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Alan Orth 2020-09-16 13:47:13 +03:00
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2
docs/2015-11/index.html
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@ -31,7 +31,7 @@ Last week I had increased the limit from 30 to 60, which seemed to help, but now
$ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace
78 78
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docs/2015-12/index.html
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@ -33,7 +33,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less
-rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo -rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo
-rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz -rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz
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docs/2016-01/index.html
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@ -25,7 +25,7 @@ Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_
I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated. I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated.
Update GitHub wiki for documentation of maintenance tasks. Update GitHub wiki for documentation of maintenance tasks.
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@ -132,7 +132,7 @@ Update GitHub wiki for documentation of maintenance tasks.
<li>Tweak date-based facets to show more values in drill-down ranges (<a href="https://github.com/ilri/DSpace/issues/162">#162</a>)</li> <li>Tweak date-based facets to show more values in drill-down ranges (<a href="https://github.com/ilri/DSpace/issues/162">#162</a>)</li>
<li>Need to remember to clear the Cocoon cache after deployment or else you don&rsquo;t see the new ranges immediately</li> <li>Need to remember to clear the Cocoon cache after deployment or else you don&rsquo;t see the new ranges immediately</li>
<li>Set up recipe on IFTTT to tweet new items from the CGSpace Atom feed to my twitter account</li> <li>Set up recipe on IFTTT to tweet new items from the CGSpace Atom feed to my twitter account</li>
<li>Altmetrics&rsquo; support for Handles is kinda weak, so they can&rsquo;t associate our items with DOIs until they are tweeted or blogged, etc first.</li> <li>Altmetrics' support for Handles is kinda weak, so they can&rsquo;t associate our items with DOIs until they are tweeted or blogged, etc first.</li>
</ul> </ul>
<h2 id="2016-01-21">2016-01-21</h2> <h2 id="2016-01-21">2016-01-21</h2>
<ul> <ul>

4
docs/2016-02/index.html
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@ -35,7 +35,7 @@ I noticed we have a very interesting list of countries on CGSpace:
Not only are there 49,000 countries, we have some blanks (25)&hellip; Not only are there 49,000 countries, we have some blanks (25)&hellip;
Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo; Also, lots of things like &ldquo;COTE D`LVOIRE&rdquo; and &ldquo;COTE D IVOIRE&rdquo;
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@ -299,7 +299,7 @@ CIAT_COLOMBIA_000169_Técnicas_para_el_aislamiento_y_cultivo_de_protoplastos_de_
<li>Then you create a facet for blank values on each column, show the rows that have values for one and not the other, then transform each independently to have the contents of the other, with &ldquo;||&rdquo; in between</li> <li>Then you create a facet for blank values on each column, show the rows that have values for one and not the other, then transform each independently to have the contents of the other, with &ldquo;||&rdquo; in between</li>
<li>Work on Python script for parsing and downloading PDF records from <code>dc.identifier.url</code></li> <li>Work on Python script for parsing and downloading PDF records from <code>dc.identifier.url</code></li>
<li>To get filenames from <code>dc.identifier.url</code>, create a new column based on this transform: <code>forEach(value.split('||'), v, v.split('/')[-1]).join('||')</code></li> <li>To get filenames from <code>dc.identifier.url</code>, create a new column based on this transform: <code>forEach(value.split('||'), v, v.split('/')[-1]).join('||')</code></li>
<li>This also works for records that have multiple URLs (separated by &ldquo;||&rdquo;)</li> <li>This also works for records that have multiple URLs (separated by &ldquo;||&quot;)</li>
</ul> </ul>
<h2 id="2016-02-17">2016-02-17</h2> <h2 id="2016-02-17">2016-02-17</h2>
<ul> <ul>

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docs/2016-03/index.html
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@ -25,7 +25,7 @@ Looking at issues with author authorities on CGSpace
For some reason we still have the index-lucene-update cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module For some reason we still have the index-lucene-update cron job active on CGSpace, but I&rsquo;m pretty sure we don&rsquo;t need it as of the latest few versions of Atmire&rsquo;s Listings and Reports module
Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server
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docs/2016-04/index.html
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@ -29,7 +29,7 @@ After running DSpace for over five years I&rsquo;ve never needed to look in any
This will save us a few gigs of backup space we&rsquo;re paying for on S3 This will save us a few gigs of backup space we&rsquo;re paying for on S3
Also, I noticed the checker log has some errors we should pay attention to: Also, I noticed the checker log has some errors we should pay attention to:
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@ -147,7 +147,7 @@ java.io.FileNotFoundException: /home/cgspace.cgiar.org/assetstore/64/29/06/64290
****************************************************** ******************************************************
</code></pre><ul> </code></pre><ul>
<li>So this would be the <code>tomcat7</code> Unix user, who seems to have a default limit of 1024 files in its shell</li> <li>So this would be the <code>tomcat7</code> Unix user, who seems to have a default limit of 1024 files in its shell</li>
<li>For what it&rsquo;s worth, we have been setting the actual Tomcat 7 process&rsquo; limit to 16384 for a few years (in <code>/etc/default/tomcat7</code>)</li> <li>For what it&rsquo;s worth, we have been setting the actual Tomcat 7 process' limit to 16384 for a few years (in <code>/etc/default/tomcat7</code>)</li>
<li>Looks like cron will read limits from <code>/etc/security/limits.*</code> so we can do something for the tomcat7 user there</li> <li>Looks like cron will read limits from <code>/etc/security/limits.*</code> so we can do something for the tomcat7 user there</li>
<li>Submit pull request for Tomcat 7 limits in Ansible dspace role (<a href="https://github.com/ilri/rmg-ansible-public/pull/30">#30</a>)</li> <li>Submit pull request for Tomcat 7 limits in Ansible dspace role (<a href="https://github.com/ilri/rmg-ansible-public/pull/30">#30</a>)</li>
</ul> </ul>

2
docs/2016-05/index.html
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@ -31,7 +31,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period!
