Add notes for 2022-07-08

content/posts/2022-07.md

@@ -118,4 +118,53 @@ UPDATE 104
 
 - I will also have to remove "Academicians" from input-forms.xml
 
-<!-- vim: set sw=2 ts=2: -->
+
+## 2022-07-07
+
+- Finalize lists of non-AGROVOC subjects in CGSpace that I started last week
+  - I used the [SQL helper functions](https://wiki.lyrasis.org/display/DSPACE/Helper+SQL+functions+for+DSpace+6) to find the collections where each term was used:
+
+```console
+localhost/dspace= ☘ SELECT DISTINCT(ds6_item2collectionhandle(dspace_object_id)) AS collection, COUNT(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND LOWER(text_value) = 'water demand' GROUP BY collection ORDER BY count DESC LIMIT 5;
+ collection  │ count 
+─────────────┼───────
+ 10568/36178 │    56
+ 10568/36185 │    46
+ 10568/36181 │    35
+ 10568/36188 │    28
+ 10568/36179 │    21
+(5 rows)
+```
+
+- For now I only did terms from my list that had 100 or more occurrences in CGSpace
+  - This leaves us with thirty-six terms that I will send to Sara Jani and Elizabeth Arnaud for evaluating possible inclusion to AGROVOC
+- Write to some submitters from CIAT, Bioversity, and CCAFS to ask if they are still uploading new items with their legacy subject fields on CGSpace
+  - We want to remove them from the submission form to create space for new fields
+- Update one term I noticed people using that was close to AGROVOC:
+
+```console
+dspace=# UPDATE metadatavalue SET text_value='development policies' WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=187 AND text_value='development policy';
+UPDATE 108
+```
+
+- After contacting some editors I removed some old metadata fields from the submission form and browse indexes:
+  - Bioversity subject (`cg.subject.bioversity`)
+  - CCAFS phase 1 project tag (`cg.identifier.ccafsproject`)
+  - CIAT project tag (`cg.identifier.ciatproject`)
+  - CIAT subject (`cg.subject.ciat`)
+- Work on cleaning and proofing forty-six AfricaRice items for CGSpace
+  - Last week we identified some duplicates so I removed those
+  - The data is of mediocre quality
+  - I've been fixing citations (nitpick), adding licenses, adding volume/issue/extent, fixing DOIs, and adding some AGROVOC subjects
+  - I even found titles that have typos, looking something like OCR errors...
+
+## 2022-07-08
+
+- Finalize the cleaning and proofing of AfricaRice records
+  - I found two suspicious items that claim to have been published but I can't find in the respective journals, so I removed those
+  - I uploaded the forty-four items to [DSpace Test](https://dspacetest.cgiar.org/handle/10568/119135)
+- Margarita from CCAFS said they are no longer using the CCAFS subject or CCAFS phase 2 project tag
+  - I removed these from the input-form.xml and Discovery facets:
+    - cg.identifier.ccafsprojectpii
+    - cg.subject.cifor
+  - For now we will keep them in the search filters

docs/2022-07/index.html

@@ -19,7 +19,7 @@ Also, the trgm functions I’ve used before are case insensitive, but Levens
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 <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-07/" />
 <meta property="article:published_time" content="2022-07-02T14:07:36+03:00" />
-<meta property="article:modified_time" content="2022-07-04T22:10:02+03:00" />
+<meta property="article:modified_time" content="2022-07-07T10:02:04+03:00" />
 
 
 
