Update notes

content/post/2017-11.md

@@ -640,7 +640,7 @@ dspace6=# CREATE EXTENSION pgcrypto;
 
 - Also, local settings are no longer in `build.properties`, they are now in `local.cfg`
 - I'm not sure if we can use separate profiles like we did before with `mvn -Denv=blah` to use blah.properties
-- It seems we need to use "system properties" to override settings, ie: `-Ddspace.dir=/Users/aorth/dspace7`
+- It seems we need to use "system properties" to override settings, ie: `-Ddspace.dir=/Users/aorth/dspace6`
 
 ## 2017-11-15
 

content/post/2018-01.md

@@ -488,3 +488,31 @@ cache_alignment : 64
  111535 2607:fa98:40:9:26b6:fdff:feff:1c96
  161797 2607:fa98:40:9:26b6:fdff:feff:1888
 ```
+
+- Wow, I just figured out how to set the application name of each database pool in the JNDI config of Tomcat's `server.xml`:
+
+```
+<Resource name="jdbc/dspaceWeb" auth="Container" type="javax.sql.DataSource"
+          driverClassName="org.postgresql.Driver"
+          url="jdbc:postgresql://localhost:5432/dspacetest?ApplicationName=dspaceWeb"
+          username="dspace"
+          password="dspace"
+          initialSize='5'
+          maxActive='75'
+          maxIdle='15'
+          minIdle='5'
+          maxWait='5000'
+          validationQuery='SELECT 1'
+          testOnBorrow='true' />
+```
+
+- So theoretically I could name each connection "xmlui" or "dspaceWeb" or something meaningful and it would show up in PostgreSQL's `pg_stat_activity` table!
+- This would be super helpful for figuring out where load was coming from (now I wonder if I could figure out how to graph this)
+- Also, I realized that the `db.jndi` parameter in dspace.cfg needs to match the `name` value in your applicaiton's context—not the `global` one
+- Ah hah! Also, I can name the default DSpace connection pool in dspace.cfg as well, like:
+
+```
+db.url = jdbc:postgresql://localhost:5432/dspacetest?ApplicationName=dspaceDefault
+```
+
+- With that it is super easy to see where PostgreSQL connections are coming from in `pg_stat_activity`

public/2015-11/index.html

@@ -52,7 +52,7 @@ $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspac
 
 
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public/2015-12/index.html

@@ -54,7 +54,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
 
 
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public/2016-01/index.html

@@ -44,7 +44,7 @@ Update GitHub wiki for documentation of maintenance tasks.
 
 
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public/2016-02/index.html

@@ -58,7 +58,7 @@ Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE&r
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2016-03/index.html

@@ -44,7 +44,7 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2016-04/index.html

@@ -48,7 +48,7 @@ Also, I noticed the checker log has some errors we should pay attention to:
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2016-05/index.html

@@ -52,7 +52,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2016-06/index.html

@@ -50,7 +50,7 @@ Working on second phase of metadata migration, looks like this will work for mov
 
 
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public/2016-07/index.html

@@ -66,7 +66,7 @@ In this case the select query was showing 95 results before the update
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2016-08/index.html

@@ -60,7 +60,7 @@ $ git rebase -i dspace-5.5
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2016-09/index.html

@@ -52,7 +52,7 @@ $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=or
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2016-10/index.html

@@ -60,7 +60,7 @@ I exported a random item’s metadata as CSV, deleted all columns except id
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2016-11/index.html

@@ -44,7 +44,7 @@ Add dc.type to the output options for Atmire’s Listings and Reports module
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2016-12/index.html

@@ -68,7 +68,7 @@ Another worrying error from dspace.log is:
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-01/index.html

@@ -44,7 +44,7 @@ I asked on the dspace-tech mailing list because it seems to be broken, and actua
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-02/index.html

@@ -72,7 +72,7 @@ Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-03/index.html

