From 07ed75dc808034383beeac7b46650f8c874a1ec6 Mon Sep 17 00:00:00 2001 From: Alan Orth Date: Tue, 1 Dec 2020 19:15:48 +0200 Subject: [PATCH] Add notes for 2020-12-01 --- content/posts/2020-12.md | 24 +++ content/posts/cgspace-dspace6-upgrade.md | 2 +- docs/2015-11/index.html | 4 +- docs/2015-12/index.html | 4 +- docs/2016-01/index.html | 4 +- docs/2016-02/index.html | 4 +- docs/2016-03/index.html | 4 +- docs/2016-04/index.html | 4 +- docs/2016-05/index.html | 4 +- docs/2016-06/index.html | 4 +- docs/2016-07/index.html | 4 +- docs/2016-08/index.html | 4 +- docs/2016-09/index.html | 4 +- docs/2016-10/index.html | 4 +- docs/2016-11/index.html | 4 +- docs/2016-12/index.html | 4 +- docs/2017-01/index.html | 4 +- docs/2017-02/index.html | 4 +- docs/2017-03/index.html | 4 +- docs/2017-04/index.html | 4 +- docs/2017-05/index.html | 4 +- docs/2017-06/index.html | 4 +- docs/2017-07/index.html | 4 +- docs/2017-08/index.html | 4 +- docs/2017-09/index.html | 4 +- docs/2017-10/index.html | 4 +- docs/2017-11/index.html | 4 +- docs/2017-12/index.html | 4 +- docs/2018-01/index.html | 4 +- docs/2018-02/index.html | 4 +- docs/2018-03/index.html | 4 +- docs/2018-04/index.html | 4 +- docs/2018-05/index.html | 4 +- docs/2018-06/index.html | 4 +- docs/2018-07/index.html | 4 +- docs/2018-08/index.html | 4 +- docs/2018-09/index.html | 4 +- docs/2018-10/index.html | 4 +- docs/2018-11/index.html | 4 +- docs/2018-12/index.html | 4 +- docs/2019-01/index.html | 4 +- docs/2019-02/index.html | 4 +- docs/2019-03/index.html | 4 +- docs/2019-04/index.html | 4 +- docs/2019-05/index.html | 4 +- docs/2019-06/index.html | 4 +- docs/2019-07/index.html | 4 +- docs/2019-08/index.html | 4 +- docs/2019-09/index.html | 4 +- docs/2019-10/index.html | 4 +- docs/2019-11/index.html | 4 +- docs/2019-12/index.html | 4 +- docs/2020-01/index.html | 4 +- docs/2020-02/index.html | 4 +- docs/2020-03/index.html | 4 +- docs/2020-04/index.html | 4 +- docs/2020-05/index.html | 4 +- docs/2020-06/index.html | 4 +- docs/2020-07/index.html | 4 +- docs/2020-08/index.html | 4 +- docs/2020-09/index.html | 4 +- docs/2020-10/index.html | 4 +- docs/2020-11/index.html | 8 +- docs/2020-12/index.html | 212 +++++++++++++++++++++ docs/404.html | 4 +- docs/categories/index.html | 8 +- docs/categories/index.xml | 4 +- docs/categories/notes/index.html | 63 +++--- docs/categories/notes/index.xml | 20 +- docs/categories/notes/page/2/index.html | 62 +++--- docs/categories/notes/page/3/index.html | 64 +++---- docs/categories/notes/page/4/index.html | 64 ++++--- docs/categories/notes/page/5/index.html | 32 +++- docs/cgiar-library-migration/index.html | 4 +- docs/cgspace-cgcorev2-migration/index.html | 4 +- docs/cgspace-dspace6-upgrade/index.html | 6 +- docs/index.html | 65 +++---- docs/index.xml | 20 +- docs/page/2/index.html | 64 ++++--- docs/page/3/index.html | 66 +++---- docs/page/4/index.html | 66 ++++--- docs/page/5/index.html | 57 +++--- docs/page/6/index.html | 54 +++--- docs/page/7/index.html | 31 ++- docs/posts/index.html | 65 +++---- docs/posts/index.xml | 20 +- docs/posts/page/2/index.html | 64 ++++--- docs/posts/page/3/index.html | 66 +++---- docs/posts/page/4/index.html | 66 ++++--- docs/posts/page/5/index.html | 57 +++--- docs/posts/page/6/index.html | 54 +++--- docs/posts/page/7/index.html | 31 ++- docs/robots.txt | 5 +- docs/sitemap.xml | 39 ++-- docs/tags/index.html | 4 +- docs/tags/migration/index.html | 4 +- docs/tags/notes/index.html | 4 +- docs/tags/notes/page/2/index.html | 4 +- docs/tags/notes/page/3/index.html | 4 +- 99 files changed, 1054 insertions(+), 677 deletions(-) create mode 100644 content/posts/2020-12.md create mode 100644 docs/2020-12/index.html diff --git a/content/posts/2020-12.md b/content/posts/2020-12.md new file mode 100644 index 000000000..f2b135b52 --- /dev/null +++ b/content/posts/2020-12.md @@ -0,0 +1,24 @@ +--- +title: "December, 2020" +date: 2020-12-01T11:32:54+02:00 +author: "Alan Orth" +categories: ["Notes"] +--- + +## 2020-12-01 + +- Atmire responded about the issue with duplicate data in our Solr statistics + - They noticed that some records in the statistics-2015 