# awk &#39;{print $1}&#39; /var/log/nginx/rest.log | uniq | wc -l # awk &#39;{print $1}&#39; /var/log/nginx/rest.log | uniq | wc -l
3168 3168
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2
docs/2016-06/index.html
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@ -31,7 +31,7 @@ This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRec
You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets
Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship
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docs/2016-07/index.html
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@ -41,7 +41,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and
In this case the select query was showing 95 results before the update In this case the select query was showing 95 results before the update
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2
docs/2016-08/index.html
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@ -39,7 +39,7 @@ $ git checkout -b 55new 5_x-prod
$ git reset --hard ilri/5_x-prod $ git reset --hard ilri/5_x-prod
$ git rebase -i dspace-5.5 $ git rebase -i dspace-5.5
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2
docs/2016-09/index.html
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@ -31,7 +31,7 @@ It looks like we might be able to use OUs now, instead of DCs:
$ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot; $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b &quot;dc=cgiarad,dc=org&quot; -D &quot;admigration1@cgiarad.org&quot; -W &quot;(sAMAccountName=admigration1)&quot;
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2
docs/2016-10/index.html
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@ -39,7 +39,7 @@ I exported a random item&rsquo;s metadata as CSV, deleted all columns except id
0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X 0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X
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docs/2016-11/index.html
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@ -23,7 +23,7 @@ Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module
Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module (#286) Add dc.type to the output options for Atmire&rsquo;s Listings and Reports module (#286)
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docs/2016-12/index.html
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@ -43,7 +43,7 @@ I see thousands of them in the logs for the last few months, so it&rsquo;s not r
I&rsquo;ve raised a ticket with Atmire to ask I&rsquo;ve raised a ticket with Atmire to ask
Another worrying error from dspace.log is: Another worrying error from dspace.log is:
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docs/2017-01/index.html
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@ -25,7 +25,7 @@ I checked to see if the Solr sharding task that is supposed to run on January 1s
I tested on DSpace Test as well and it doesn&rsquo;t work there either I tested on DSpace Test as well and it doesn&rsquo;t work there either
I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years I asked on the dspace-tech mailing list because it seems to be broken, and actually now I&rsquo;m not sure if we&rsquo;ve ever had the sharding task run successfully over all these years
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docs/2017-02/index.html
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@ -47,7 +47,7 @@ DELETE 1
Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301) Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
Looks like we&rsquo;ll be using cg.identifier.ccafsprojectpii as the field name Looks like we&rsquo;ll be using cg.identifier.ccafsprojectpii as the field name
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docs/2017-03/index.html
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@ -51,7 +51,7 @@ Interestingly, it seems DSpace 4.x&rsquo;s thumbnails were sRGB, but forcing reg
$ identify ~/Desktop/alc_contrastes_desafios.jpg $ identify ~/Desktop/alc_contrastes_desafios.jpg
/Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600&#43;0&#43;0 8-bit CMYK 168KB 0.000u 0:00.000 /Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600&#43;0&#43;0 8-bit CMYK 168KB 0.000u 0:00.000
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docs/2017-04/index.html
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@ -37,7 +37,7 @@ Testing the CMYK patch on a collection with 650 items:
$ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Thumbnail&quot; -v &gt;&amp; /tmp/filter-media-cmyk.txt $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p &quot;ImageMagick PDF Thumbnail&quot; -v &gt;&amp; /tmp/filter-media-cmyk.txt
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docs/2017-05/index.html
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@ -15,7 +15,7 @@
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="May, 2017"/> <meta name="twitter:title" content="May, 2017"/>
<meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/> <meta name="twitter:description" content="2017-05-01 ICARDA apparently started working on CG Core on their MEL repository They have done a few cg.* fields, but not very consistent and even copy some of CGSpace items: https://mel.cgiar.org/xmlui/handle/20.500.11766/6911?show=full https://cgspace.cgiar.org/handle/10568/73683 2017-05-02 Atmire got back about the Workflow Statistics issue, and apparently it&rsquo;s a bug in the CUA module so they will send us a pull request 2017-05-04 Sync DSpace Test with database and assetstore from CGSpace Re-deploy DSpace Test with Atmire&rsquo;s CUA patch for workflow statistics, run system updates, and restart the server Now I can see the workflow statistics and am able to select users, but everything returns 0 items Megan says there are still some mapped items are not appearing since last week, so I forced a full index-discovery -b Need to remember to check if the collection has more items (currently 39 on CGSpace, but 118 on the freshly reindexed DSPace Test) tomorrow: https://cgspace."/>
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docs/2017-06/index.html
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@ -15,7 +15,7 @@
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="June, 2017"/> <meta name="twitter:title" content="June, 2017"/>
<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/> <meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we&rsquo;ll create a new sub-community for Phase II and create collections for the research themes there The current &ldquo;Research Themes&rdquo; community will be renamed to &ldquo;WLE Phase I Research Themes&rdquo; Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