@@ -44,9 +44,9 @@ Also, the trgm functions I&rsquo;ve used before are case insensitive, but Levens
   "@type": "BlogPosting",
   "headline": "July, 2022",
   "url": "https://alanorth.github.io/cgspace-notes/2022-07/",
-  "wordCount": "739",
+  "wordCount": "1095",
   "datePublished": "2022-07-02T14:07:36+03:00",
-  "dateModified": "2022-07-04T22:10:02+03:00",
+  "dateModified": "2022-07-07T10:02:04+03:00",
   "author": {
     "@type": "Person",
     "name": "Alan Orth"
@@ -246,7 +246,76 @@ Also, the trgm functions I&rsquo;ve used before are case insensitive, but Levens
 </span></span></code></pre></div><ul>
 <li>I will also have to remove &ldquo;Academicians&rdquo; from input-forms.xml</li>
 </ul>
-<!-- raw HTML omitted -->
+<h2 id="2022-07-07">2022-07-07</h2>
+<ul>
+<li>Finalize lists of non-AGROVOC subjects in CGSpace that I started last week
+<ul>
+<li>I used the <a href="https://wiki.lyrasis.org/display/DSPACE/Helper+SQL+functions+for+DSpace+6">SQL helper functions</a> to find the collections where each term was used:</li>
+</ul>
+</li>
+</ul>
+<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspace= ☘ SELECT DISTINCT(ds6_item2collectionhandle(dspace_object_id)) AS collection, COUNT(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND LOWER(text_value) = &#39;water demand&#39; GROUP BY collection ORDER BY count DESC LIMIT 5;
+</span></span><span style="display:flex;"><span> collection  │ count 
+</span></span><span style="display:flex;"><span>─────────────┼───────
+</span></span><span style="display:flex;"><span> 10568/36178 │    56
+</span></span><span style="display:flex;"><span> 10568/36185 │    46
+</span></span><span style="display:flex;"><span> 10568/36181 │    35
+</span></span><span style="display:flex;"><span> 10568/36188 │    28
+</span></span><span style="display:flex;"><span> 10568/36179 │    21
+</span></span><span style="display:flex;"><span>(5 rows)
+</span></span></code></pre></div><ul>
+<li>For now I only did terms from my list that had 100 or more occurrences in CGSpace
+<ul>
+<li>This leaves us with thirty-six terms that I will send to Sara Jani and Elizabeth Arnaud for evaluating possible inclusion to AGROVOC</li>
+</ul>
+</li>
+<li>Write to some submitters from CIAT, Bioversity, and CCAFS to ask if they are still uploading new items with their legacy subject fields on CGSpace
+<ul>
+<li>We want to remove them from the submission form to create space for new fields</li>
+</ul>
+</li>
+<li>Update one term I noticed people using that was close to AGROVOC:</li>
+</ul>
+<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>dspace=# UPDATE metadatavalue SET text_value=&#39;development policies&#39; WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=187 AND text_value=&#39;development policy&#39;;
+</span></span><span style="display:flex;"><span>UPDATE 108
+</span></span></code></pre></div><ul>
+<li>After contacting some editors I removed some old metadata fields from the submission form and browse indexes:
+<ul>
+<li>Bioversity subject (<code>cg.subject.bioversity</code>)</li>
+<li>CCAFS phase 1 project tag (<code>cg.identifier.ccafsproject</code>)</li>
+<li>CIAT project tag (<code>cg.identifier.ciatproject</code>)</li>
+<li>CIAT subject (<code>cg.subject.ciat</code>)</li>
+</ul>
+</li>
+<li>Work on cleaning and proofing forty-six AfricaRice items for CGSpace
+<ul>
+<li>Last week we identified some duplicates so I removed those</li>
+<li>The data is of mediocre quality</li>
+<li>I&rsquo;ve been fixing citations (nitpick), adding licenses, adding volume/issue/extent, fixing DOIs, and adding some AGROVOC subjects</li>
+<li>I even found titles that have typos, looking something like OCR errors&hellip;</li>
+</ul>
+</li>
+</ul>
+<h2 id="2022-07-08">2022-07-08</h2>
+<ul>
+<li>Finalize the cleaning and proofing of AfricaRice records
+<ul>
+<li>I found two suspicious items that claim to have been published but I can&rsquo;t find in the respective journals, so I removed those</li>
+<li>I uploaded the forty-four items to <a href="https://dspacetest.cgiar.org/handle/10568/119135">DSpace Test</a></li>
+</ul>
+</li>
+<li>Margarita from CCAFS said they are no longer using the CCAFS subject or CCAFS phase 2 project tag
+<ul>
+<li>I removed these from the input-form.xml and Discovery facets:
+<ul>
+<li>cg.identifier.ccafsprojectpii</li>
+<li>cg.subject.cifor</li>
+</ul>
+</li>
+<li>For now we will keep them in the search filters</li>
+</ul>
+</li>
+</ul>
 
   
 

docs/categories/index.html

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