core haven't been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven't migrated any of the records yet + - That's strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the `cua_version` field + - I started processing those (about 411,000 records): + + + +```console +$ chrt -b 0 dspace dsrun com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdateCLI -t 12 -c statistics-2015 +``` + +- AReS went down when the `renew-letsencrypt` service stopped the `angular_nginx` container in the pre-update hook and failed to bring it back up + - I ran all system updates on the host and rebooted it and AReS came back up OK + + diff --git a/content/posts/cgspace-dspace6-upgrade.md b/content/posts/cgspace-dspace6-upgrade.md index c72038d05..a31465a59 100644 --- a/content/posts/cgspace-dspace6-upgrade.md +++ b/content/posts/cgspace-dspace6-upgrade.md @@ -470,7 +470,7 @@ The statistics-2015 core, in 12-hour batches: $ chrt -b 0 dspace dsrun com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdateCLI -t 12 -c statistics-2015 ``` -It took ~17 hours to finish processing this core. +It took ~21 hours to finish processing this core. ## statistics-2014 diff --git a/docs/2015-11/index.html b/docs/2015-11/index.html index 837543929..b6ff6a44d 100644 --- a/docs/2015-11/index.html +++ b/docs/2015-11/index.html @@ -239,6 +239,8 @@ db.statementpool = true
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -247,8 +249,6 @@ db.statementpool = true
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2015-12/index.html b/docs/2015-12/index.html index 5e85ae1ce..6609abb0d 100644 --- a/docs/2015-12/index.html +++ b/docs/2015-12/index.html @@ -261,6 +261,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -269,8 +271,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-01/index.html b/docs/2016-01/index.html index 92630ce08..2b8dc5a99 100644 --- a/docs/2016-01/index.html +++ b/docs/2016-01/index.html @@ -197,6 +197,8 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -205,8 +207,6 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-02/index.html b/docs/2016-02/index.html index ea5a9f763..1f7af07ea 100644 --- a/docs/2016-02/index.html +++ b/docs/2016-02/index.html @@ -375,6 +375,8 @@ Bitstream: tést señora alimentación.pdf
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -383,8 +385,6 @@ Bitstream: tést señora alimentación.pdf
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-03/index.html b/docs/2016-03/index.html index d5c226505..4a762906d 100644 --- a/docs/2016-03/index.html +++ b/docs/2016-03/index.html @@ -313,6 +313,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -321,8 +323,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-04/index.html b/docs/2016-04/index.html index 121425e27..c4def7b4f 100644 --- a/docs/2016-04/index.html +++ b/docs/2016-04/index.html @@ -492,6 +492,8 @@ dspace.log.2016-04-27:7271
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -500,8 +502,6 @@ dspace.log.2016-04-27:7271
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-05/index.html b/docs/2016-05/index.html index 72e439d6b..20da47dc0 100644 --- a/docs/2016-05/index.html +++ b/docs/2016-05/index.html @@ -368,6 +368,8 @@ sys 0m20.540s
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -376,8 +378,6 @@ sys 0m20.540s
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-06/index.html b/docs/2016-06/index.html index 22054b67f..e3f57e945 100644 --- a/docs/2016-06/index.html +++ b/docs/2016-06/index.html @@ -406,6 +406,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -414,8 +416,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-07/index.html b/docs/2016-07/index.html index 8fae2dd74..2e497f5f9 100644 --- a/docs/2016-07/index.html +++ b/docs/2016-07/index.html @@ -322,6 +322,8 @@ discovery.index.authority.ignore-variants=true
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -330,8 +332,6 @@ discovery.index.authority.ignore-variants=true
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-08/index.html b/docs/2016-08/index.html index bf1f2e0c3..30c51f850 100644 --- a/docs/2016-08/index.html +++ b/docs/2016-08/index.html @@ -386,6 +386,8 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -394,8 +396,6 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/b