@@ -76,7 +76,7 @@ $ identify ~/Desktop/alc_contrastes_desafios.jpg
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-04/index.html

@@ -62,7 +62,7 @@ $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Th
 
 
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-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-05/index.html

@@ -28,7 +28,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="May, 2017"/>
 <meta name="twitter:description" content="2017-05-01  ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items:  https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683   2017-05-02  Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request  2017-05-04  Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-06/index.html

@@ -28,7 +28,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="June, 2017"/>
 <meta name="twitter:description" content="2017-06-01  After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-07/index.html

@@ -56,7 +56,7 @@ We can use PostgreSQL’s extended output format (-x) plus sed to format the
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-08/index.html

@@ -76,7 +76,7 @@ Then I cleaned up the author authorities and HTML characters in OpenRefine and s
 
 
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-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-09/index.html

@@ -52,7 +52,7 @@ Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account
 
 
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-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-10/index.html

@@ -56,7 +56,7 @@ Add Katherine Lutz to the groups for content submission and edit steps of the CG
 
 
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-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2017-11/index.html

@@ -76,7 +76,7 @@ COPY 54701
 
 
 "/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     
@@ -863,7 +863,7 @@ dspace6=# CREATE EXTENSION pgcrypto;
 <ul>
 <li>Also, local settings are no longer in <code>build.properties</code>, they are now in <code>local.cfg</code></li>
 <li>I&rsquo;m not sure if we can use separate profiles like we did before with <code>mvn -Denv=blah</code> to use blah.properties</li>
-<li>It seems we need to use &ldquo;system properties&rdquo; to override settings, ie: <code>-Ddspace.dir=/Users/aorth/dspace7</code></li>
+<li>It seems we need to use &ldquo;system properties&rdquo; to override settings, ie: <code>-Ddspace.dir=/Users/aorth/dspace6</code></li>
 </ul>
 
 <h2 id="2017-11-15">2017-11-15</h2>

public/2017-12/index.html

@@ -46,7 +46,7 @@ The list of connections to XMLUI and REST API for today:
 
 
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+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/2018-01/index.html

@@ -92,7 +92,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
 
 <meta property="article:published_time" content="2018-01-02T08:35:54-08:00"/>
 
-<meta property="article:modified_time" content="2018-01-11T08:36:59&#43;02:00"/>
+<meta property="article:modified_time" content="2018-01-11T10:42:35&#43;02:00"/>
 
 
 
@@ -184,7 +184,7 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
 
 
 "/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     
@@ -194,9 +194,9 @@ Danny wrote to ask for help renewing the wildcard ilri.org certificate and I adv
   "@type": "BlogPosting",
   "headline": "January, 2018",
   "url": "https://alanorth.github.io/cgspace-notes/2018-01/",
-  "wordCount": "2324",
+  "wordCount": "2467",
   "datePublished": "2018-01-02T08:35:54-08:00",
-  "dateModified": "2018-01-11T08:36:59&#43;02:00",
+  "dateModified": "2018-01-11T10:42:35&#43;02:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -789,6 +789,38 @@ cache_alignment : 64
  161797 2607:fa98:40:9:26b6:fdff:feff:1888
 </code></pre>
 
+<ul>
+<li>Wow, I just figured out how to set the application name of each database pool in the JNDI config of Tomcat&rsquo;s <code>server.xml</code>:</li>
+</ul>
+
+<pre><code>&lt;Resource name=&quot;jdbc/dspaceWeb&quot; auth=&quot;Container&quot; type=&quot;javax.sql.DataSource&quot;
+          driverClassName=&quot;org.postgresql.Driver&quot;
+          url=&quot;jdbc:postgresql://localhost:5432/dspacetest?ApplicationName=dspaceWeb&quot;
+          username=&quot;dspace&quot;
+          password=&quot;dspace&quot;
+          initialSize='5'
+          maxActive='75'
+          maxIdle='15'
