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Update notes for 2018-10-11

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Alan Orth 2018-10-11 11:17:07 +03:00
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content/posts/2018-10.md
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@ -174,7 +174,6 @@ org.im4java.core.InfoException: org.im4java.core.CommandException: org.im4java.c
- This works, but I'm not sure what ImageMagick's long-term plan is if they are going to disable ALL image formats... - This works, but I'm not sure what ImageMagick's long-term plan is if they are going to disable ALL image formats...
- I suppose I need to enable a workaround for this in Ansible? - I suppose I need to enable a workaround for this in Ansible?
- Also I note that for a few days the item views on DSpace Test are broken... I think Sisay must have been doing something
## 2018-10-11 ## 2018-10-11
@ -186,4 +185,38 @@ dspace=# \COPY (SELECT DISTINCT text_value, count(*) FROM metadatavalue WHERE me
COPY 1500 COPY 1500
``` ```
- Give WorldFish advice about Handles because they are talking to some company called KnowledgeArc who recommends they do not use Handles!
- Last week I emailed Altmetric to ask if their software would notice mentions of our Handle in the format "handle:10568/80775" because I noticed that the [Land Portal does this](https://landportal.org/library/resources/handle1056880775/unlocking-farming-potential-bangladesh%E2%80%99-polders)
- Altmetric support responded to say no, but the reason is that Land Portal is doing even more strange stuff by not using `<meta>` tags in their page header, and using "dct:identifier" property instead of "dc:identifier"
- I re-created my local DSpace databse container using [podman](https://github.com/containers/libpod) instead of Docker:
```
$ mkdir -p ~/.local/lib/containers/volumes/dspacedb_data
$ sudo podman create --name dspacedb -v /home/aorth/.local/lib/containers/volumes/dspacedb_data:/var/lib/postgresql/data -e POSTGRES_PASSWORD=postgres -p 5432:5432 -d postgres:9.6-alpine
$ sudo podman start dspacedb
$ createuser -h localhost -U postgres --pwprompt dspacetest
$ createdb -h localhost -U postgres -O dspacetest --encoding=UNICODE dspacetest
$ psql -h localhost -U postgres dspacetest -c 'alter user dspacetest superuser;'
$ pg_restore -h localhost -U postgres -d dspacetest -O --role=dspacetest -h localhost ~/Downloads/cgspace_2018-10-11.backup
$ psql -h localhost -U postgres dspacetest -c 'alter user dspacetest nosuperuser;'
$ psql -h localhost -U postgres -f ~/src/git/DSpace/dspace/etc/postgres/update-sequences.sql dspacetest
```
- I tried to make an Artifactory in podman, but it seems to have problems because Artifactory is distributed on the Bintray repository
- I can pull the `docker.bintray.io/jfrog/artifactory-oss:latest` image, but not start it
- I decided to use a Sonatype Nexus repository instead:
```
$ mkdir -p ~/.local/lib/containers/volumes/nexus_data
$ sudo podman run --name nexus -d -v /home/aorth/.local/lib/containers/volumes/nexus_data:/nexus_data -p 8081:8081 sonatype/nexus3
```
- With a few changes to my local Maven `settings.xml` it is working well
- Generate a list of the top 10,000 authors for Peter Ballantyne to look through:
```
dspace=# \COPY (SELECT DISTINCT text_value, count(*) FROM metadatavalue WHERE metadata_field_id = 3 AND resource_type_id = 2 GROUP BY text_value ORDER BY count DESC LIMIT 10000) to /tmp/2018-10-11-top-10000-authors.csv WITH CSV HEADER;
COPY 10000
```
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->

44
docs/2018-10/index.html
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@ -9,7 +9,7 @@
<meta property="og:description" content="2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Oct/2018&quot; | awk &#39;{print $1} &#39; | sort | uniq -c | sort -n | tail -n 10 933 40." /> <meta property="og:description" content="2018-10-01 Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now 2018-10-03 I see Moayad was busy collecting item views and downloads from CGSpace yesterday: # zcat --force /var/log/nginx/*.log /var/log/nginx/*.log.1 | grep -E &quot;02/Oct/2018&quot; | awk &#39;{print $1} &#39; | sort | uniq -c | sort -n | tail -n 10 933 40." />
<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2018-10/" /><meta property="article:published_time" content="2018-10-01T22:31:54&#43;03:00"/> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2018-10/" /><meta property="article:published_time" content="2018-10-01T22:31:54&#43;03:00"/>
<meta property="article:modified_time" content="2018-10-10T13:33:00&#43;03:00"/> <meta property="article:modified_time" content="2018-10-11T09:32:54&#43;03:00"/>
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="October, 2018"/> <meta name="twitter:title" content="October, 2018"/>
@ -24,9 +24,9 @@
"@type": "BlogPosting", "@type": "BlogPosting",
"headline": "October, 2018", "headline": "October, 2018",
"url": "https://alanorth.github.io/cgspace-notes/2018-10/", "url": "https://alanorth.github.io/cgspace-notes/2018-10/",
"wordCount": "1092", "wordCount": "1368",
"datePublished": "2018-10-01T22:31:54&#43;03:00", "datePublished": "2018-10-01T22:31:54&#43;03:00",