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-09/index.html b/docs/2016-09/index.html index d02188cd3..75d467dcf 100644 --- a/docs/2016-09/index.html +++ b/docs/2016-09/index.html @@ -603,6 +603,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -611,8 +613,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-10/index.html b/docs/2016-10/index.html index ab456a1c1..d28f5c81f 100644 --- a/docs/2016-10/index.html +++ b/docs/2016-10/index.html @@ -369,6 +369,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -377,8 +379,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'http:
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-11/index.html b/docs/2016-11/index.html index 76d135efa..7790cff32 100644 --- a/docs/2016-11/index.html +++ b/docs/2016-11/index.html @@ -545,6 +545,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -553,8 +555,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2016-12/index.html b/docs/2016-12/index.html index 50797c5ac..24a74de0c 100644 --- a/docs/2016-12/index.html +++ b/docs/2016-12/index.html @@ -781,6 +781,8 @@ $ exit
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -789,8 +791,6 @@ $ exit
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-01/index.html b/docs/2017-01/index.html index fed592875..ac9443a9f 100644 --- a/docs/2017-01/index.html +++ b/docs/2017-01/index.html @@ -366,6 +366,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -374,8 +376,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-02/index.html b/docs/2017-02/index.html index f8e617d26..326b0ffe7 100644 --- a/docs/2017-02/index.html +++ b/docs/2017-02/index.html @@ -421,6 +421,8 @@ COPY 1968
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -429,8 +431,6 @@ COPY 1968
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-03/index.html b/docs/2017-03/index.html index 7e453dfaf..f8822ccbc 100644 --- a/docs/2017-03/index.html +++ b/docs/2017-03/index.html @@ -352,6 +352,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -360,8 +362,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-04/index.html b/docs/2017-04/index.html index 5d308bccd..35b618fa6 100644 --- a/docs/2017-04/index.html +++ b/docs/2017-04/index.html @@ -582,6 +582,8 @@ $ gem install compass -v 1.0.3
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -590,8 +592,6 @@ $ gem install compass -v 1.0.3
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-05/index.html b/docs/2017-05/index.html index 4d4b33a09..aa24ab1f1 100644 --- a/docs/2017-05/index.html +++ b/docs/2017-05/index.html @@ -388,6 +388,8 @@ UPDATE 187
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -396,8 +398,6 @@ UPDATE 187
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-06/index.html b/docs/2017-06/index.html index f509e4864..a4f1446fc 100644 --- a/docs/2017-06/index.html +++ b/docs/2017-06/index.html @@ -267,6 +267,8 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -275,8 +277,6 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace impo
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-07/index.html b/docs/2017-07/index.html index 16190c761..163b8d755 100644 --- a/docs/2017-07/index.html +++ b/docs/2017-07/index.html @@ -272,6 +272,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -280,8 +282,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-08/index.html b/docs/2017-08/index.html index 6ee89ad2b..77088f0b5 100644 --- a/docs/2017-08/index.html +++ b/docs/2017-08/index.html @@ -514,6 +514,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -522,8 +524,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-09/index.html b/docs/2017-09/index.html index e7f7f9047..c2d11f657 100644 --- a/docs/2017-09/index.html +++ b/docs/2017-09/index.html @@ -656,6 +656,8 @@ Cert Status: good
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -664,8 +666,6 @@ Cert Status: good