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docs/2017-07/index.html
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@ -33,7 +33,7 @@ Merge changes for WLE Phase II theme rename (#329)
Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace Looking at extracting the metadata registries from ICARDA&rsquo;s MEL DSpace database so we can compare fields with CGSpace
We can use PostgreSQL&rsquo;s extended output format (-x) plus sed to format the output into quasi XML: We can use PostgreSQL&rsquo;s extended output format (-x) plus sed to format the output into quasi XML:
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docs/2017-08/index.html
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@ -57,7 +57,7 @@ This was due to newline characters in the dc.description.abstract column, which
I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d
Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet
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docs/2017-09/index.html
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@ -29,7 +29,7 @@ Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two
Ask Sisay to clean up the WLE approvers a bit, as Marianne&rsquo;s user account is both in the approvers step as well as the group Ask Sisay to clean up the WLE approvers a bit, as Marianne&rsquo;s user account is both in the approvers step as well as the group
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docs/2017-10/index.html
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@ -31,7 +31,7 @@ http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine
Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections
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docs/2017-11/index.html
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@ -45,7 +45,7 @@ Generate list of authors on CGSpace for Peter to go through and correct:
dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = &#39;contributor&#39; and qualifier = &#39;author&#39;) AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv; dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = &#39;contributor&#39; and qualifier = &#39;author&#39;) AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv;
COPY 54701 COPY 54701
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docs/2017-12/index.html
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@ -27,7 +27,7 @@ The logs say &ldquo;Timeout waiting for idle object&rdquo;
PostgreSQL activity says there are 115 connections currently PostgreSQL activity says there are 115 connections currently
The list of connections to XMLUI and REST API for today: The list of connections to XMLUI and REST API for today:
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docs/2018-01/index.html
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@ -147,7 +147,7 @@ dspace.log.2018-01-02:34
Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let&rsquo;s Encrypt if it&rsquo;s just a handful of domains Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let&rsquo;s Encrypt if it&rsquo;s just a handful of domains
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@ -842,7 +842,7 @@ sys 0m2.210s
<li>Discuss standardized names for CRPs and centers with ICARDA (don&rsquo;t wait for CG Core)</li> <li>Discuss standardized names for CRPs and centers with ICARDA (don&rsquo;t wait for CG Core)</li>
<li>Re-send DC rights implementation and forward to everyone so we can move forward with it (without the URI field for now)</li> <li>Re-send DC rights implementation and forward to everyone so we can move forward with it (without the URI field for now)</li>
<li>Start looking at where I was with the AGROVOC API</li> <li>Start looking at where I was with the AGROVOC API</li>
<li>Have a controlled vocabulary for CGIAR authors&rsquo; names and ORCIDs? Perhaps values like: Orth, Alan S. (0000-0002-1735-7458)</li> <li>Have a controlled vocabulary for CGIAR authors' names and ORCIDs? Perhaps values like: Orth, Alan S. (0000-0002-1735-7458)</li>
<li>Need to find the metadata field name that ICARDA is using for their ORCIDs</li> <li>Need to find the metadata field name that ICARDA is using for their ORCIDs</li>
<li>Update text for DSpace version plan on wiki</li> <li>Update text for DSpace version plan on wiki</li>
<li>Come up with an SLA, something like: <em>In return for your contribution we will, to the best of our ability, ensure 99.5% (&ldquo;two and a half nines&rdquo;) uptime of CGSpace, ensure data is stored in open formats and safely backed up, follow CG Core metadata standards, &hellip;</em></li> <li>Come up with an SLA, something like: <em>In return for your contribution we will, to the best of our ability, ensure 99.5% (&ldquo;two and a half nines&rdquo;) uptime of CGSpace, ensure data is stored in open formats and safely backed up, follow CG Core metadata standards, &hellip;</em></li>

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docs/2018-02/index.html
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@ -27,7 +27,7 @@ We don&rsquo;t need to distinguish between internal and external works, so that
Yesterday I figured out how to monitor DSpace sessions using JMX Yesterday I figured out how to monitor DSpace sessions using JMX
I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu&rsquo;s munin-plugins-java package and used the stuff I discovered about JMX in 2018-01 I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu&rsquo;s munin-plugins-java package and used the stuff I discovered about JMX in 2018-01
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@ -538,7 +538,7 @@ $ grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' CGcenter_ORCID_ID_c
1204 1204
</code></pre><ul> </code></pre><ul>
<li>Also, save that regex for the future because it will be very useful!</li> <li>Also, save that regex for the future because it will be very useful!</li>
<li>CIAT sent a list of their authors&rsquo; ORCIDs and combined with ours there are now 1227:</li> <li>CIAT sent a list of their authors' ORCIDs and combined with ours there are now 1227:</li>
</ul> </ul>
<pre><code>$ cat CGcenter_ORCID_ID_combined.csv ciat-orcids.txt | grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort | uniq | wc -l <pre><code>$ cat CGcenter_ORCID_ID_combined.csv ciat-orcids.txt | grep -oE '[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}-[A-Z0-9]{4}' | sort | uniq | wc -l
1227 1227
@ -919,7 +919,7 @@ COPY 263
