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Add notes for 2022-03-31

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Alan Orth 2022-03-31 16:09:14 +03:00
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Signed by: alanorth
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26 changed files with 90 additions and 31 deletions
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27
content/posts/2022-03.md
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@ -271,4 +271,31 @@ $ chrt -b 0 dspace filter-media -p "ImageMagick PDF Thumbnail" -i 10947/50
- After that I did some normalization on the `cg.subject.system` metadata and extracted a few dozen countries to the country field - After that I did some normalization on the `cg.subject.system` metadata and extracted a few dozen countries to the country field
- Start a harvest on AReS - Start a harvest on AReS
## 2022-03-30
- Yesterday Rafael from CIAT asked me to re-create his approver account on DSpace Test as well
```console
$ dspace user -a -m tip-approve@cgiar.org -g Rafael -s Rodriguez -p 'fuuuu'
```
- I started looking into the request regarding the CIAT Library PDFs
- There are over 4,000 links to PDFs hosted on that server in CGSpace metadata
- The links seem to be down though! I emailed Paola to ask
## 2022-03-31
- Switch DSpace Test (linode26) back to CMS GC so I can do some monitoring and evaluation of GC before switching to G1GC
- Leroy from CIAT said that the CIAT Library server has security issues so was limited to internal traffic
- I extracted a list of URLs from CGSpace to send him:
```console
localhost/dspacetest= ☘ \COPY (SELECT DISTINCT(text_value) FROM metadatavalue WHERE metadata_field_id=219 AND text_value ~ 'https?://ciat-library') to /tmp/2022-03-31-ciat-library-urls.csv WITH CSV HEADER;
COPY 4552
```
- I did some checks and cleanups in OpenRefine because there are some values with "#page" etc
- Once I sorted them there were only ~2,700, which means there are going to be almost two thousand items with duplicate PDFs
- I suggested that we might want to handle those cases specially and extract the chapters or whatever page range since they are probably books
<!-- vim: set sw=2 ts=2: --> <!-- vim: set sw=2 ts=2: -->

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@ -19,7 +19,7 @@ $ csvjoin -c id /tmp/2022-03-01-tac-batch4-701-980.csv /tmp/tac4-filenames.csv &
<meta property="og:type" content="article" /> <meta property="og:type" content="article" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-03/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2022-03/" />
<meta property="article:published_time" content="2022-03-01T16:46:54+03:00" /> <meta property="article:published_time" content="2022-03-01T16:46:54+03:00" />
<meta property="article:modified_time" content="2022-03-29T16:01:48+03:00" /> <meta property="article:modified_time" content="2022-03-29T21:26:07+03:00" />
@ -44,9 +44,9 @@ $ csvjoin -c id /tmp/2022-03-01-tac-batch4-701-980.csv /tmp/tac4-filenames.csv &
"@type": "BlogPosting", "@type": "BlogPosting",
"headline": "March, 2022", "headline": "March, 2022",
"url": "https://alanorth.github.io/cgspace-notes/2022-03/", "url": "https://alanorth.github.io/cgspace-notes/2022-03/",
"wordCount": "1589", "wordCount": "1789",
"datePublished": "2022-03-01T16:46:54+03:00", "datePublished": "2022-03-01T16:46:54+03:00",
"dateModified": "2022-03-29T16:01:48+03:00", "dateModified": "2022-03-29T21:26:07+03:00",
"author": { "author": {
"@type": "Person", "@type": "Person",
"name": "Alan Orth" "name": "Alan Orth"
@ -406,6 +406,38 @@ isNotNull(value.match(&#39;889&#39;))
<li>After that I did some normalization on the <code>cg.subject.system</code> metadata and extracted a few dozen countries to the country field</li> <li>After that I did some normalization on the <code>cg.subject.system</code> metadata and extracted a few dozen countries to the country field</li>
<li>Start a harvest on AReS</li> <li>Start a harvest on AReS</li>
</ul> </ul>
<h2 id="2022-03-30">2022-03-30</h2>
<ul>
<li>Yesterday Rafael from CIAT asked me to re-create his approver account on DSpace Test as well</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ dspace user -a -m tip-approve@cgiar.org -g Rafael -s Rodriguez -p <span style="color:#e6db74">&#39;fuuuu&#39;</span>
</span></span></code></pre></div><ul>
<li>I started looking into the request regarding the CIAT Library PDFs
<ul>
<li>There are over 4,000 links to PDFs hosted on that server in CGSpace metadata</li>
<li>The links seem to be down though! I emailed Paola to ask</li>
</ul>
</li>
</ul>
<h2 id="2022-03-31">2022-03-31</h2>
<ul>
<li>Switch DSpace Test (linode26) back to CMS GC so I can do some monitoring and evaluation of GC before switching to G1GC</li>
<li>Leroy from CIAT said that the CIAT Library server has security issues so was limited to internal traffic
<ul>
<li>I extracted a list of URLs from CGSpace to send him:</li>
</ul>
</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>localhost/dspacetest= ☘ \COPY (SELECT DISTINCT(text_value) FROM metadatavalue WHERE metadata_field_id=219 AND text_value ~ &#39;https?://ciat-library&#39;) to /tmp/2022-03-31-ciat-library-urls.csv WITH CSV HEADER;
</span></span><span style="display:flex;"><span>COPY 4552
</span></span></code></pre></div><ul>
<li>I did some checks and cleanups in OpenRefine because there are some values with &ldquo;#page&rdquo; etc
<ul>
<li>Once I sorted them there were only ~2,700, which means there are going to be almost two thousand items with duplicate PDFs</li>
<li>I suggested that we might want to handle those cases specially and extract the chapters or whatever page range since they are probably books</li>
</ul>
</li>
</ul>
<!-- raw HTML omitted --> <!-- raw HTML omitted -->

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/categories/notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." /> <meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/" />
<meta property="og:updated_time" content="2022-03-29T16:01:48+03:00" /> <meta property="og:updated_time" content="2022-03-29T21:26:07+03:00" />

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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" /> <meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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<meta property="og:type" content="website" /> <meta property="og:type" content="website" />
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</url><url> </url><url>
<loc>https://alanorth.github.io/cgspace-notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/</loc>
<lastmod>2022-03-29T16:01:48+03:00</lastmod> <lastmod>2022-03-29T21:26:07+03:00</lastmod>
</url><url> </url><url>
<loc>https://alanorth.github.io/cgspace-notes/2022-03/</loc> <loc>https://alanorth.github.io/cgspace-notes/2022-03/</loc>
<lastmod>2022-03-29T16:01:48+03:00</lastmod> <lastmod>2022-03-29T21:26:07+03:00</lastmod>
</url><url> </url><url>
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc> <loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
<lastmod>2022-03-29T16:01:48+03:00</lastmod> <lastmod>2022-03-29T21:26:07+03:00</lastmod>
</url><url> </url><url>
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc> <loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
<lastmod>2022-03-29T16:01:48+03:00</lastmod> <lastmod>2022-03-29T21:26:07+03:00</lastmod>
</url><url> </url><url>
<loc>https://alanorth.github.io/cgspace-notes/2022-02/</loc> <loc>https://alanorth.github.io/cgspace-notes/2022-02/</loc>
<lastmod>2022-03-01T17:17:27+03:00</lastmod> <lastmod>2022-03-01T17:17:27+03:00</lastmod>