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-10/index.html b/docs/2017-10/index.html index e03e370a2..159eef80e 100644 --- a/docs/2017-10/index.html +++ b/docs/2017-10/index.html @@ -440,6 +440,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -448,8 +450,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-11/index.html b/docs/2017-11/index.html index 481f96ddd..de4437eef 100644 --- a/docs/2017-11/index.html +++ b/docs/2017-11/index.html @@ -941,6 +941,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -949,8 +951,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort -n | u
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2017-12/index.html b/docs/2017-12/index.html index 46e487855..c0e9c17a3 100644 --- a/docs/2017-12/index.html +++ b/docs/2017-12/index.html @@ -780,6 +780,8 @@ DELETE 20
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -788,8 +790,6 @@ DELETE 20
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-01/index.html b/docs/2018-01/index.html index 629bf65d4..ddc0f4bba 100644 --- a/docs/2018-01/index.html +++ b/docs/2018-01/index.html @@ -1449,6 +1449,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -1457,8 +1459,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-02/index.html b/docs/2018-02/index.html index 484215dc5..cfd333521 100644 --- a/docs/2018-02/index.html +++ b/docs/2018-02/index.html @@ -1036,6 +1036,8 @@ UPDATE 3
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -1044,8 +1046,6 @@ UPDATE 3
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-03/index.html b/docs/2018-03/index.html index 5d184bf78..b5464003d 100644 --- a/docs/2018-03/index.html +++ b/docs/2018-03/index.html @@ -582,6 +582,8 @@ Fixed 5 occurences of: GENEBANKS
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -590,8 +592,6 @@ Fixed 5 occurences of: GENEBANKS
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-04/index.html b/docs/2018-04/index.html index 0d6ef501c..d3146f444 100644 --- a/docs/2018-04/index.html +++ b/docs/2018-04/index.html @@ -591,6 +591,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -599,8 +601,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-05/index.html b/docs/2018-05/index.html index 0b8a8f0cf..0013ad99e 100644 --- a/docs/2018-05/index.html +++ b/docs/2018-05/index.html @@ -520,6 +520,8 @@ $ psql -h localhost -U postgres dspacetest
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -528,8 +530,6 @@ $ psql -h localhost -U postgres dspacetest
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-06/index.html b/docs/2018-06/index.html index 1f65076fe..d7c30457c 100644 --- a/docs/2018-06/index.html +++ b/docs/2018-06/index.html @@ -514,6 +514,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -522,8 +524,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-07/index.html b/docs/2018-07/index.html index 970673a7d..7c1c7cf48 100644 --- a/docs/2018-07/index.html +++ b/docs/2018-07/index.html @@ -566,6 +566,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -574,8 +576,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-08/index.html b/docs/2018-08/index.html index 4d78268ab..6b0ff068e 100644 --- a/docs/2018-08/index.html +++ b/docs/2018-08/index.html @@ -439,6 +439,8 @@ $ dspace database migrate ignored
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -447,8 +449,6 @@ $ dspace database migrate ignored
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-09/index.html b/docs/2018-09/index.html index 2ea8f9cca..214168c9f 100644 --- a/docs/2018-09/index.html +++ b/docs/2018-09/index.html @@ -745,6 +745,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -753,8 +755,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND metadata_f
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-10/index.html b/docs/2018-10/index.html index b5bea1842..df56c2f10 100644 --- a/docs/2018-10/index.html +++ b/docs/2018-10/index.html @@ -653,6 +653,8 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -661,8 +663,6 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: app
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-11/index.html b/docs/2018-11/index.html index 71b144476..745c5bff1 100644 --- a/docs/2018-11/index.html +++ b/docs/2018-11/index.html @@ -550,6 +550,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -558,8 +560,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2018-12/index.html b/docs/2018-12/index.html index a62b24509..fbd169e7c 100644 --- a/docs/2018-12/index.html +++ b/docs/2018-12/index.html @@ -591,6 +591,8 @@ UPDATE 1