<li>Tom Desair from Atmire shared some extra JDBC pool parameters that might be useful on my thread on the dspace-tech mailing list: <li>Tom Desair from Atmire shared some extra JDBC pool parameters that might be useful on my thread on the dspace-tech mailing list:
<ul> <ul>
<li>abandonWhenPercentageFull: Only start cleaning up abandoned connections if the pool is used for more than X %.</li> <li>abandonWhenPercentageFull: Only start cleaning up abandoned connections if the pool is used for more than X %.</li>
<li>jdbcInterceptors='ResetAbandonedTimer&rsquo;: Make sure the &ldquo;abondoned&rdquo; timer is reset every time there is activity on a connection</li> <li>jdbcInterceptors=&lsquo;ResetAbandonedTimer&rsquo;: Make sure the &ldquo;abondoned&rdquo; timer is reset every time there is activity on a connection</li>
</ul> </ul>
</li> </li>
<li>I will try with <code>abandonWhenPercentageFull='50'</code></li> <li>I will try with <code>abandonWhenPercentageFull='50'</code></li>

2
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@ -21,7 +21,7 @@ Export a CSV of the IITA community metadata for Martin Mueller
Export a CSV of the IITA community metadata for Martin Mueller Export a CSV of the IITA community metadata for Martin Mueller
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2
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@ -23,7 +23,7 @@ Catalina logs at least show some memory errors yesterday:
I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when I tried to test something on DSpace Test but noticed that it&rsquo;s down since god knows when
Catalina logs at least show some memory errors yesterday: Catalina logs at least show some memory errors yesterday:
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4
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@ -35,7 +35,7 @@ http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E
Then I reduced the JVM heap size from 6144 back to 5120m Then I reduced the JVM heap size from 6144 back to 5120m
Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the Ansible infrastructure scripts to support hosts choosing which distribution they want to use Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the Ansible infrastructure scripts to support hosts choosing which distribution they want to use
"/> "/>
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@ -367,7 +367,7 @@ $ ./bin/post -c countries ~/src/git/DSpace/2018-05-10-countries.csv
<ul> <ul>
<li>Discuss GDPR with James Stapleton <li>Discuss GDPR with James Stapleton
<ul> <ul>
<li>As far as I see it, we are &ldquo;Data Controllers&rdquo; on CGSpace because we store peoples&rsquo; names, emails, and phone numbers if they register</li> <li>As far as I see it, we are &ldquo;Data Controllers&rdquo; on CGSpace because we store peoples' names, emails, and phone numbers if they register</li>
<li>We set cookies on the user&rsquo;s computer, but these do not contain personally identifiable information (PII) and they are &ldquo;session&rdquo; cookies which are deleted when the user closes their browser</li> <li>We set cookies on the user&rsquo;s computer, but these do not contain personally identifiable information (PII) and they are &ldquo;session&rdquo; cookies which are deleted when the user closes their browser</li>
<li>We use Google Analytics to track website usage, which makes Google the &ldquo;Data Processor&rdquo; and in this case we merely need to <em>limit</em> or <em>obfuscate</em> the information we send to them</li> <li>We use Google Analytics to track website usage, which makes Google the &ldquo;Data Processor&rdquo; and in this case we merely need to <em>limit</em> or <em>obfuscate</em> the information we send to them</li>
<li>As the only personally identifiable information we send is the user&rsquo;s IP address, I think we only need to enable <a href="https://support.google.com/analytics/answer/2763052">IP Address Anonymization</a> in our <code>analytics.js</code> code snippets</li> <li>As the only personally identifiable information we send is the user&rsquo;s IP address, I think we only need to enable <a href="https://support.google.com/analytics/answer/2763052">IP Address Anonymization</a> in our <code>analytics.js</code> code snippets</li>

6
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@ -55,7 +55,7 @@ real 74m42.646s
user 8m5.056s user 8m5.056s
sys 2m7.289s sys 2m7.289s
"/> "/>
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@ -178,7 +178,7 @@ sys 2m7.289s
<li>Institut National des Recherches Agricoles du B nin</li> <li>Institut National des Recherches Agricoles du B nin</li>
<li>Centre de Coop ration Internationale en Recherche Agronomique pour le D veloppement</li> <li>Centre de Coop ration Internationale en Recherche Agronomique pour le D veloppement</li>
<li>Institut des Recherches Agricoles du B nin</li> <li>Institut des Recherches Agricoles du B nin</li>
<li>Institut des Savannes, C te d&rsquo; Ivoire</li> <li>Institut des Savannes, C te d' Ivoire</li>
<li>Institut f r Pflanzenpathologie und Pflanzenschutz der Universit t, Germany</li> <li>Institut f r Pflanzenpathologie und Pflanzenschutz der Universit t, Germany</li>
<li>Projet de Gestion des Ressources Naturelles, B nin</li> <li>Projet de Gestion des Ressources Naturelles, B nin</li>
<li>Universit t Hannover</li> <li>Universit t Hannover</li>
@ -424,7 +424,7 @@ delete from schema_version where version = '5.5.2015.12.03.3';
... ...
Done. Done.
</code></pre><ul> </code></pre><ul>
<li>Elizabeth from CIAT contacted me to ask if I could add ORCID identifiers to all of Andy Jarvis&rsquo; items on CGSpace</li> <li>Elizabeth from CIAT contacted me to ask if I could add ORCID identifiers to all of Andy Jarvis' items on CGSpace</li>
<li>I used my <a href="https://gist.githubusercontent.com/alanorth/a49d85cd9c5dea89cddbe809813a7050/raw/f67b6e45a9a940732882ae4bb26897a9b245ef31/add-orcid-identifiers-csv.py">add-orcid-identifiers-csv.py</a> script:</li> <li>I used my <a href="https://gist.githubusercontent.com/alanorth/a49d85cd9c5dea89cddbe809813a7050/raw/f67b6e45a9a940732882ae4bb26897a9b245ef31/add-orcid-identifiers-csv.py">add-orcid-identifiers-csv.py</a> script:</li>
</ul> </ul>
<pre><code>$ ./add-orcid-identifiers-csv.py -i 2018-06-24-andy-jarvis-orcid.csv -db dspacetest -u dspacetest -p 'fuuu' <pre><code>$ ./add-orcid-identifiers-csv.py -i 2018-06-24-andy-jarvis-orcid.csv -db dspacetest -u dspacetest -p 'fuuu'

2
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@ -33,7 +33,7 @@ During the mvn package stage on the 5.8 branch I kept getting issues with java r
There is insufficient memory for the Java Runtime Environment to continue. There is insufficient memory for the Java Runtime Environment to continue.
