Add notes for 2018-06-13

content/posts/2018-06.md

@@ -186,5 +186,38 @@ or(
     - https://dspacetest.cgiar.org/10568/96141
     - https://dspacetest.cgiar.org/10568/96118
     - https://dspacetest.cgiar.org/10568/96113
-  
+
+## 2018-06-13
+
+- Elizabeth from CIAT contacted me to ask if I could add ORCID identifiers to all of Robin Buruchara's items
+- I used my [add-orcid-identifiers-csv.py](https://gist.githubusercontent.com/alanorth/a49d85cd9c5dea89cddbe809813a7050/raw/f67b6e45a9a940732882ae4bb26897a9b245ef31/add-orcid-identifiers-csv.py) script:
+
+```
+$ ./add-orcid-identifiers-csv.py -i 2018-06-13-Robin-Buruchara.csv -db dspace -u dspace -p 'fuuu'
+```
+
+- The contents of `2018-06-13-Robin-Buruchara.csv` were:
+
+```
+dc.contributor.author,cg.creator.id
+"Buruchara, Robin",Robin Buruchara: 0000-0003-0934-1218
+"Buruchara, Robin A.",Robin Buruchara: 0000-0003-0934-1218
+```
+
+- On a hunch I checked to see if CGSpace's bitstream cleanup was working properly and of course it's broken:
+
+```
+$ dspace cleanup -v
+...
+Error: ERROR: update or delete on table "bitstream" violates foreign key constraint "bundle_primary_bitstream_id_fkey" on table "bundle"
+  Detail: Key (bitstream_id)=(152402) is still referenced from table "bundle".
+```
+
+- As always, the solution is to delete that ID manually in PostgreSQL:
+
+```
+$ psql dspace -c 'update bundle set primary_bitstream_id=NULL where primary_bitstream_id in (152402);'
+UPDATE 1
+```
+
 # vim: set sw=2 ts=2:

docs/2018-06/index.html

@@ -41,7 +41,7 @@ sys     2m7.289s
 
 <meta property="article:published_time" content="2018-06-04T19:49:54-07:00"/>
 
-<meta property="article:modified_time" content="2018-06-11T15:21:14&#43;03:00"/>
+<meta property="article:modified_time" content="2018-06-12T10:42:43&#43;03:00"/>
 
 
 
@@ -93,9 +93,9 @@ sys     2m7.289s
   "@type": "BlogPosting",
   "headline": "June, 2018",
   "url": "https://alanorth.github.io/cgspace-notes/2018-06/",
-  "wordCount": "1462",
+  "wordCount": "1587",
   "datePublished": "2018-06-04T19:49:54-07:00",
-  "dateModified": "2018-06-11T15:21:14&#43;03:00",
+  "dateModified": "2018-06-12T10:42:43&#43;03:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -377,11 +377,47 @@ Failed to startup the DSpace Service Manager: failure starting up spring service
 <li><a href="https://dspacetest.cgiar.org/10568/96184">https://dspacetest.cgiar.org/10568/96184</a></li>
 <li><a href="https://dspacetest.cgiar.org/10568/96141">https://dspacetest.cgiar.org/10568/96141</a></li>
 <li><a href="https://dspacetest.cgiar.org/10568/96118">https://dspacetest.cgiar.org/10568/96118</a></li>
-<li><a href="https://dspacetest.cgiar.org/10568/96113">https://dspacetest.cgiar.org/10568/96113</a>
+<li><a href="https://dspacetest.cgiar.org/10568/96113">https://dspacetest.cgiar.org/10568/96113</a></li>
-<br /></li>
 </ul></li>
 </ul>
 
+<h2 id="2018-06-13">2018-06-13</h2>
+
+<ul>
+<li>Elizabeth from CIAT contacted me to ask if I could add ORCID identifiers to all of Robin Buruchara&rsquo;s items</li>
+<li>I used my <a href="https://gist.githubusercontent.com/alanorth/a49d85cd9c5dea89cddbe809813a7050/raw/f67b6e45a9a940732882ae4bb26897a9b245ef31/add-orcid-identifiers-csv.py">add-orcid-identifiers-csv.py</a> script:</li>
+</ul>
+
+<pre><code>$ ./add-orcid-identifiers-csv.py -i 2018-06-13-Robin-Buruchara.csv -db dspace -u dspace -p 'fuuu'
+</code></pre>
+
+<ul>
+<li>The contents of <code>2018-06-13-Robin-Buruchara.csv</code> were:</li>
+</ul>
+
+<pre><code>dc.contributor.author,cg.creator.id
+&quot;Buruchara, Robin&quot;,Robin Buruchara: 0000-0003-0934-1218
+&quot;Buruchara, Robin A.&quot;,Robin Buruchara: 0000-0003-0934-1218
+</code></pre>
+
+<ul>
+<li>On a hunch I checked to see if CGSpace&rsquo;s bitstream cleanup was working properly and of course it&rsquo;s broken:</li>
+</ul>
+
+<pre><code>$ dspace cleanup -v
+...
+Error: ERROR: update or delete on table &quot;bitstream&quot; violates foreign key constraint &quot;bundle_primary_bitstream_id_fkey&quot; on table &quot;bundle&quot;
+  Detail: Key (bitstream_id)=(152402) is still referenced from table &quot;bundle&quot;.
+</code></pre>
+
+<ul>
+<li>As always, the solution is to delete that ID manually in PostgreSQL:</li>
+</ul>
+
+<pre><code>$ psql dspace -c 'update bundle set primary_bitstream_id=NULL where primary_bitstream_id in (152402);'
+UPDATE 1
+</code></pre>
+
 <h1 id="vim-set-sw-2-ts-2">vim: set sw=2 ts=2:</h1>
 
   

docs/sitemap.xml

@@ -4,7 +4,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/2018-06/</loc>
-    <lastmod>2018-06-11T15:21:14+03:00</lastmod>
+    <lastmod>2018-06-12T10:42:43+03:00</lastmod>
   </url>
   
   <url>
@@ -169,7 +169,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/</loc>
-    <lastmod>2018-06-11T15:21:14+03:00</lastmod>
+    <lastmod>2018-06-12T10:42:43+03:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -180,7 +180,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
-    <lastmod>2018-06-11T15:21:14+03:00</lastmod>
+    <lastmod>2018-06-12T10:42:43+03:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -192,13 +192,13 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
-    <lastmod>2018-06-11T15:21:14+03:00</lastmod>
+    <lastmod>2018-06-12T10:42:43+03:00</lastmod>
     <priority>0</priority>
   </url>
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
-    <lastmod>2018-06-11T15:21:14+03:00</lastmod>
+    <lastmod>2018-06-12T10:42:43+03:00</lastmod>
     <priority>0</priority>
   </url>