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -599,8 +601,6 @@ UPDATE 1
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-01/index.html b/docs/2019-01/index.html index cd83e2581..3ffab7b6d 100644 --- a/docs/2019-01/index.html +++ b/docs/2019-01/index.html @@ -1261,6 +1261,8 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -1269,8 +1271,6 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInternal/
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-02/index.html b/docs/2019-02/index.html index 08c523ca1..9d9d82f59 100644 --- a/docs/2019-02/index.html +++ b/docs/2019-02/index.html @@ -1341,6 +1341,8 @@ Please see the DSpace documentation for assistance.
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -1349,8 +1351,6 @@ Please see the DSpace documentation for assistance.
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-03/index.html b/docs/2019-03/index.html index b5559a3eb..ccd53d4a7 100644 --- a/docs/2019-03/index.html +++ b/docs/2019-03/index.html @@ -1205,6 +1205,8 @@ sys 0m2.551s
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -1213,8 +1215,6 @@ sys 0m2.551s
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-04/index.html b/docs/2019-04/index.html index d374485a8..940990187 100644 --- a/docs/2019-04/index.html +++ b/docs/2019-04/index.html @@ -1296,6 +1296,8 @@ UPDATE 14
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -1304,8 +1306,6 @@ UPDATE 14
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-05/index.html b/docs/2019-05/index.html index b3419222d..c17818dab 100644 --- a/docs/2019-05/index.html +++ b/docs/2019-05/index.html @@ -628,6 +628,8 @@ COPY 64871
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -636,8 +638,6 @@ COPY 64871
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-06/index.html b/docs/2019-06/index.html index db51accb1..f6f408b94 100644 --- a/docs/2019-06/index.html +++ b/docs/2019-06/index.html @@ -314,6 +314,8 @@ UPDATE 2
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -322,8 +324,6 @@ UPDATE 2
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-07/index.html b/docs/2019-07/index.html index 729f78758..489877f4d 100644 --- a/docs/2019-07/index.html +++ b/docs/2019-07/index.html @@ -551,6 +551,8 @@ issn.validate('1020-3362')
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -559,8 +561,6 @@ issn.validate('1020-3362')
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-08/index.html b/docs/2019-08/index.html index 95f299c7f..ce9b049a5 100644 --- a/docs/2019-08/index.html +++ b/docs/2019-08/index.html @@ -570,6 +570,8 @@ sys 2m27.496s
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -578,8 +580,6 @@ sys 2m27.496s
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-09/index.html b/docs/2019-09/index.html index 9da373b4d..8192f5bfd 100644 --- a/docs/2019-09/index.html +++ b/docs/2019-09/index.html @@ -578,6 +578,8 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -586,8 +588,6 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-10/index.html b/docs/2019-10/index.html index e789845ae..81cfa954c 100644 --- a/docs/2019-10/index.html +++ b/docs/2019-10/index.html @@ -382,6 +382,8 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -390,8 +392,6 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-11/index.html b/docs/2019-11/index.html index ca996db2b..b6e0aa003 100644 --- a/docs/2019-11/index.html +++ b/docs/2019-11/index.html @@ -689,6 +689,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -697,8 +699,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2019-12/index.html b/docs/2019-12/index.html index 64514df7f..ed0ddf814 100644 --- a/docs/2019-12/index.html +++ b/docs/2019-12/index.html @@ -401,6 +401,8 @@ UPDATE 1
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -409,8 +411,6 @@ UPDATE 1