"dateModified": "2018-10-10T13:33:00&#43;03:00", "dateModified": "2018-10-11T09:32:54&#43;03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -289,7 +289,6 @@ org.im4java.core.InfoException: org.im4java.core.CommandException: org.im4java.c
<ul> <ul>
<li>This works, but I&rsquo;m not sure what ImageMagick&rsquo;s long-term plan is if they are going to disable ALL image formats&hellip;</li> <li>This works, but I&rsquo;m not sure what ImageMagick&rsquo;s long-term plan is if they are going to disable ALL image formats&hellip;</li>
<li>I suppose I need to enable a workaround for this in Ansible?</li> <li>I suppose I need to enable a workaround for this in Ansible?</li>
<li>Also I note that for a few days the item views on DSpace Test are broken&hellip; I think Sisay must have been doing something</li>
</ul> </ul>
<h2 id="2018-10-11">2018-10-11</h2> <h2 id="2018-10-11">2018-10-11</h2>
@ -303,6 +302,43 @@ org.im4java.core.InfoException: org.im4java.core.CommandException: org.im4java.c
COPY 1500 COPY 1500
</code></pre> </code></pre>
<ul>
<li>Give WorldFish advice about Handles because they are talking to some company called KnowledgeArc who recommends they do not use Handles!</li>
<li>Last week I emailed Altmetric to ask if their software would notice mentions of our Handle in the format &ldquo;handle:<sup>10568</sup>&frasl;<sub>80775</sub>&rdquo; because I noticed that the <a href="https://landportal.org/library/resources/handle1056880775/unlocking-farming-potential-bangladesh%E2%80%99-polders">Land Portal does this</a></li>
<li>Altmetric support responded to say no, but the reason is that Land Portal is doing even more strange stuff by not using <code>&lt;meta&gt;</code> tags in their page header, and using &ldquo;dct:identifier&rdquo; property instead of &ldquo;dc:identifier&rdquo;</li>
<li>I re-created my local DSpace databse container using <a href="https://github.com/containers/libpod">podman</a> instead of Docker:</li>
</ul>
<pre><code>$ mkdir -p ~/.local/lib/containers/volumes/dspacedb_data
$ sudo podman create --name dspacedb -v /home/aorth/.local/lib/containers/volumes/dspacedb_data:/var/lib/postgresql/data -e POSTGRES_PASSWORD=postgres -p 5432:5432 -d postgres:9.6-alpine
$ sudo podman start dspacedb
$ createuser -h localhost -U postgres --pwprompt dspacetest
$ createdb -h localhost -U postgres -O dspacetest --encoding=UNICODE dspacetest
$ psql -h localhost -U postgres dspacetest -c 'alter user dspacetest superuser;'
$ pg_restore -h localhost -U postgres -d dspacetest -O --role=dspacetest -h localhost ~/Downloads/cgspace_2018-10-11.backup
$ psql -h localhost -U postgres dspacetest -c 'alter user dspacetest nosuperuser;'
$ psql -h localhost -U postgres -f ~/src/git/DSpace/dspace/etc/postgres/update-sequences.sql dspacetest
</code></pre>
<ul>
<li>I tried to make an Artifactory in podman, but it seems to have problems because Artifactory is distributed on the Bintray repository</li>
<li>I can pull the <code>docker.bintray.io/jfrog/artifactory-oss:latest</code> image, but not start it</li>
<li>I decided to use a Sonatype Nexus repository instead:</li>
</ul>
<pre><code>$ mkdir -p ~/.local/lib/containers/volumes/nexus_data
$ sudo podman run --name nexus -d -v /home/aorth/.local/lib/containers/volumes/nexus_data:/nexus_data -p 8081:8081 sonatype/nexus3
</code></pre>
<ul>
<li>With a few changes to my local Maven <code>settings.xml</code> it is working well</li>
<li>Generate a list of the top 10,000 authors for Peter Ballantyne to look through:</li>
</ul>
<pre><code>dspace=# \COPY (SELECT DISTINCT text_value, count(*) FROM metadatavalue WHERE metadata_field_id = 3 AND resource_type_id = 2 GROUP BY text_value ORDER BY count DESC LIMIT 10000) to /tmp/2018-10-11-top-10000-authors.csv WITH CSV HEADER;
COPY 10000
</code></pre>
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->

10
docs/sitemap.xml
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@ -4,7 +4,7 @@
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/2018-10/</loc> <loc>https://alanorth.github.io/cgspace-notes/2018-10/</loc>
<lastmod>2018-10-10T13:33:00+03:00</lastmod> <lastmod>2018-10-11T09:32:54+03:00</lastmod>
</url> </url>
<url> <url>
@ -189,7 +189,7 @@
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/</loc>
<lastmod>2018-10-10T13:33:00+03:00</lastmod> <lastmod>2018-10-11T09:32:54+03:00</lastmod>
<priority>0</priority> <priority>0</priority>
</url> </url>
@ -200,7 +200,7 @@
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/tags/notes/</loc>
<lastmod>2018-10-10T13:33:00+03:00</lastmod> <lastmod>2018-10-11T09:32:54+03:00</lastmod>
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@ -212,13 +212,13 @@
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc> <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
<lastmod>2018-10-10T13:33:00+03:00</lastmod> <lastmod>2018-10-11T09:32:54+03:00</lastmod>
<priority>0</priority> <priority>0</priority>
</url> </url>
<url> <url>
<loc>https://alanorth.github.io/cgspace-notes/tags/</loc> <loc>https://alanorth.github.io/cgspace-notes/tags/</loc>
<lastmod>2018-10-10T13:33:00+03:00</lastmod> <lastmod>2018-10-11T09:32:54+03:00</lastmod>
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