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2
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@ -43,7 +43,7 @@ Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did
The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes The server only has 8GB of RAM so we&rsquo;ll eventually need to upgrade to a larger one because we&rsquo;ll start starving the OS, PostgreSQL, and command line batch processes
I ran all system updates on DSpace Test and rebooted it I ran all system updates on DSpace Test and rebooted it
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2
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@ -27,7 +27,7 @@ I&rsquo;ll update the DSpace role in our Ansible infrastructure playbooks and ru
Also, I&rsquo;ll re-run the postgresql tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month Also, I&rsquo;ll re-run the postgresql tasks because the custom PostgreSQL variables are dynamic according to the system&rsquo;s RAM, and we never re-ran them after migrating to larger Linodes last month
I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again: I&rsquo;m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I&rsquo;m getting those autowire errors in Tomcat 8.5.30 again:
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2
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@ -23,7 +23,7 @@ I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nai
Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items
I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now I created a GitHub issue to track this #389, because I&rsquo;m super busy in Nairobi right now
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2
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@ -33,7 +33,7 @@ Send a note about my dspace-statistics-api to the dspace-tech mailing list
Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage
Today these are the top 10 IPs: Today these are the top 10 IPs:
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2
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@ -33,7 +33,7 @@ Then I ran all system updates and restarted the server
I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another Ghostscript vulnerability last week I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another Ghostscript vulnerability last week
"/> "/>
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2
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@ -47,7 +47,7 @@ I don&rsquo;t see anything interesting in the web server logs around that time t
357 207.46.13.1 357 207.46.13.1
903 54.70.40.11 903 54.70.40.11
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2
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@ -69,7 +69,7 @@ real 0m19.873s
user 0m22.203s user 0m22.203s
sys 0m1.979s sys 0m1.979s
"/> "/>
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4
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@ -43,7 +43,7 @@ Most worryingly, there are encoding errors in the abstracts for eleven items, fo
I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs
"/> "/>
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@ -847,7 +847,7 @@ org.postgresql.util.PSQLException: This statement has been closed.
<ul> <ul>
<li>Could be an error in the docs, as I see the <a href="https://commons.apache.org/proper/commons-dbcp/configuration.html">Apache Commons DBCP</a> has -1 as the default</li> <li>Could be an error in the docs, as I see the <a href="https://commons.apache.org/proper/commons-dbcp/configuration.html">Apache Commons DBCP</a> has -1 as the default</li>
<li>Maybe I need to re-evaluate the &ldquo;defauts&rdquo; of Tomcat 7&rsquo;s DBCP and set them explicitly in our config</li> <li>Maybe I need to re-evaluate the &ldquo;defauts&rdquo; of Tomcat 7&rsquo;s DBCP and set them explicitly in our config</li>
<li>From Tomcat 8 they seem to default to Apache Commons&rsquo; DBCP 2.x</li> <li>From Tomcat 8 they seem to default to Apache Commons' DBCP 2.x</li>
</ul> </ul>
</li> </li>
<li>Also, CGSpace doesn&rsquo;t have many Cocoon errors yet this morning:</li> <li>Also, CGSpace doesn&rsquo;t have many Cocoon errors yet this morning:</li>

2
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@ -61,7 +61,7 @@ $ ./fix-metadata-values.py -i /tmp/2019-02-21-fix-4-regions.csv -db dspace -u ds
$ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-2-countries.csv -db dspace -u dspace -p &#39;fuuu&#39; -m 228 -f cg.coverage.country -d $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-2-countries.csv -db dspace -u dspace -p &#39;fuuu&#39; -m 228 -f cg.coverage.country -d
$ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace -u dspace -p &#39;fuuu&#39; -m 231 -f cg.coverage.region -d $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace -u dspace -p &#39;fuuu&#39; -m 231 -f cg.coverage.region -d
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2
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@ -45,7 +45,7 @@ DELETE 1
But after this I tried to delete the item from the XMLUI and it is still present&hellip; But after this I tried to delete the item from the XMLUI and it is still present&hellip;
"/> "/>
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2
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@ -31,7 +31,7 @@ Run system updates on CGSpace (linode18) and reboot it
Skype with Marie-Angélique and Abenet about CG Core v2 Skype with Marie-Angélique and Abenet about CG Core v2
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4
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@ -35,7 +35,7 @@ CGSpace
Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community
"/> "/>
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@ -516,7 +516,7 @@ issn.validate('1020-3362')
<li>I turned the Pandas script into a proper Python package called <a href="https://git.sr.ht/~alanorth/csv-metadata-quality">csv-metadata-quality</a> <li>I turned the Pandas script into a proper Python package called <a href="https://git.sr.ht/~alanorth/csv-metadata-quality">csv-metadata-quality</a>
<ul> <ul>
<li>It supports CSV and Excel files</li> <li>It supports CSV and Excel files</li>