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-01/index.html b/docs/2020-01/index.html index 88e9cc74b..ad8dd6256 100644 --- a/docs/2020-01/index.html +++ b/docs/2020-01/index.html @@ -601,6 +601,8 @@ COPY 2900
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -609,8 +611,6 @@ COPY 2900
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-02/index.html b/docs/2020-02/index.html index 5c0e5b45e..76e40bd9c 100644 --- a/docs/2020-02/index.html +++ b/docs/2020-02/index.html @@ -1272,6 +1272,8 @@ Moving: 21993 into core statistics-2019
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -1280,8 +1282,6 @@ Moving: 21993 into core statistics-2019
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-03/index.html b/docs/2020-03/index.html index e73cb87b7..a59d047ba 100644 --- a/docs/2020-03/index.html +++ b/docs/2020-03/index.html @@ -481,6 +481,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -489,8 +491,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-04/index.html b/docs/2020-04/index.html index 540820e53..372ce8b8a 100644 --- a/docs/2020-04/index.html +++ b/docs/2020-04/index.html @@ -655,6 +655,8 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -663,8 +665,6 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-05/index.html b/docs/2020-05/index.html index 7e8b0d287..580983bb5 100644 --- a/docs/2020-05/index.html +++ b/docs/2020-05/index.html @@ -474,6 +474,8 @@ Caused by: java.lang.NullPointerException
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -482,8 +484,6 @@ Caused by: java.lang.NullPointerException
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-06/index.html b/docs/2020-06/index.html index c2554b151..847122f60 100644 --- a/docs/2020-06/index.html +++ b/docs/2020-06/index.html @@ -808,6 +808,8 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -816,8 +818,6 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]' /tmp
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-07/index.html b/docs/2020-07/index.html index 51949d6c8..754ae4e4d 100644 --- a/docs/2020-07/index.html +++ b/docs/2020-07/index.html @@ -1139,6 +1139,8 @@ Fixed 4 occurences of: Muloi, D.M.
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -1147,8 +1149,6 @@ Fixed 4 occurences of: Muloi, D.M.
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-08/index.html b/docs/2020-08/index.html index 0d345f432..bb4962c8f 100644 --- a/docs/2020-08/index.html +++ b/docs/2020-08/index.html @@ -795,6 +795,8 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -803,8 +805,6 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-09/index.html b/docs/2020-09/index.html index 57f8cd7e5..c9c63e98d 100644 --- a/docs/2020-09/index.html +++ b/docs/2020-09/index.html @@ -714,6 +714,8 @@ solr_query_params = {
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -722,8 +724,6 @@ solr_query_params = {
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-10/index.html b/docs/2020-10/index.html index 5dc34a2ac..79667aead 100644 --- a/docs/2020-10/index.html +++ b/docs/2020-10/index.html @@ -1238,6 +1238,8 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -1246,8 +1248,6 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-11/index.html b/docs/2020-11/index.html index a014d84d2..8293c98a4 100644 --- a/docs/2020-11/index.html +++ b/docs/2020-11/index.html @@ -17,7 +17,7 @@ So far we’ve spent at least fifty hours to process the statistics and stat - + @@ -41,7 +41,7 @@ So far we’ve spent at least fifty hours to process the statistics and stat "url": "https://alanorth.github.io/cgspace-notes/2020-11/", "wordCount": "3655", "datePublished": "2020-11-01T13:11:54+02:00", - "dateModified": "2020-11-29T14:50:02+02:00", + "dateModified": "2020-11-30T20:12:55+02:00", "author": { "@type": "Person", "name": "Alan Orth" @@ -728,6 +728,8 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -736,8 +738,6 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/2020-12/index.html b/docs/2020-12/index.html new file mode 100644 index 000000000..44efb97ad --- /dev/null +++ b/docs/2020-12/index.html @@ -0,0 +1,212 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + December, 2020 | CGSpace Notes + + + + + + + + + + + + + + + + + + + + + +
+
+ +
+
+ + + + +
+
+

