docs/page/5/index.html +++ b/docs/page/5/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/6/index.html b/docs/page/6/index.html index b6d00e7b8..52aafa3f2 100644 --- a/docs/page/6/index.html +++ b/docs/page/6/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/page/7/index.html b/docs/page/7/index.html index a669b3ebf..6613c8145 100644 --- a/docs/page/7/index.html +++ b/docs/page/7/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/index.html b/docs/posts/index.html index 16d8a67eb..056382bac 100644 --- a/docs/posts/index.html +++ b/docs/posts/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/2/index.html b/docs/posts/page/2/index.html index 0512bda04..12ac175f4 100644 --- a/docs/posts/page/2/index.html +++ b/docs/posts/page/2/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/3/index.html b/docs/posts/page/3/index.html index 37fcb067e..90c3b51e4 100644 --- a/docs/posts/page/3/index.html +++ b/docs/posts/page/3/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/4/index.html b/docs/posts/page/4/index.html index 0d90a72af..d84a1c4f0 100644 --- a/docs/posts/page/4/index.html +++ b/docs/posts/page/4/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/5/index.html b/docs/posts/page/5/index.html index 57f873457..d3e2542ba 100644 --- a/docs/posts/page/5/index.html +++ b/docs/posts/page/5/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/6/index.html b/docs/posts/page/6/index.html index cf1eca3c0..afe7be688 100644 --- a/docs/posts/page/6/index.html +++ b/docs/posts/page/6/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/posts/page/7/index.html b/docs/posts/page/7/index.html index 34997dd4a..f82ae8a2e 100644 --- a/docs/posts/page/7/index.html +++ b/docs/posts/page/7/index.html @@ -10,7 +10,7 @@ - + diff --git a/docs/sitemap.xml b/docs/sitemap.xml index f221ad037..4999144b6 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -4,27 +4,27 @@ https://alanorth.github.io/cgspace-notes/categories/ - 2021-01-05T16:19:05+02:00 + 2021-01-05T19:56:15+02:00 https://alanorth.github.io/cgspace-notes/ - 2021-01-05T16:19:05+02:00 + 2021-01-05T19:56:15+02:00 https://alanorth.github.io/cgspace-notes/2021-01/ - 2021-01-05T16:19:05+02:00 + 2021-01-05T19:56:15+02:00 https://alanorth.github.io/cgspace-notes/categories/notes/ - 2021-01-05T16:19:05+02:00 + 2021-01-05T19:56:15+02:00 https://alanorth.github.io/cgspace-notes/posts/ - 2021-01-05T16:19:05+02:00 + 2021-01-05T19:56:15+02:00