<li>It fixes whitespace errors and erroneous multi-value separators (&ldquo;|&rdquo;) and validates ISSN, ISBNs, and dates</li> <li>It fixes whitespace errors and erroneous multi-value separators (&quot;|&quot;) and validates ISSN, ISBNs, and dates</li>
<li>Also I added a bunch of other checks/fixes for unnecessary and &ldquo;suspicious&rdquo; Unicode characters</li> <li>Also I added a bunch of other checks/fixes for unnecessary and &ldquo;suspicious&rdquo; Unicode characters</li>
<li>I added fixes to drop duplicate metadata values</li> <li>I added fixes to drop duplicate metadata values</li>
<li>And lastly, I added validation of ISO 639-2 and ISO 639-3 languages</li> <li>And lastly, I added validation of ISO 639-2 and ISO 639-3 languages</li>

2
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@ -43,7 +43,7 @@ After rebooting, all statistics cores were loaded&hellip; wow, that&rsquo;s luck
Run system updates on DSpace Test (linode19) and reboot it Run system updates on DSpace Test (linode19) and reboot it
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2
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@ -69,7 +69,7 @@ Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning:
7249 2a01:7e00::f03c:91ff:fe18:7396 7249 2a01:7e00::f03c:91ff:fe18:7396
9124 45.5.186.2 9124 45.5.186.2
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2
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@ -15,7 +15,7 @@
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="October, 2019"/> <meta name="twitter:title" content="October, 2019"/>
<meta name="twitter:description" content="2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U&#43;00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix: $ csvcut -c &#39;id,dc."/> <meta name="twitter:description" content="2019-10-01 Udana from IWMI asked me for a CSV export of their community on CGSpace I exported it, but a quick run through the csv-metadata-quality tool shows that there are some low-hanging fruits we can fix before I send him the data I will limit the scope to the titles, regions, subregions, and river basins for now to manually fix some non-breaking spaces (U&#43;00A0) there that would otherwise be removed by the csv-metadata-quality script&rsquo;s &ldquo;unneccesary Unicode&rdquo; fix: $ csvcut -c &#39;id,dc."/>
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2
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@ -55,7 +55,7 @@ Let&rsquo;s see how many of the REST API requests were for bitstreams (because t
# zcat --force /var/log/nginx/rest.log.*.gz | grep -E &quot;[0-9]{1,2}/Oct/2019&quot; | grep -c -E &quot;/rest/bitstreams&quot; # zcat --force /var/log/nginx/rest.log.*.gz | grep -E &quot;[0-9]{1,2}/Oct/2019&quot; | grep -c -E &quot;/rest/bitstreams&quot;
106781 106781
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6
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@ -43,7 +43,7 @@ Make sure all packages are up to date and the package manager is up to date, the
# dpkg -C # dpkg -C
# reboot # reboot
"/> "/>
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@ -150,7 +150,7 @@ Make sure all packages are up to date and the package manager is up to date, the
# tar czf 2019-12-01-linode18-etc.tar.gz /etc # tar czf 2019-12-01-linode18-etc.tar.gz /etc
</code></pre><ul> </code></pre><ul>
<li>Then check all third-party repositories in /etc/apt to see if everything using &ldquo;xenial&rdquo; has packages available for &ldquo;bionic&rdquo; and then update the sources:</li> <li>Then check all third-party repositories in /etc/apt to see if everything using &ldquo;xenial&rdquo; has packages available for &ldquo;bionic&rdquo; and then update the sources:</li>
<li><!-- raw HTML omitted --># sed -i &rsquo;s/xenial/bionic/&rsquo; /etc/apt/sources.list.d/*.list<!-- raw HTML omitted --></li> <li><!-- raw HTML omitted --># sed -i &rsquo;s/xenial/bionic/' /etc/apt/sources.list.d/*.list<!-- raw HTML omitted --></li>
<li>Pause the Uptime Robot monitoring for CGSpace</li> <li>Pause the Uptime Robot monitoring for CGSpace</li>
<li>Make sure the update manager is installed and do the upgrade:</li> <li>Make sure the update manager is installed and do the upgrade:</li>
</ul> </ul>
@ -210,7 +210,7 @@ $ http 'https://dspacetest.cgiar.org/oai/request?verb=GetRecord&amp;metadataPref
COPY 48 COPY 48
</code></pre><h2 id="2019-12-05">2019-12-05</h2> </code></pre><h2 id="2019-12-05">2019-12-05</h2>
<ul> <ul>
<li>Give <a href="https://hdl.handle.net/10568/106045">presentation about CG Core v2</a> to the MEL Developers&rsquo; Retreat in Nairobi, Kenya (via Skype)</li> <li>Give <a href="https://hdl.handle.net/10568/106045">presentation about CG Core v2</a> to the MEL Developers' Retreat in Nairobi, Kenya (via Skype)</li>
<li>Send some pull requests to the cg-core schema repository: <li>Send some pull requests to the cg-core schema repository:
<ul> <ul>
<li><a href="https://github.com/AgriculturalSemantics/cg-core/pull/16">HTML syntax fixes</a></li> <li><a href="https://github.com/AgriculturalSemantics/cg-core/pull/16">HTML syntax fixes</a></li>

2
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@ -53,7 +53,7 @@ I tweeted the CGSpace repository link
"/> "/>
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2
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@ -35,7 +35,7 @@ The code finally builds and runs with a fresh install
"/> "/>
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4
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@ -39,7 +39,7 @@ You need to download this into the DSpace 6.x source and compile it
"/> "/>
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@ -444,7 +444,7 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
</ul> </ul>
<h2 id="2020-03-29">2020-03-29</h2> <h2 id="2020-03-29">2020-03-29</h2>
<ul> <ul>
<li>Add two more Bioversity ORCID iDs to CGSpace and then tag ~70 of the authors&rsquo; existing publications in the database using this CSV with my <code>add-orcid-identifiers-csv.py</code> script:</li> <li>Add two more Bioversity ORCID iDs to CGSpace and then tag ~70 of the authors' existing publications in the database using this CSV with my <code>add-orcid-identifiers-csv.py</code> script:</li>
</ul> </ul>