CGSpace Notes

+

Documenting day-to-day work on the CGSpace repository.

+
+
+ + + + +
+
+
+ + + + +
+
+

December, 2020

+

+ + in + Notes + + +

+
+

2020-12-01

+
    +
  • Atmire responded about the issue with duplicate data in our Solr statistics +
      +
    • They noticed that some records in the statistics-2015 core haven’t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven’t migrated any of the records yet
      • +
    • That’s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the cua_version field
      • +
    • I started processing those (about 411,000 records):
      • +
    +
    • +
+
$ chrt -b 0 dspace dsrun com.atmire.statistics.util.update.atomic.AtomicStatisticsUpdateCLI -t 12 -c statistics-2015
+
    +
  • AReS went down when the renew-letsencrypt service stopped the angular_nginx container in the pre-update hook and failed to bring it back up +
      +
    • I ran all system updates on the host and rebooted it and AReS came back up OK
      • +
    +
    • +
+ + + + + + +
+ + + +
+ + + + +
+
+ + + + + + + + + diff --git a/docs/404.html b/docs/404.html index 7e0cf73fd..4945eeb62 100644 --- a/docs/404.html +++ b/docs/404.html @@ -92,6 +92,8 @@
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -100,8 +102,6 @@
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/categories/index.html b/docs/categories/index.html index 156abe31a..740af8e2d 100644 --- a/docs/categories/index.html +++ b/docs/categories/index.html @@ -9,7 +9,7 @@ - + @@ -81,7 +81,7 @@

Notes

-

by Alan Orth

+

by Alan Orth

Read more → @@ -105,6 +105,8 @@
    +
  1. December, 2020
    2. +
  2. CGSpace DSpace 6 Upgrade
  3. November, 2020
    4. @@ -113,8 +115,6 @@
  4. September, 2020
    5. -
  5. August, 2020
    6. -
diff --git a/docs/categories/index.xml b/docs/categories/index.xml index c0c5cd490..21c7a7bd6 100644 --- a/docs/categories/index.xml +++ b/docs/categories/index.xml @@ -6,11 +6,11 @@ Recent content in Categories on CGSpace Notes Hugo -- gohugo.io en-us - Sun, 15 Nov 2020 13:27:35 +0200 + Tue, 01 Dec 2020 11:32:54 +0200 Notes https://alanorth.github.io/cgspace-notes/categories/notes/ - Sun, 15 Nov 2020 13:27:35 +0200 + Tue, 01 Dec 2020 11:32:54 +0200 https://alanorth.github.io/cgspace-notes/categories/notes/ diff --git a/docs/categories/notes/index.html b/docs/categories/notes/index.html index d1779f80e..b8f2d3c42 100644 --- a/docs/categories/notes/index.html +++ b/docs/categories/notes/index.html @@ -9,7 +9,7 @@ - + @@ -78,6 +78,33 @@ +
+
+

December, 2020

+

by Alan Orth in + Notes + + +

+
+

2020-12-01

+
    +
  • Atmire responded about the issue with duplicate data in our Solr statistics +
      +
    • They noticed that some records in the statistics-2015 core haven’t been migrated with the AtomicStatisticsUpdateCLI tool yet and assumed that I haven’t migrated any of the records yet
      • +
    • That’s strange, as I checked all ten cores and 2015 is the only one with some unmigrated documents, as according to the cua_version field
      • +
    • I started processing those (about 411,000 records):
      • +
    +
    • +
+ Read more → +
+ + + + + +

CGSpace DSpace 6 Upgrade

@@ -327,36 +354,6 @@ - - - - - - -