+          minIdle='5'
+          maxWait='5000'
+          validationQuery='SELECT 1'
+          testOnBorrow='true' /&gt;
+</code></pre>
+
+<ul>
+<li>So theoretically I could name each connection &ldquo;xmlui&rdquo; or &ldquo;dspaceWeb&rdquo; or something meaningful and it would show up in PostgreSQL&rsquo;s <code>pg_stat_activity</code> table!</li>
+<li>This would be super helpful for figuring out where load was coming from (now I wonder if I could figure out how to graph this)</li>
+<li>Also, I realized that the <code>db.jndi</code> parameter in dspace.cfg needs to match the <code>name</code> value in your applicaiton&rsquo;s context—not the <code>global</code> one</li>
+<li>Ah hah! Also, I can name the default DSpace connection pool in dspace.cfg as well, like:</li>
+</ul>
+
+<pre><code>db.url = jdbc:postgresql://localhost:5432/dspacetest?ApplicationName=dspaceDefault
+</code></pre>
+
+<ul>
+<li>With that it is super easy to see where PostgreSQL connections are coming from in <code>pg_stat_activity</code></li>
+</ul>
+
   
 
   

public/categories/notes/index.html

@@ -25,7 +25,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/cgiar-library-migration/index.html

@@ -28,7 +28,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="CGIAR Library Migration"/>
 <meta name="twitter:description" content="Notes on the migration of the CGIAR Library to CGSpace"/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/index.html

@@ -25,7 +25,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/page/2/index.html

@@ -25,7 +25,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/page/3/index.html

@@ -25,7 +25,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="CGSpace Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/post/index.html

@@ -25,7 +25,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/post/page/2/index.html

@@ -25,7 +25,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/post/page/3/index.html

@@ -25,7 +25,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="Posts"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/robots.txt

@@ -31,7 +31,7 @@ Disallow: /cgspace-notes/2015-12/
 Disallow: /cgspace-notes/2015-11/
 Disallow: /cgspace-notes/
 Disallow: /cgspace-notes/categories/
-Disallow: /cgspace-notes/categories/notes/
 Disallow: /cgspace-notes/tags/notes/
+Disallow: /cgspace-notes/categories/notes/
 Disallow: /cgspace-notes/post/
 Disallow: /cgspace-notes/tags/

public/sitemap.xml

@@ -4,7 +4,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/2018-01/</loc>
-    <lastmod>2018-01-11T08:36:59+02:00</lastmod>
+    <lastmod>2018-01-11T10:42:35+02:00</lastmod>
   </url>
   
   <url>
@@ -144,7 +144,7 @@
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/</loc>
-    <lastmod>2018-01-11T08:36:59+02:00</lastmod>
+    <lastmod>2018-01-11T10:42:35+02:00</lastmod>
     <priority>0</priority>
   </url>
   
@@ -153,27 +153,27 @@
     <priority>0</priority>
   </url>
   
+  <url>
+    <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
+    <lastmod>2018-01-11T10:42:35+02:00</lastmod>
+    <priority>0</priority>
+  </url>
+  
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
     <lastmod>2017-09-28T12:00:49+03:00</lastmod>
     <priority>0</priority>
   </url>
   
-  <url>
-    <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
-    <lastmod>2018-01-11T08:36:59+02:00</lastmod>
-    <priority>0</priority>
-  </url>
-  
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/post/</loc>
-    <lastmod>2018-01-11T08:36:59+02:00</lastmod>
+    <lastmod>2018-01-11T10:42:35+02:00</lastmod>
     <priority>0</priority>
   </url>
   
   <url>
     <loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
-    <lastmod>2018-01-11T08:36:59+02:00</lastmod>
+    <lastmod>2018-01-11T10:42:35+02:00</lastmod>
     <priority>0</priority>
   </url>
   

public/tags/notes/index.html

@@ -25,7 +25,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/tags/notes/page/2/index.html

@@ -25,7 +25,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />
 
 
     

public/tags/notes/page/3/index.html

@@ -25,7 +25,7 @@
 
 <meta name="twitter:card" content="summary"/><meta name="twitter:title" content="Notes"/>
 <meta name="twitter:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository."/>
-<meta name="generator" content="Hugo 0.32.3" />
+<meta name="generator" content="Hugo 0.32.4" />