<pre><code>dc.contributor.author,cg.creator.id <pre><code>dc.contributor.author,cg.creator.id
&quot;Snook, L.K.&quot;,&quot;Laura Snook: 0000-0002-9168-1301&quot; &quot;Snook, L.K.&quot;,&quot;Laura Snook: 0000-0002-9168-1301&quot;

4
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@ -45,7 +45,7 @@ The third item now has a donut with score 1 since I tweeted it last week
On the same note, the one item Abenet pointed out last week now has a donut with score of 104 after I tweeted it last week On the same note, the one item Abenet pointed out last week now has a donut with score of 104 after I tweeted it last week
"/> "/>
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@ -353,7 +353,7 @@ Total number of bot hits purged: 8909
&quot;Waters-Bayer, Ann&quot;,&quot;Ann Waters-Bayer: 0000-0003-1887-7903&quot; &quot;Waters-Bayer, Ann&quot;,&quot;Ann Waters-Bayer: 0000-0003-1887-7903&quot;
&quot;Klerkx, Laurens&quot;,&quot;Laurens Klerkx: 0000-0002-1664-886X&quot; &quot;Klerkx, Laurens&quot;,&quot;Laurens Klerkx: 0000-0002-1664-886X&quot;
</code></pre><ul> </code></pre><ul>
<li>I confirmed some of the authors&rsquo; names from the report itself, then by looking at their profiles on ORCID.org</li> <li>I confirmed some of the authors' names from the report itself, then by looking at their profiles on ORCID.org</li>
<li>Add new ILRI subject &ldquo;COVID19&rdquo; to the <code>5_x-prod</code> branch</li> <li>Add new ILRI subject &ldquo;COVID19&rdquo; to the <code>5_x-prod</code> branch</li>
<li>Add new CCAFS Phase II project tags to the <code>5_x-prod</code> branch</li> <li>Add new CCAFS Phase II project tags to the <code>5_x-prod</code> branch</li>
<li>I will deploy these to CGSpace in the next few days</li> <li>I will deploy these to CGSpace in the next few days</li>

2
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@ -31,7 +31,7 @@ I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2
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@ -33,7 +33,7 @@ I sent Atmire the dspace.log from today and told them to log into the server to
In other news, I checked the statistics API on DSpace 6 and it&rsquo;s working In other news, I checked the statistics API on DSpace 6 and it&rsquo;s working
I tried to build the OAI registry on the freshly migrated DSpace 6 on DSpace Test and I get an error: I tried to build the OAI registry on the freshly migrated DSpace 6 on DSpace Test and I get an error:
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@ -35,7 +35,7 @@ I restarted Tomcat and PostgreSQL and the issue was gone
Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the 5_x-prod branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter&rsquo;s request Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the 5_x-prod branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter&rsquo;s request
"/> "/>
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@ -431,7 +431,7 @@ $ ./fix-metadata-values.py -i 2020-07-07-fix-sponsors.csv -db dspace -u dspace -
</ul> </ul>
<pre><code>$ csvgrep -c 'number of matches' -r &quot;^0$&quot; 2020-07-05-cgspace-subjects.csv | csvcut -c 1 &gt; 2020-07-05-cgspace-invalid-subjects.csv <pre><code>$ csvgrep -c 'number of matches' -r &quot;^0$&quot; 2020-07-05-cgspace-subjects.csv | csvcut -c 1 &gt; 2020-07-05-cgspace-invalid-subjects.csv
</code></pre><ul> </code></pre><ul>
<li>Yesterday Gabriela from CIP emailed to say that she was removing the accents from her authors&rsquo; names because of &ldquo;funny character&rdquo; issues with reports generated from CGSpace <li>Yesterday Gabriela from CIP emailed to say that she was removing the accents from her authors' names because of &ldquo;funny character&rdquo; issues with reports generated from CGSpace
<ul> <ul>
<li>I told her that it&rsquo;s probably her Windows / Excel that is messing up the data, and she figured out how to open them correctly!</li> <li>I told her that it&rsquo;s probably her Windows / Excel that is messing up the data, and she figured out how to open them correctly!</li>
<li>Now she says she doesn&rsquo;t want to remove the accents after all and she sent me a new list of corrections</li> <li>Now she says she doesn&rsquo;t want to remove the accents after all and she sent me a new list of corrections</li>

2
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@ -33,7 +33,7 @@ It is class based so I can easily add support for other vocabularies, and the te
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@ -25,7 +25,7 @@ I filed an issue on OpenRXV to make some minor edits to the admin UI: https://gi
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@ -45,7 +45,7 @@ I filed a bug on OpenRXV: https://github.com/ilri/OpenRXV/issues/39
I filed an issue on OpenRXV to make some minor edits to the admin UI: https://github.com/ilri/OpenRXV/issues/40 I filed an issue on OpenRXV to make some minor edits to the admin UI: https://github.com/ilri/OpenRXV/issues/40
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@ -55,9 +55,9 @@ I filed an issue on OpenRXV to make some minor edits to the admin UI: https://gi
"@type": "BlogPosting", "@type": "BlogPosting",
"headline": "September, 2020", "headline": "September, 2020",
"url": "https://alanorth.github.io/cgspace-notes/2020-09/", "url": "https://alanorth.github.io/cgspace-notes/2020-09/",
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"name": "Alan Orth" "name": "Alan Orth"
@ -426,6 +426,44 @@ Would fix 3 occurences of: SOUTHWEST ASIA
</code></pre><ul> </code></pre><ul>
<li>Then I uploaded them to CGSpace</li> <li>Then I uploaded them to CGSpace</li>
</ul> </ul>
<h2 id="2020-09-16">2020-09-16</h2>
<ul>
<li>Looking further into Carlos Tejos&rsquo;s question about integrating LandVoc (the AGROVOC subset) into DSpace
<ul>
<li>I see that you can actually get LandVoc concepts directly from AGROVOC&rsquo;s SPARQL, for example with <a href="http://agrovoc.uniroma2.it/sparql#query=PREFIX+rdfs%3A+%3Chttp%3A%2F%2Fwww.w3.org%2F2000%2F01%2Frdf-schema%23%3E%0APREFIX+skos%3A+%3Chttp%3A%2F%2Fwww.w3.org%2F2004%2F02%2Fskos%2Fcore%23%3E%0A%0ASELECT+%3Fconcept%0AWHERE+%7B%0A++%3Fconcept+a+skos%3AConcept+%3B%0A+++++++++++skos%3AinScheme+%3Chttp%3A%2F%2Flandvoc.org%2Flandvoc%3E+.%0A%0A%7D+ORDER+BY+%3Fconcept&amp;contentTypeConstruct=text%2Fturtle&amp;contentTypeSelect=application%2Fsparql-results%2Bjson&amp;endpoint=http%3A%2F%2Fagrovoc.uniroma2.it%2Fsparql&amp;requestMethod=POST&amp;tabTitle=Query&amp;headers=%7B%7D&amp;outputFormat=table">this query</a></li>
</ul>
</li>
</ul>
<p><img src="/cgspace-notes/2020/09/agrovoc-landvoc-sparql.png" alt="AGROVOC LandVoc SPARQL"></p>
<ul>
<li>So maybe we can query AGROVOC directly using a similar method to <a href="https://github.com/4Science/DSpace/blob/dspace-5_x_x-cris/dspace-api/src/main/java/org/dspace/content/authority/TGNAuthority.java">DSpace-CRIS&rsquo;s GettyAuthority</a></li>
<li>I wired up DSpace-CRIS&rsquo;s VIAFAuthority to see how authorities for auto suggested names get stored
<ul>
<li>After submission you can see the item&rsquo;s VIAF identifier:</li>
</ul>
</li>
</ul>
<p><img src="/cgspace-notes/2020/09/viaf-authority.png" alt="VIAF authority"></p>
<ul>
<li>And this identifier is the ID on VIAF, pretty cool!</li>
</ul>
<p><img src="/cgspace-notes/2020/09/viaf-darwin.png" alt="VIAF entry for Charles Darwin"></p>
<ul>
<li>I did a similar test with the Getty Thesaurus of Geographic Names (TGN) and it stores the concept URI in the authority:</li>
</ul>
<p><img src="/cgspace-notes/2020/09/tgn-concept-uri.png" alt="TGNAuthority"></p>
<ul>
<li>But the authority values are not exposed anywhere as metadata&hellip;
<ul>
<li>I need to play with it a bit more I guess&hellip;</li>
</ul>
</li>
<li>The nice thing is that the Getty example from DSpace-CRIS uses SPARQL as well, and the TGN authority extends it
<ul>
<li>We could use a similar model for AGROVOC/LandVoc very easily</li>
</ul>
</li>
</ul>
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@ -839,4 +835,4 @@ COPY 54701
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@ -15,7 +15,7 @@
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@ -15,7 +15,7 @@
<meta name="twitter:card" content="summary"/> <meta name="twitter:card" content="summary"/>
<meta name="twitter:title" content="CGSpace CG Core v2 Migration"/> <meta name="twitter:title" content="CGSpace CG Core v2 Migration"/>
<meta name="twitter:description" content="Possible changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2."/> <meta name="twitter:description" content="Possible changes to CGSpace metadata fields to align more with DC, QDC, and DCTERMS as well as CG Core v2."/>
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@ -199,225 +199,225 @@
<thead> <thead>
<tr> <tr>
<th>Field Name</th> <th>Field Name</th>
<th align="center">migrate-fields.sh</th> <th style="text-align:center">migrate-fields.sh</th>
<th align="center">Input Forms</th> <th style="text-align:center">Input Forms</th>
<th align="center">XMLUI Themes¹</th> <th style="text-align:center">XMLUI Themes¹</th>
<th align="center">dspace.cfg</th> <th style="text-align:center">dspace.cfg</th>
<th align="center">Discovery</th> <th style="text-align:center">Discovery</th>
<th align="center">Atmire Modules</th> <th style="text-align:center">Atmire Modules</th>
<th align="center">Crosswalks</th> <th style="text-align:center">Crosswalks</th>
</tr> </tr>
</thead> </thead>
<tbody> <tbody>
<tr> <tr>
<td>cg.creator.identifier</td> <td>cg.creator.identifier</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>dcterms.extent</td> <td>dcterms.extent</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>dcterms.issued</td> <td>dcterms.issued</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">?</td> <td style="text-align:center">?</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>dcterms.abstract</td> <td>dcterms.abstract</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>dcterms.description</td> <td>dcterms.description</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>cg.contributor.donor</td> <td>cg.contributor.donor</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>cg.review-status</td> <td>cg.review-status</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>cg.howpublished</td> <td>cg.howpublished</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
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<td>dcterms.bibliographicCitation</td> <td>dcterms.bibliographicCitation</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
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<td>dcterms.accessRights</td> <td>dcterms.accessRights</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
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<tr> <tr>
<td>dcterms.language</td> <td>dcterms.language</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>dcterms.relation</td> <td>dcterms.relation</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center"></td> <td style="text-align:center"></td>
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<td align="center">✓</td> <td style="text-align:center">✓</td>
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<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
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<td>dcterms.isPartOf</td> <td>dcterms.isPartOf</td>
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<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
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<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
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<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>dcterms.subject</td> <td>dcterms.subject</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>dcterms.type</td> <td>dcterms.type</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>cg.isbn</td> <td>cg.isbn</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
<tr> <tr>
<td>cg.issn</td> <td>cg.issn</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center"></td> <td style="text-align:center"></td>
</tr> </tr>
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<td>dcterms.audience</td> <td>dcterms.audience</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">-</td> <td style="text-align:center">-</td>
<td align="center">✓</td> <td style="text-align:center">✓</td>
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